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The Northern Ireland Biobank: A Cancer Focused Repository of Science 北爱尔兰生物银行:一个以癌症为重点的科学资料库
Q2 Medicine Pub Date : 2018-09-11 DOI: 10.5334/OJB.47
C. Lewis, S. McQuaid, Priscilla Clark, P. Murray, T. McGuigan, Christine Greene, Bronagh Coulter, K. Mills, J. James
The Northern Ireland Biobank (NIB) was established in 2011 as a joint initiative between Queen’s University Belfast and Belfast Health and Social Care Trust to provide the infrastructure for the standardised collection and storage of high quality, well annotated human tissue samples, with matched bloods and bodily fluids to underpin cancer research in Northern Ireland and beyond. The NIB has been instrumental in supporting translational research locally, nationally and internationally with a number of key achievements to date. The vision of NIB is to develop an internationally recognised biobank network within Northern Ireland which collects, stores and distributes high quality, clinically annotated biospecimens for biomarker research to benefit cancer patients. Funding statement: NIB receives core funding from the Health and Social Care Research and Development Division of the Public Health Agency in Northern Ireland with charitable funding from Friends of the Cancer Centre. NIB previously received charitable funding from Cancer Research UK and Prostate Cancer UK.
北爱尔兰生物库(NIB)成立于2011年,是贝尔法斯特女王大学和贝尔法斯特健康和社会关怀信托基金的一项联合倡议,旨在为标准化收集和储存高质量、有充分注释的人体组织样本提供基础设施,并匹配血液和体液,以支持北爱尔兰及其他地区的癌症研究。NIB在支持本地、国家和国际转化研究方面发挥了重要作用,迄今为止取得了一些重要成就。NIB的愿景是在北爱尔兰建立一个国际公认的生物银行网络,收集、储存和分发高质量的临床注释生物标本,用于生物标志物研究,使癌症患者受益。供资说明:北爱尔兰国家研究所从北爱尔兰公共卫生署卫生和社会保健研究与发展司获得核心供资,并从癌症中心之友获得慈善供资。NIB此前接受了英国癌症研究中心和英国前列腺癌协会的慈善资助。
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引用次数: 25
Dutch Parelsnoer Institute-Cerebrovascular Accident (CVA) Study: A Large Multicenter Clinical Biobank with Standardized Collection and Storage 荷兰paressnoer研究所脑血管事故(CVA)研究:一个标准化收集和储存的大型多中心临床生物库
Q2 Medicine Pub Date : 2018-07-19 DOI: 10.5334/OJB.41
H. J. V. Os, Y. Ruigrok, J. Manniën, E. Dijk, P. Koudstaal, G. Luijckx, P. Nederkoorn, R. Oostenbrugge, M. Visser, L. Kappelle, A. Algra, M. Wermer
The Dutch Parelsnoer Institute-Cerebrovascular accident (CVA) Study is part of the Parelsnoer Institute (PSI), initiated in 2007 by the Netherlands Federation of University Medical Centers (NFU). PSI is a cooperation of all eight Dutch University Medical Centers (UMCs) and aims at building large prospectively collected datasets with uniformly and standardized storage of biomaterials for complex diseases. Currently, PSI covers 18 disease-specific cohorts called ‘Pearls’, and this number is still growing. One of these cohorts is the Stroke or CVA Pearl. For each of the cohorts, PSI offers the UMCs an infrastructure and standard procedures for storing the specific biomaterials in their certified biobanks. Clinical data are stored in a central database after being pseudonymized to ensure patient privacy. For the Parelsnoer Institute-CVA Study, blood for genetic analysis, serum and plasma are collected according to nationally agreed standards. Currently (November 2017) the Stroke Pearl has stored blood samples with prospectively obtained clinical data of around 6000 patients in all UMCs combined. Blood samples and data are available for all researchers with a methodologically valid research proposal. Funding statement: PSI was founded in 2007 with a five year grant from the Dutch Government. From 2011 until now PSI is funded and facilitated by the Netherlands Federation of University Medical Centers (NFU) and its member institutions, independent of external funds. Additional funds from governmental sources, industry sponsors and charity are used for the analysis on the existing data and the expansion of PSI with new diseases.
荷兰Parelsnoer研究所脑血管事故(CVA)研究是Parelsnoer研究所(PSI)的一部分,由荷兰大学医学中心联合会(NFU)于2007年发起。PSI是所有8个荷兰大学医学中心(UMCs)的合作项目,旨在建立大型前瞻性收集数据集,统一和标准化存储复杂疾病的生物材料。目前,PSI覆盖了18个被称为“珍珠”的特定疾病队列,而且这个数字仍在增长。其中一个群体是中风或CVA珍珠。对于每个队列,PSI为UMCs提供基础设施和标准程序,用于在其认证的生物库中存储特定的生物材料。临床数据在假名后存储在中央数据库中,以确保患者隐私。在帕尔斯诺研究所和cva的研究中,用于基因分析的血液、血清和血浆是根据国家商定的标准收集的。目前(2017年11月),中风珍珠储存了所有UMCs中约6000名患者的血液样本和前瞻性临床数据。血液样本和数据可供所有研究人员与方法学上有效的研究计划。资金说明:PSI成立于2007年,由荷兰政府提供五年赠款。从2011年至今,PSI由独立于外部资金的荷兰大学医学中心联合会(NFU)及其成员机构资助和促进。来自政府来源、行业赞助商和慈善机构的额外资金用于分析现有数据和扩大有新疾病的公共卫生倡议。
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引用次数: 0
Bimetra Biobank: A High Quality Biobank Facility to Stimulate Translational Biomedical Research Bimetra生物库:一个高质量的生物库设施,以促进转化生物医学研究
Q2 Medicine Pub Date : 2018-04-23 DOI: 10.5334/OJB.37
V. T'joen, Sara Phlypo, S. Bekaert
Bimetra Biobank is the central high quality biorepository of University Hospital Ghent in collaboration with Ghent University (Belgium). Fully operational since 2015 in a new state-of-the-art biobank facility, Bimetra Biobank acts as a core facility for researchers and third parties looking for high-quality annotated clinical biospecimens. Bimetra Biobank stores about 120.000 clinical samples, both historical collections and prospective collections (disease-based collections, population-based collections and basic research collections) within well-defined and ethically approved research projects. Through a clear governance structure compliant with applicable laws, collections are operationally managed by Bimetra biobank personnel and samples releases are coordinated through collection specific coordinators and advisory boards. Biobank collections are open for collaborations to the international scientific community.
Bimetra生物库是根特大学医院与根特大学(比利时)合作的中心高质量生物库。Bimetra生物库自2015年以来在一个新的最先进的生物库设施中全面运营,是研究人员和第三方寻找高质量注释临床生物样本的核心设施。Bimetra生物库在经过明确定义和伦理批准的研究项目中存储了约1200000个临床样本,包括历史样本和前瞻性样本(基于疾病的样本、基于人群的样本和基础研究样本)。通过符合适用法律的明确治理结构,Bimetra生物库人员对采集进行运营管理,并通过特定采集协调员和咨询委员会协调样本发布。生物库收藏对国际科学界开放合作。
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引用次数: 5
Hospital-integrated Biobanking as a Service – The Interdisciplinary Bank of Biomaterials and Data Wuerzburg (ibdw) 医院综合生物银行服务——维尔茨堡生物材料和数据跨学科银行(ibdw)
Q2 Medicine Pub Date : 2018-04-23 DOI: 10.5334/OJB.38
J. Geiger, S. Both, S. Kircher, Michael Neumann, A. Rosenwald, R. Jahns
The ibdw was established in 2011 as one of 5 centralised national biobanks in Germany within the framework of the governmental funding program “Nationale Biobank-Initiative”. The ibdw is a joint core facility of both, the University Hospital and the Julius-Maximilians-University Wurzburg and acts as a faculty-wide service provider of human biological material for medical research. From the outset main emphasis was placed on comprehensive automation and seamless integration of sample collection in clinical routine workflows thereby securing highest quality standards. The ibdw collects fluid and tissue samples in parallel from patients, based on a broad informed consent, hence not limiting future research use.
ibdw成立于2011年,是德国政府资助计划“国家生物库倡议”框架内的5个中央国家生物库之一。ibdw是大学医院和维尔茨堡朱利叶斯·马克西米利安大学的联合核心设施,是医学研究人类生物材料的全系服务提供商。从一开始,主要强调临床常规工作流程中样本采集的全面自动化和无缝集成,从而确保最高质量标准。ibdw根据广泛的知情同意书,并行收集患者的液体和组织样本,因此不限制未来的研究用途。
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引用次数: 15
Tumorbank@uza: A Collection of Tissue, Fluid Samples and Associated Data of Oncology Patients for the Use in Translational Research Tumorbank@uza:肿瘤患者的组织、液体样本和相关数据的收集,用于转化研究
Q2 Medicine Pub Date : 2018-02-06 DOI: 10.5334/OJB.30
S. Goethals, A. D. Wilde, Katrien Lesage, E. Smits, P. Pauwels, M. Peeters
Tumorbank@UZA is an academic hospital integrated biobank that collects tissue, blood and urine samples from oncology patients. We work according to a quality management system and have established SOPs for all work procedures in the biobank. Tumorbank@UZA is funded by the National Cancer Plan, an initiative from the Belgian government since 2009. Samples from our biobank are available for both academic as well as commercial researchers, through a well-established access procedure. Currently the collection consists of more than 85.000 samples of more than 8000 patients. Funding statement: Tumorbank@UZA is funded by the National Cancer Plan (initiative 27) from the Ministry of Health of the Belgian Federal Government.
Tumorbank@UZA是一个学术性医院综合生物库,收集肿瘤患者的组织、血液和尿液样本。我们按照质量管理体系工作,并为生物库中的所有工作程序制定了SOP。Tumorbank@UZA由国家癌症计划资助,这是比利时政府自2009年以来的一项举措。通过完善的获取程序,我们的生物库样本可供学术和商业研究人员使用。目前,采集的样本包括8000多名患者的85.000多个样本。资金报表:Tumorbank@UZA由比利时联邦政府卫生部的国家癌症计划(倡议27)资助。
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引用次数: 8
The Brisbane Breast Bank 布里斯班乳房银行
Q2 Medicine Pub Date : 2018-02-06 DOI: 10.5334/OJB.33
A. Reed, J. Saunus, K. Ferguson, Colleen Niland, P. Simpson, S. Lakhani
The Brisbane Breast Bank (BBB) was established in 2005 with a view to collecting surplus tissue from every breast surgery patient at the Royal Brisbane and Women’s Hospital. This not-for-profit biobank provides resources on a collaborative basis, supporting local, national and international studies. The resource prides itself on its comprehensive clinico-pathology sample annotation. Since its inception, the remit of the BBB has expanded to the prospective collection of serial blood samples from patients at high risk of recurrence, and the collection of blood and tumour tissue from metastatic patients.
布里斯班乳房银行(BBB)成立于2005年,目的是从布里斯班皇家妇女医院的每位乳房手术患者那里收集多余的组织。这个非营利性的生物库在合作的基础上提供资源,支持地方、国家和国际研究。该资源以其全面的临床病理样本注释而自豪。自成立以来,血脑屏障的范围已扩大到从复发风险高的患者收集前瞻性连续血液样本,以及从转移性患者收集血液和肿瘤组织。
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引用次数: 13
The Radboud Biobank: A Central Facility for Disease-Based Biobanks to Optimise Use and Distribution of Biomaterial for Scientific Research in the Radboud University Medical Center, Nijmegen 内梅亨大学医学中心内梅亨生物库:基于疾病的生物库的中心设施,以优化生物材料的使用和分配,用于科学研究
Q2 Medicine Pub Date : 2018-02-06 DOI: 10.5334/OJB.36
P. Manders, J. Lutomski, C. Smit, D. Swinkels, G. Zielhuis
The Radboud Biobank offers disease-based biobanks a centralized facility to optimize the use and distribution of biomaterial for scientific research. Notably, two population biobanks are also included in this collection. All collections are professionally and sustainably maintained using high-quality and secure standardized protocols for ICT, legal-ethical aspects, sample collection, processing and storage, communication and distribution. The Radboud Biobank includes biomaterial (e.g. DNA, serum, plasma, tissue, urine and faeces – depending on the specific patient group), images, associated clinical data (patient, disease-specific and phenotypic data) and derived information (genotypic data, microarray gene expressions). Patient advocates and other relevant stakeholders are actively involved in the governance of the Radboud Biobank. Funding statement: The Radboud Biobank was implemented by the Radboudumc Executive Board as part of the university research infrastructure. It is a central facility for the Radboudumc, with guaranteed central support for at least 15 years. A governing strategic board, encompassing relevant stakeholder groups, oversees the operations of the Radboud Biobank. Two patient representatives are included in this strategic board, and one holds the position of chairperson.
Radboud生物库为基于疾病的生物库提供了一个集中的设施,以优化用于科学研究的生物材料的使用和分配。值得注意的是,两个种群生物库也包括在这个集合中。所有的藏品都是专业和可持续地维护,使用高质量和安全的标准协议,用于信息通信技术、法律和道德方面、样本收集、处理和储存、通信和分发。Radboud生物库包括生物材料(例如DNA、血清、血浆、组织、尿液和粪便——取决于特定的患者群体)、图像、相关临床数据(患者、疾病特异性和表型数据)和衍生信息(基因型数据、微阵列基因表达)。患者权益倡导者和其他相关利益攸关方积极参与Radboud生物银行的治理。资助说明:radbouduc生物库由radbouduc执行委员会作为大学研究基础设施的一部分实施。它是Radboudumc的中心设施,保证得到至少15年的中央支持。由相关利益相关团体组成的管理战略委员会负责监督Radboud生物银行的运营。该战略委员会包括两名患者代表,其中一人担任主席。
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引用次数: 15
The Tumour Bank at the Children’s Hospital at Westmead: An Australian Paediatric Cancer Biorepository Westmead儿童医院肿瘤库:澳大利亚癌症儿科生物库
Q2 Medicine Pub Date : 2018-02-06 DOI: 10.5334/OJB.34
Li Zhou, A. Yuksel, O. Markovich, Natalie Gabrael, D. Catchpoole
The Tumor Bank at The Children’s Hospital at Westmead was established in 1998 with the purpose of facilitating research into childhood malignancy through the active provision of well annotated, ethically collected tissue samples and providing a pathway for the Children Hospital at Westmead to engage in leading research initiatives, supporting international investigations and clinical trials. Within 20 years practice as a single institute biorepository, The Tumour Bank has established standard operating procedures for collection of tissue, blood and bone marrow that were integrated into routine patient management systems. In addition, three main operational areas have been developed: collection of biospecimens and written consent; management of clinical data and biospecimen inventory database; and implementation of an open access policy to support childhood cancer research around the world. Regulatory oversight is provided by the Tumour Bank Committee, Human Research Ethics Committee and Governance Department. This concerted effort has resulted in collecting 20340 specimens from 3788 patients within 20 years, and The Tumour bank has supported over 108 national and international research projects, and contributed to over 70 peer-reviewed publications to date, with a mean time–to-publication of 19.1 ± 9.0 months and average Impact Factor of 6.11 ± 4.53. In conclusion, the Children’s Hospital at Westmead Tumour Bank has demonstrated a sustained single institutional biorepository model for facilitating translational research of rare cancer. It has provided strong evidence that integration of a single institutional biobank into standard clinical practices would be the long-term pathway of valuable bio-resource for rare cancer research.
The Children’s Hospital at Westmead的肿瘤银行成立于1998年,其目的是通过积极提供精心注释的、合乎道德的组织样本来促进儿童恶性肿瘤的研究,并为Westmead儿童医院参与领先的研究倡议、支持国际调查和临床试验提供途径。在作为单一机构生物储存库的20年实践中,肿瘤银行建立了组织、血液和骨髓收集的标准操作程序,并将其纳入常规患者管理系统。此外,还发展了三个主要业务领域:收集生物标本和书面同意;临床数据和生物标本库存数据库的管理;实施开放获取政策,支持世界各地的儿童癌症研究。监管监督由肿瘤银行委员会、人类研究伦理委员会和治理部提供。在这一共同努力下,肿瘤库在20年内从3788名患者中收集了20340个标本,支持了108多个国家和国际研究项目,迄今为止发表了70多篇同行评议的论文,平均发表时间为19.1±9.0个月,平均影响因子为6.11±4.53。总之,韦斯特米德肿瘤银行的儿童医院已经展示了一种促进罕见癌症转化研究的持续的单一机构生物存储模式。它提供了强有力的证据,证明将一个单一的机构生物库整合到标准的临床实践中,将是罕见癌症研究宝贵生物资源的长期途径。
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引用次数: 0
Amniotic Fluid Cells Biobank for Research on Fetal Mesenchymal Stem Cells 羊水细胞生物库用于胎儿间充质干细胞的研究
Q2 Medicine Pub Date : 2018-02-06 DOI: 10.5334/OJB.35
Fecarotta Emanuela, S. Giovanna, Garofalo Giuseppa Maria, Damiani Gianfranca, Piazza Angela, Sacco Massimiliano, Renda Disma, G. Antonino, Cristian Catalano, M. Aurelio, Renda Maria Concetta
The research biobank “Anna Maria Ferraro Cutino” AOR-villa Sofia-Cervello, started in 2010 by a grant of the Sicilian Department of Health. Within the biobank are collected, characterized, stored and distributed amniotic fluids (AF) from amniocentesis performed for maternal age. Patients choose to donate to the biobank the first 3 ml of AF that cannot be used for prenatal diagnosis. AF and donor data are anonymously archived in a database, according to the standard ethical principles. Collateral biobanks are present to collect, storage and manage donor sera and DNA samples, to perform microbiological and genetic tests necessary for the unit release. Funding Statement: From 2009 to date this work is supported by: 1. “Franco e Piera Cutino” onlus Foundation, Palermo (Italy); 2. Health Department Sicilian Region; 3. Productive Activities Department Sicilian Region; 4. AOR “Villa Sofia –Cervello” (Palermo).
“安娜·玛丽亚·费拉罗·库蒂诺”研究生物库于2010年由西西里岛卫生部拨款启动。在生物库中收集、鉴定、储存和分发的羊水(AF)来自于孕妇年龄进行的羊膜穿刺术。患者选择将不能用于产前诊断的前3ml房颤捐献给生物库。根据标准的伦理原则,AF和捐赠者的数据匿名保存在数据库中。附属生物库用于收集、储存和管理供体血清和DNA样本,进行单位释放所需的微生物和基因检测。资助说明:2009年至今,本研究由以下机构资助:“Franco e Piera Cutino”onlus基金会,巴勒莫(意大利);2. 西西里岛地区卫生局;3.西西里岛地区生产活动司;4. AOR“Villa Sofia -Cervello”(巴勒莫)。
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引用次数: 0
The UK Clinical Research Collaboration (UKCRC) Tissue Directory and Coordination Centre: The UK’s Centre for facilitating the Usage of Human Samples for Medical Research 英国临床研究合作组织(UKCRC)组织目录和协调中心:英国促进医学研究人类样本使用的中心
Q2 Medicine Pub Date : 2017-05-18 DOI: 10.5334/OJB.31
P. Quinlan, E. Lawrence, Amir Pourabdolla, J. Sims, A. Gander, B. Fuller, B. Thomson, J. Garibaldi, B. Davidson
The UKCRC Tissue Directory and Coordination Centre was established to improve access to and utilisation of UK human tissue samples for medical research. The key output of the Centre is the creation of the UK’s first pan-disease Tissue Directory ( https://directory.biobankinguk.org/ ). Any researcher can search the Directory based on a series of simple key words including disease classification, age, sex, sample type, preservation details, quality indicators and datasets available. The Directory as of April 2017 contains 100 Bioresources. Researchers seeking fresh samples can also search for facilities that offer bespoke collection services. Future work of the Centre will be to explore greater standardisation of biobanking activities across the UK and to facilitate an inter-connected research infrastructure related to the use of human biosamples. Funding statement: The Centre is funded by a consortium, the UK Clinical Research Collaboration, and administered by the Medical Research Council, grant number: MR/M501748/1.
建立联合王国人体组织目录和协调中心是为了改善医学研究对联合王国人体组织样本的获取和利用。该中心的主要成果是创建了英国第一个泛疾病组织目录(https://directory.biobankinguk.org/)。任何研究人员都可以根据一系列简单的关键词,包括疾病分类、年龄、性别、样本类型、保存细节、质量指标和可用数据集,对该目录进行搜索。截至2017年4月,该目录包含100个生物资源。寻找新鲜样本的研究人员也可以寻找提供定制收集服务的机构。该中心未来的工作将是探索整个英国生物银行活动的更大标准化,并促进与人类生物样本使用相关的相互关联的研究基础设施。资助说明:该中心由联合王国临床研究合作组织资助,由医学研究理事会管理,资助号:MR/M501748/1。
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引用次数: 4
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Open Journal of Bioresources
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