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An interview with Jeremy Carlton 对杰里米·卡尔顿的采访
IF 3.9 4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-03-07 DOI: 10.1016/j.cdev.2023.203829
John J. Williamson
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引用次数: 0
Divergent tooth development mechanisms of Mexican tetra fish (Astyanax mexicanus) of Pachón cave origin Pachón穴居起源的墨西哥四目鱼(Astyanax mexicanus)牙齿分化发育机制
IF 3.9 4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-03-01 DOI: 10.1016/j.cdev.2022.203823
Devi Atukorallaya, Vikram Bhatia, Jessica Gonzales

The Mexican tetra (Astyanax mexicanus) is one of the fresh water teleost fish models in evolutionary developmental biology. The existence of two morphs: eyed, pigmented surface fish and blind depigmented cavefish from multiple cave populations, provides a unique system to study adaptive radiation. Compared to the adult surface fish, cavefish have large oral jaws with an increased number of structurally-complex teeth. Early tooth development has not been studied in detail in cavefish populations. In this study, bone-stained growth series and vital dye staining was used to trace the development and replacement of dentitions in Pachón cavefish. Our results show that first tooth eruption was delayed in cavefish compared to the surface fish. In particular, the first tooth eruption cycle persisted until 35 days post fertilization (dpf). Unlike surface fish, there are multicuspid teeth in cavefish first generation dentition. In addition to the teeth in the marginal oral jaw bones, Pachón cavefish have teeth in the ectopterygoid bone of the palatine roof. Next, we characterised the expression of ectodysplasin signalling pathway genes in tooth-forming regions of surface and cavefish. Interestingly, higher expression of Eda and Edar was found in cavefish compared to the surface fish. The altered ectodysplasin expression needs further investigation to confirm the different molecular mechanisms for tooth development in the oral and pharyngeal regions of surface fish and cavefish.

墨西哥四鱼(Astyanax mexicanus)是进化发育生物学中的淡水硬骨鱼模型之一。两种形态的存在:来自多个洞穴种群的有眼、有色素的表层鱼和失明、有色素脱落的洞穴鱼,为研究适应性辐射提供了一个独特的系统。与成年表层鱼相比,洞穴鱼的口腔较大,牙齿结构复杂。洞穴鱼类种群的早期牙齿发育尚未得到详细研究。在本研究中,使用骨染色生长系列和活性染料染色来追踪Pachón洞穴鱼牙齿的发育和替换。我们的研究结果表明,与表层鱼类相比,洞穴鱼类的第一次牙齿萌出延迟了。特别是,第一个萌牙周期持续到受精后35天(dpf)。与表层鱼类不同,洞穴鱼的第一代齿列中有多棘牙齿。除了口腔边缘颌骨的牙齿外,Pachón洞穴鱼的腭顶外翼骨也有牙齿。接下来,我们对体外发育异常信号通路基因在表面和洞穴鱼牙齿形成区域的表达进行了表征。有趣的是,与表层鱼类相比,洞穴鱼类中Eda和Edar的表达更高。外胚层发育异常蛋白表达的改变需要进一步研究,以证实表层鱼和洞穴鱼口腔和咽部牙齿发育的不同分子机制。
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引用次数: 0
GPD2: The relationship with cancer and neural stemness GPD2:与肿瘤和神经干性的关系
IF 3.9 4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-03-01 DOI: 10.1016/j.cdev.2022.203824
Maimaiti Mikeli , Makoto Fujikawa , Tsutomu Tanabe

We previously reported that knocking down GPD2 (glycerol-3-phosphate dehydrogenase 2), responsible for the glycerol-phosphate shuttle, causes human hepatocarcinoma-derived HuH-7 cells, lowering the cancer stemness. After examining whether GPD2 expression in the other cell lines could affect their cancer stemness, this study showed that human neuroblastoma-derived SH-SY5Y cells also lower the ability of sphere formation by knocking down GPD2. This suggests that GPD2 relates to the common mechanism for maintaining cancer stem cells, as in the cases like SH-SY5Y and HuH-7 cells. In addition, knocking down GPD2 in SH-SY5Y cells showed a morphological change and increasing tendency of neuronal marker genes, including GAP43, NeuN, and TUBB3, indicating that GPD2 may contribute to not only cancer but also neural stem cell maintenance. After all, GPD2 may play a role in maintaining cancer and neural stemness, although further rigorous studies are essential to conclude this. It is expected that GPD2 will be a novel target gene for cancer therapy, stem cell research, and development.

我们之前报道,敲低GPD2(甘油-3-磷酸脱氢酶2),负责甘油-磷酸穿梭,导致人类肝癌衍生的HuH-7细胞,降低癌症的干性。在检测了GPD2在其他细胞系中的表达是否会影响其癌症干性后,本研究表明,人类神经母细胞瘤衍生的SH-SY5Y细胞也通过敲低GPD2来降低球体形成的能力。这表明GPD2与维持癌症干细胞的常见机制有关,如SH-SY5Y和HuH-7细胞。此外,在SH-SY5Y细胞中敲除GPD2显示了包括GAP43、NeuN和TUBB3在内的神经元标记基因的形态学变化和增加趋势,表明GPD2不仅有助于癌症,而且有助于神经干细胞的维持。毕竟,GPD2可能在维持癌症和神经干度方面发挥作用,尽管需要进一步的严格研究才能得出结论。GPD2有望成为癌症治疗、干细胞研究和开发的新靶基因。
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引用次数: 0
5-Azacytidine incorporated skeletal muscle-derived hydrogel promotes rat skeletal muscle regeneration 5-氮胞苷结合骨骼肌衍生水凝胶促进大鼠骨骼肌再生
IF 3.9 4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-03-01 DOI: 10.1016/j.cdev.2023.203826
Behnaz Mirza Ahmadi , Afshin Noori , Mohammad Kazemi Ashtiani , Sarah Rajabi , Mahmood Talkhabi

Decellularized skeletal muscle is a promising biomaterial for muscle regeneration due to the mimicking of the natural microenvironment. Previously, it has been reported that 5-Azacytidine (5-Aza), a DNA methyltransferase inhibitor, induces myogenesis in different types of stem cells. In the current study, we investigated the effect of 5-Aza incorporated muscle-derived hydrogel on the viability and proliferation of muscle-derived stem cells (MDSCs) in vitro and muscle regeneration in vivo. Wistar rat skeletal muscles were decellularized using a physico-chemical protocol. The decellularized tissue was analyzed using SEM, histological staining and evaluation of DNA content. Then, muscle-derived hydrogel was made from Pepsin-digested decellularized muscle tissues. 5-Aza was physically adsorbed in prepared hydrogels. Then, MDSCs were cultured on hydrogels with/without 5-Aza, and their proliferation and cell viability were determined using LIVE/DEAD and DAPI staining. Moreover, myectomy lesions were done in rat femoris muscles, muscle-derived hydroges with/without 5-Aza were injected to the myectomy sites, and histological evaluation was performed after three weeks. The analysis of decellularized muscle tissues showed that they maintained extracellular matrix components of native muscles, while they lacked DNA. LIVE/DEAD and DAPI staining showed that the hydrogel containing 5-Aza supported MDSCs viability. Histological analysis of myectomy sites showed an improvement in muscle regeneration after administration of 5-Aza incorporated hydrogel. These findings suggest that the combination of 5-Aza with skeletal muscle hydrogel may serve as an alternative treatment option to improve the regeneration of injured muscle tissue.

脱细胞骨骼肌是一种很有前途的肌肉再生生物材料,因为它模仿了自然微环境。此前,有报道称,5-氮杂胞苷(5-Aza)是一种DNA甲基转移酶抑制剂,可诱导不同类型干细胞的肌生成。在目前的研究中,我们研究了5-Aza掺入的肌源性水凝胶对体外肌源性干细胞(MDSCs)的生存能力和增殖以及体内肌肉再生的影响。使用物理化学方案对Wistar大鼠骨骼肌进行脱细胞。使用SEM、组织学染色和DNA含量评估对脱细胞组织进行分析。然后,用胃蛋白酶消化的脱细胞肌肉组织制备肌肉来源的水凝胶。5-Aza被物理吸附在制备的水凝胶中。然后,在含有/不含有5-Aza的水凝胶上培养MDSCs,并使用LIVE/DEAD和DAPI染色测定其增殖和细胞活力。此外,在大鼠股骨肌肉中进行髓鞘切除损伤,将含有/不含有5-Aza的肌肉衍生水凝胶注射到髓鞘切除部位,并在三周后进行组织学评估。对脱细胞肌肉组织的分析表明,它们维持着天然肌肉的细胞外基质成分,而缺乏DNA。LIVE/DEAD和DAPI染色显示含有5-Aza的水凝胶支持MDSCs的活力。脊髓切除部位的组织学分析显示,施用5-Aza掺入的水凝胶后,肌肉再生有所改善。这些发现表明,5-Aza与骨骼肌水凝胶的组合可能是改善受伤肌肉组织再生的替代治疗选择。
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引用次数: 0
Pvr regulates cyst stem cell division in the Drosophila testis niche, and has functions distinct from Egfr Pvr在果蝇睾丸壁龛中调控囊肿干细胞分裂,具有不同于Egfr的功能
IF 3.9 4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-03-01 DOI: 10.1016/j.cdev.2022.203822
Nastaran Mues, Kenneth Hammer, Judith Leatherman

Regulation of the rate of stem cell division is one of the key determinants of the abundance of differentiating progeny in stem cell-supported tissues, and mis-regulation can lead to tumorigenesis. The well-studied Drosophila testis niche is an excellent model system to study the regulation of stem cell division in vivo. This niche supports two stem cell populations—the germline stem cells (GSCs) and cyst stem cells (CySCs), which cluster around a group of cells called the hub. The differentiating cells of these two stem cell populations cooperate together to produce sperm. Signal transduction initiated by the epidermal growth factor receptor (Egfr) is a key regulatory pathway in the cyst lineage, and much of the study of this stem cell population has centered around understanding the complexities of the requirements for Egfr signaling. We examined another receptor tyrosine kinase, Pvr, the sole Drosophila PDGF/VEGF homolog, and found that it accumulates in the cyst lineage cells of the testis, while its ligand Pvf1 accumulates in the hub. Pvr inhibition caused a reduction in both CySC numbers and the proportion of CySCs in S phase, similar to Egfr inhibition. However, testes with Pvr inhibition exhibited a low-penetrance non-autonomous germ cell differentiation defect distinct from that observed with Egfr inhibition. Cyst cells with constitutively activated Pvr failed to support germ cell differentiation, as observed with constitutively activated Egfr. However, constitutively activated Pvr promoted tumorous accumulation of cyst cells outside of the niche, a phenotype not observed with constitutively activated Egfr. Thus, Egfr and Pvr have some receptor-specific functions and some shared functions in the cyst lineage cells of the testis.

干细胞分裂速率的调节是干细胞支持的组织中分化后代丰度的关键决定因素之一,而错误的调节可能导致肿瘤发生。研究良好的果蝇睾丸生态位是研究体内干细胞分裂调控的优秀模型系统。这种生态位支持两种干细胞群体——种系干细胞(GSCs)和囊肿干细胞(CySC),它们聚集在一组称为中枢的细胞周围。这两个干细胞群体的分化细胞共同作用产生精子。表皮生长因子受体(Egfr)启动的信号转导是囊肿谱系中的一个关键调控途径,对该干细胞群体的大部分研究都集中在了解Egfr信号传导需求的复杂性上。我们检测了另一种受体酪氨酸激酶Pvr,它是果蝇PDGF/VEGF的唯一同源物,发现它在睾丸的囊肿谱系细胞中积累,而它的配体Pvf1在中枢中积累。Pvr抑制导致CySC数量和S期CySC比例的减少,类似于Egfr抑制。然而,Pvr抑制的睾丸表现出与Egfr抑制不同的低外显率非自主生殖细胞分化缺陷。具有组成型活化Pvr的囊性细胞不能支持生殖细胞分化,如用组成型活化Egfr观察到的。然而,组成型激活的Pvr促进了小生境外囊肿细胞的肿瘤积聚,这是组成型激活Egfr未观察到的表型。因此,Egfr和Pvr在睾丸囊肿谱系细胞中具有一些受体特异性功能和一些共享功能。
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引用次数: 1
Celebrating Spemann-Mangold at 100: An interview with Eddy De Robertis 庆祝斯潘曼-曼戈尔德100岁:艾迪·德·罗伯蒂斯的采访
IF 3.9 4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-03-01 DOI: 10.1016/j.cdev.2023.203828
John Williamson
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引用次数: 0
Physical models of notochord cell packing reveal how tension ratios determine morphometry 脊索细胞堆积的物理模型揭示了张力比如何决定形态
IF 3.9 4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-03-01 DOI: 10.1016/j.cdev.2023.203825
Evan J. Curcio, Sharon R. Lubkin

The physical and geometric aspects of notochords are investigated using a model of finite-length notochords, with interior vacuolated cells arranged in two common packing configurations, and sheath modeled as homogeneous and thin. The key ratios governing packing patterns and eccentricity are number of cells per unit length λ and cell tension ratio Γ. By analyzing simulations that vary Γ and total number of cells N, we find that eccentricity, λ, and internal pressure approach consistent asymptotic values away from the tapering ends, as N increases. The length of the tapering ends is quantified as a function of Γ and pattern. Formulas are derived for geometric ratios, pressure, and energy as functions of Γ and pattern. These observations on the relationship between mechanics, geometry, and pattern provide a framework for further work which may provide insight into the roles of mechanosensing and pressure-volume regulation in the notochord.

使用有限长度脊索模型研究了脊索的物理和几何方面,其中内部空泡细胞以两种常见的填充配置排列,鞘层建模为均质和薄的。控制填充模式和偏心率的关键比率是每单位长度的单元数λ和单元张力比Γ。通过分析改变Γ和单元总数N的模拟,我们发现随着N的增加,离心率、λ和内压在远离锥形端的地方接近一致的渐近值。锥形末端的长度被量化为Γ和图案的函数。导出了几何比、压力和能量作为Γ和模式函数的公式。这些对力学、几何和模式之间关系的观察为进一步的工作提供了一个框架,可以深入了解机械感应和压力-体积调节在脊索中的作用。
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引用次数: 1
Inhibition of TGFβ1/Smad pathway by NF-κB induces inflammation leading to poor wound healing in high glucose NF-κB抑制tgf - β1/Smad通路可诱导炎症,导致高糖患者伤口愈合不良
IF 3.9 4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-12-01 DOI: 10.1016/j.cdev.2022.203814
Fan Gong , Yun Zhang , Suoli Cheng , Xuebing Zhou , Hanling Zhang , Jian Gao , Xiaoliang Li , Guoxu Ma , Jianke Wu , Bowen Zhang , Kun Xia , Fei Zhao

This study mainly analyzed the relationship between nuclear factor kappa-light-chain-enhancer of activated B cells (NF-κB) and transforming growth factor-β (TGFβ1)/Smad under high glucose environment and its influence on wound healing. Fibroblast NIH-3T3 was used to analyze the effect of high concentration glucose (20 nmol/mL) on cell viability, migration ability, inflammation level and NF-κB pathway. Pyrrolidinedithiocarbamate (PDTC) was used to inhibit NF-κB for rescue experiments. Diabetic mice were used to construct wound healing models. Recombinant TGF-β1 was used to promote wound healing in diabetic mice. FSL-1 was applied to activate NF-κB to verify the mechanism. High glucose inhibited cell viability and migration ability, promoted the expression of TNF-α, IL-6 and IL-1β, induced the activation of NF-κB pathway in fibroblasts. Inhibition of NF-κB not only blocked the decrease in cell viability and migration ability induced by high glucose, but also relieved the release of inflammatory factors. TGF-β1 activated the TGF-β1/Smad pathway and promoted wound healing in diabetic mice. Activating the NF-κB pathway not only inhibited the activation of the TGF-β1/Smad pathway, but also alleviated the promoting effect of TGF-β1 on wound healing. In a high glucose environment, the activation of NF-κB may inhibit the function of fibroblasts by inhibiting the TGF-β1/Smad pathway, resulting in poor wound healing.

本研究主要分析高糖环境下活化B细胞核因子κB轻链增强子(NF-κB)与转化生长因子-β (tgf -β 1)/Smad的关系及其对创面愈合的影响。采用成纤维细胞NIH-3T3分析高浓度葡萄糖(20 nmol/mL)对细胞活力、迁移能力、炎症水平及NF-κB通路的影响。用吡咯烷二硫代氨基甲酸酯(PDTC)抑制NF-κB进行救援实验。采用糖尿病小鼠建立创面愈合模型。利用重组TGF-β1促进糖尿病小鼠创面愈合。应用FSL-1激活NF-κB验证其作用机制。高糖抑制成纤维细胞活力和迁移能力,促进TNF-α、IL-6和IL-1β的表达,诱导NF-κB通路激活。抑制NF-κB不仅可以阻断高糖诱导的细胞活力和迁移能力下降,还可以缓解炎症因子的释放。TGF-β1激活TGF-β1/Smad通路,促进糖尿病小鼠创面愈合。激活NF-κB通路不仅可以抑制TGF-β1/Smad通路的激活,还可以减轻TGF-β1对创面愈合的促进作用。在高糖环境下,NF-κB的激活可能通过抑制TGF-β1/Smad通路抑制成纤维细胞的功能,导致创面愈合不良。
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引用次数: 0
Usability of deep learning pipelines for 3D nuclei identification with Stardist and Cellpose 使用Stardist和Cellpose进行三维核识别的深度学习管道的可用性
IF 3.9 4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-12-01 DOI: 10.1016/j.cdev.2022.203806
Giona Kleinberg , Sophia Wang , Ester Comellas , James R. Monaghan , Sandra J. Shefelbine

Segmentation of 3D images to identify cells and their molecular outputs can be difficult and tedious. Machine learning algorithms provide a promising alternative to manual analysis as emerging 3D image processing technology can save considerable time. For those unfamiliar with machine learning or 3D image analysis, the rapid advancement of the field can make navigating the newest software options confusing. In this paper, two open-source machine learning algorithms, Cellpose and Stardist, are compared in their application on a 3D light sheet dataset counting fluorescently stained proliferative cell nuclei. The effects of image tiling and background subtraction are shown through image analysis pipelines for both algorithms. Based on our analysis, the relative ease of use of Cellpose and the absence of need to train a model leaves it a strong option for 3D cell segmentation despite relatively longer processing times. When Cellpose's pretrained model yields results that are not of sufficient quality, or the analysis of a large dataset is required, Stardist may be more appropriate. Despite the time it takes to train the model, Stardist can create a model specialized to the users' dataset that can be iteratively improved until predictions are satisfactory with far lower processing time relative to other methods.

分割3D图像以识别细胞及其分子输出可能是困难和繁琐的。机器学习算法为人工分析提供了一个有前途的替代方案,因为新兴的3D图像处理技术可以节省大量的时间。对于那些不熟悉机器学习或3D图像分析的人来说,该领域的快速发展可能会使最新软件选项的导航变得混乱。在本文中,比较了两种开源机器学习算法Cellpose和Stardist在3D光片数据集上的应用,该数据集用于计数荧光染色的增殖细胞核。通过两种算法的图像分析管道,展示了图像平铺和背景减法的效果。根据我们的分析,尽管处理时间相对较长,但Cellpose的相对易用性和不需要训练模型使其成为3D细胞分割的强大选择。当Cellpose的预训练模型产生的结果质量不够好,或者需要对大型数据集进行分析时,Stardist可能更合适。尽管训练模型需要时间,但Stardist可以创建一个专门针对用户数据集的模型,该模型可以迭代改进,直到预测令人满意,并且相对于其他方法的处理时间要短得多。
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引用次数: 4
IF 3.9 4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-12-01 DOI: 10.1016/j.cdev.2022.203805
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引用次数: 0
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