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Heterogeneous multiscale method for high energy-density matter: Connecting kinetic theory and molecular dynamics 高能量密度物质的非均匀多尺度方法:连接动力学理论和分子动力学
Pub Date : 2020-09-01 DOI: 10.1016/j.jcpx.2020.100070
Gil Shohet , Jacob Price , Jeffrey Haack , Mathieu Marciante , Michael S. Murillo

We have developed a concurrent heterogeneous multiscale method (HMM) framework with a microscale molecular dynamics (MD) model and a macroscale kinetic Vlasov-BGK model. The kinetic model is formulated such that BGK collision times are the closure data obtained from MD. Using the H-theorem, we develop the mathematical link between the MD and the kinetic model. We examine three relaxation processes, energy, momentum, and bump-on-tail, using full microscale MD simulations as a reference solution. We find that solutions computed with the HMM framework offer a significant computational reduction (14×100×) compared with computing a full MD solution, with significant improvements in accuracy compared with a kinetic model using analytical collision times.

我们开发了一个具有微尺度分子动力学(MD)模型和宏观尺度动力学Vlasov BGK模型的并发异质多尺度方法(HMM)框架。动力学模型的公式化使得BGK碰撞次数是从MD获得的闭合数据。利用H定理,我们建立了MD和动力学模型之间的数学联系。我们使用全微尺度MD模拟作为参考解决方案,研究了三个弛豫过程,能量、动量和尾部碰撞。我们发现,与计算全MD解相比,使用HMM框架计算的解提供了显著的计算减少(14×−100×),与使用分析碰撞时间的动力学模型相比,精度显著提高。
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引用次数: 3
A moving mesh method for modelling defects in nematic liquid crystals 一种模拟向列相液晶缺陷的移动网格方法
Pub Date : 2020-09-01 DOI: 10.1016/j.jcpx.2020.100065
Craig S. MacDonald, John A. Mackenzie, Alison Ramage

The properties of liquid crystals can be modelled using an order parameter which describes the variability of the local orientation of rod-like molecules. Defects in the director field can arise due to external factors such as applied electric or magnetic fields, or the constraining geometry of the cell containing the liquid crystal material. Understanding the formation and dynamics of defects is important in the design and control of liquid crystal devices, and poses significant challenges for numerical modelling. In this paper we consider the numerical solution of a Q-tensor model of a nematic liquid crystal, where defects arise through rapid changes in the Q-tensor over a very small physical region in relation to the dimensions of the liquid crystal device. The efficient solution of the resulting six coupled partial differential equations is achieved using a finite element based adaptive moving mesh approach, where an unstructured triangular mesh is adapted towards high activity regions, including those around defects. Spatial convergence studies are presented using a stationary defect as a model test case, and the adaptive method is shown to be optimally convergent using quadratic triangular finite elements. The full effectiveness of the method is then demonstrated using a challenging two-dimensional dynamic Pi-cell problem involving the creation, movement, and annihilation of defects.

液晶的性质可以使用描述杆状分子局部取向变化的有序参数来建模。指向矢场中的缺陷可能由于外部因素而出现,例如施加的电场或磁场,或者包含液晶材料的单元的约束几何形状。了解缺陷的形成和动力学在液晶器件的设计和控制中很重要,并对数值建模提出了重大挑战。在本文中,我们考虑向列型液晶的Q张量模型的数值解,其中缺陷是通过Q张量在相对于液晶器件尺寸非常小的物理区域上的快速变化而产生的。使用基于有限元的自适应移动网格方法实现了所得六个耦合偏微分方程的有效解,其中非结构化三角形网格适用于高活动区域,包括缺陷周围的区域。以一个平稳缺陷为模型测试实例进行了空间收敛性研究,并用二次三角有限元证明了自适应方法的最优收敛性。然后,使用一个具有挑战性的二维动态Pi细胞问题来证明该方法的全部有效性,该问题涉及缺陷的产生、移动和消除。
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引用次数: 5
Multiphase flow modeling in multiscale porous media: An open-source micro-continuum approach 多尺度多孔介质中的多相流建模:一种开源的微连续体方法
Pub Date : 2020-09-01 DOI: 10.1016/j.jcpx.2020.100073
Francisco J. Carrillo , Ian C. Bourg , Cyprien Soulaine

A multiphase Darcy-Brinkman approach is proposed to simulate two-phase flow in hybrid systems containing both solid-free regions and porous matrices. This micro-continuum model is rooted in elementary physics and volume averaging principles, where a unique set of partial differential equations is used to represent flow in both regions and scales. The crux of the proposed model is that it tends asymptotically towards the Navier-Stokes volume-of-fluid approach in solid-free regions and towards the multiphase Darcy equations in porous regions. Unlike existing multiscale multiphase solvers, it can match analytical predictions of capillary, relative permeability, and gravitational effects at both the pore and Darcy scales. Through its open-source implementation, hybridPorousInterFoam, the proposed approach marks the extension of computational fluid dynamics (CFD) simulation packages into porous multiscale, multiphase systems. The versatility of the solver is illustrated using applications to two-phase flow in a fractured porous matrix and wave interaction with a porous coastal barrier.

提出了一种多相Darcy Brinkman方法来模拟包含无固体区域和多孔基质的混合系统中的两相流。这种微连续体模型植根于初等物理学和体积平均原理,其中使用一组独特的偏微分方程来表示区域和尺度中的流动。所提出的模型的关键在于,它在无固体区域渐近地倾向于流体的Navier-Stokes体积方法,在多孔区域渐近地趋向于多相Darcy方程。与现有的多尺度多相求解器不同,它可以在孔隙和达西尺度上匹配毛细管、相对渗透率和重力效应的分析预测。通过其开源实现hybridPorousInterFoam,所提出的方法标志着计算流体动力学(CFD)模拟包扩展到多孔多尺度、多相系统中。通过应用于裂隙多孔基质中的两相流以及波浪与多孔海岸屏障的相互作用,说明了求解器的多功能性。
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引用次数: 50
WITHDRAWN: Trace preserving quantum dynamics using a novel reparametrization-neutral summation-by-parts difference operator 撤回:利用一种新颖的无参数化部分求和差分算子的保迹量子动力学
Pub Date : 2020-09-01 DOI: 10.1016/j.jcpx.2020.100076
Oskar Ålund, Y. Akamatsu, Fredrik Laurén, Takahiro Miura, J. Nordström, A. Rothkopf
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引用次数: 10
A Smoothed Particle Hydrodynamics scheme for arbitrarily shaped rigid bodies within highly viscous fluids 高粘性流体中任意形状刚体的光滑粒子流体动力学方案
Pub Date : 2020-09-01 DOI: 10.1016/j.jcpx.2020.100068
Bastien Dietemann , Torsten Kraft , Harald Kruggel-Emden , Claas Bierwisch

We present a Smoothed Particle Hydrodynamics (SPH) scheme suitable to model spatially resolved flow of arbitrarily shaped rigid bodies within highly viscous fluids. Coupling to other methods is avoided by representing both fluid and solid phase by SPH particles. The scheme consists of two elements, an implicit viscosity solver and a rigid body solver, both of which are adapted from existing literature. We present how both methods can be coupled with ease and little modification. The scheme presented in this paper can be used for simulations of a representative volume element in which the motion of rigid bodies can be studied in defined velocity gradients composed of elongation and/or shear conditions. The scheme only requires stabilization by particle shifting. However, this causes the loss of exact momentum and energy conservation at the boundary between fluid and rigid bodies. Results are shown for both 2-dimensional and 3-dimensional simulations including academic cases with existing analytical solutions and industrially relevant cases of semi-dilute suspensions of rigid bodies of various shapes.

我们提出了一种光滑粒子流体动力学(SPH)方案,适用于模拟高粘性流体中任意形状刚体的空间分辨流动。通过用SPH粒子表示液相和固相,避免了与其他方法的耦合。该方案由两个单元组成,一个隐式粘度求解器和一个刚体求解器,这两个单元都改编自现有文献。我们介绍了如何将这两种方法简单地结合在一起,并且几乎没有修改。本文提出的方案可用于模拟具有代表性的体积单元,其中刚体的运动可在由伸长和/或剪切条件组成的定义速度梯度中进行研究。该方案只需要通过粒子移动来实现稳定。然而,这会导致在流体和刚体之间的边界处失去精确的动量和能量守恒。显示了二维和三维模拟的结果,包括现有分析解决方案的学术案例和各种形状刚体的半稀释悬浮液的工业相关案例。
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引用次数: 9
Euler-Lagrange modelling of dilute particle-laden flows with arbitrary particle-size to mesh-spacing ratio 任意粒径与网格间距比的稀颗粒流的欧拉-拉格朗日模型
Pub Date : 2020-09-01 DOI: 10.1016/j.jcpx.2020.100078
Fabien Evrard, Fabian Denner, Berend van Wachem

This paper addresses the two-way coupled Euler-Lagrange modelling of dilute particle-laden flows, with arbitrary particle-size to mesh-spacing ratio. Two-way coupled Euler-Lagrange methods classically require particles to be much smaller than the computational mesh cells for them to be accurately tracked. Particles that do not satisfy this requirement can be considered by introducing a source term regularisation operator that typically consists in convoluting the point-wise particle momentum sources with a smooth kernel. Particles that are larger than the mesh cells, however, generate a significant local flow disturbance, which, in turn, results in poor estimates of the fluid forces acting on them.

To circumvent this issue, this paper proposes a new framework to recover the local undisturbed velocity at the location of a given particle, that is the local flow velocity from which the disturbance due to the presence of the particle is subtracted. It relies upon the solution of the Stokes flow through a regularised momentum source and is extended to finite Reynolds numbers based on the Oseen flow solution. Owing to the polynomial nature of the regularisation kernel considered in this paper, a correction for the averaged local flow disturbance can be analytically derived, allowing to filter out scales of the flow motion that are smaller than the particle, which should not be taken into account to compute the interaction/drag forces acting on the particle. The proposed correction scheme is applied to the simulation of a particle settling under the influence of gravity, for varying particle-size to mesh-spacing ratios and varying Reynolds numbers. The method is shown to nearly eliminate any impact of the underlying mesh resolution on the modelling of a particle's trajectory. Finally, optimal values for the scale of the regularisation kernel are provided and their impact on the flow is discussed.

本文讨论了具有任意颗粒尺寸与网格间距比的稀颗粒流的双向耦合欧拉-拉格朗日模型。双向耦合的欧拉-拉格朗日方法通常要求粒子比计算网格单元小得多,以便精确跟踪它们。不满足这一要求的粒子可以通过引入源项正则化算子来考虑,该算子通常包括用平滑核卷积逐点粒子动量源。然而,大于网格单元的粒子会产生显著的局部流动扰动,这反过来又会导致对作用在其上的流体力的估计较差。为了避免这个问题,本文提出了一个新的框架来恢复给定颗粒位置的局部未扰动速度,即减去由于颗粒存在而引起的扰动的局部流速。它依赖于通过正则动量源的斯托克斯流的解,并基于Oseen流解扩展到有限雷诺数。由于本文中所考虑的正则化核的多项式性质,可以解析导出平均局部流动扰动的校正,从而过滤出小于粒子的流动运动尺度,在计算作用在粒子上的相互作用/阻力时不应考虑这些尺度。将所提出的校正方案应用于重力影响下颗粒沉降的模拟,以改变颗粒尺寸与网格间距比和雷诺数。该方法几乎消除了底层网格分辨率对粒子轨迹建模的任何影响。最后,给出了正则化核规模的最优值,并讨论了它们对流量的影响。
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引用次数: 16
Two-dimensional leapfrog scheme for trajectories of relativistic charged particles in static axisymmetric electric and magnetic field 静态轴对称电场和磁场中相对论带电粒子轨迹的二维跳跃格式
Pub Date : 2020-09-01 DOI: 10.1016/j.jcpx.2020.100079
Chuanren Wu, Ioannis Gr. Pagonakis, Stefan Illy, John Jelonnek

A method for the calculation of two-dimensional particle trajectories is proposed in this work. It makes use of the cylindrical symmetry and the simplification of the static electric field, so that there should be no systematic error for the centered large-orbit rotations nor for the acceleration or deceleration in a uniform electric field. The method also shows a lower error level than the standard Boris method in many cases. Typical applications of this method are for example, electron microscopes, electron guns and collectors of gyro-devices as well as of other vacuum tubes, which can be described in axisymmetric cylindrical coordinates. Besides, the proposed method enforces the conservation of canonical angular momentum by construction, which is expected to show its advantages in the simulation of cusp electron guns and other components relying on non-adiabatic transitions in the externally applied static magnetic field.

本文提出了一种计算二维粒子轨迹的方法。它利用了圆柱对称性和静电场的简化,使得中心大轨道旋转和均匀电场中的加速或减速都不应有系统误差。在许多情况下,该方法也显示出比标准Boris方法更低的误差水平。这种方法的典型应用是,例如,电子显微镜、电子枪和陀螺器件以及其他真空管的收集器,它们可以在轴对称圆柱坐标中描述。此外,该方法通过构造加强了正则角动量守恒,有望在模拟尖端电子枪和其他依赖于外部施加的静磁场中的非绝热跃迁的部件时显示出其优势。
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引用次数: 0
On the discretization of Laplace's equation with Neumann boundary conditions on polygonal domains 关于多边形域上具有Neumann边界条件的拉普拉斯方程的离散化
Pub Date : 2020-09-01 DOI: 10.1016/j.jcpx.2020.100072
Jeremy Hoskins , Manas Rachh

In the present paper we describe a class of algorithms for the solution of Laplace's equation on polygonal domains with Neumann boundary conditions. It is well known that in such cases the solutions have singularities near the corners which poses a challenge for many existing methods. If the boundary data is smooth on each edge of the polygon, then in the vicinity of each corner the solution to the corresponding boundary integral equation has an expansion in terms of certain (analytically available) singular powers. Using the known behavior of the solution, universal discretizations have been constructed for the solution of the Dirichlet problem. However, the leading order behavior of solutions to the Neumann problem is O(tμ) for μ(1/2,1/2) depending on the angle at the corner (compared to O(C+tμ) with μ>1/2 for the Dirichlet problem); this presents a significant challenge in the design of universal discretizations. Our approach is based on using the discretization for the Dirichlet problem in order to compute a solution in the “weak sense” by solving an adjoint linear system; namely, it can be used to compute inner products with smooth functions accurately, but it cannot be interpolated. Furthermore we present a procedure to obtain accurate solutions arbitrarily close to the corner, by solving a sequence of small local subproblems in the vicinity of that corner. The results are illustrated with several numerical examples.

本文描述了一类求解具有Neumann边界条件的多边形域上拉普拉斯方程的算法。众所周知,在这种情况下,解在拐角附近具有奇点,这对许多现有方法构成了挑战。如果边界数据在多边形的每条边上都是平滑的,那么在每个角的附近,对应边界积分方程的解具有某些(解析可用的)奇异幂的展开式。利用解的已知行为,构造了Dirichlet问题解的通用离散化。然而,对于μ∈(−1/2,1/2),Neumann问题解的前导阶行为是O(tμ),这取决于角处的角度(与μ>;Dirichlet问题的1/2);这对通用离散化的设计提出了重大挑战。我们的方法基于对狄利克雷问题使用离散化,以便通过求解伴随线性系统来计算“弱意义”上的解;也就是说,它可以精确地计算光滑函数的内积,但不能插值。此外,我们提出了一个程序,通过求解拐角附近的一系列小局部子问题,获得任意接近拐角的精确解。通过几个数值例子说明了结果。
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引用次数: 2
On an inconsistency of the arithmetic-average signal speed estimate for HLL-type Riemann solvers HLL型Riemann解算器算术平均信号速度估计的不一致性
Pub Date : 2020-09-01 DOI: 10.1016/j.jcpx.2020.100077
Nico Fleischmann, Stefan Adami, Nikolaus A. Adams

In this short note, we highlight the sensitivity of the HLL-type Riemann solver with respect to the choice of signal speed estimates and demonstrate a major deficiency of the arithmetic-average estimate. The investigation of two essential Riemann problems and a classical bow shock simulation reveals that inherent inconsistencies of the arithmetic-average estimate may lead to unexpected behavior and erroneous results.

在这篇简短的笔记中,我们强调了HLL型黎曼解算器在信号速度估计选择方面的敏感性,并证明了算术平均估计的主要不足。对两个重要的黎曼问题和一个经典的弓形冲击模拟的研究表明,算术平均估计的固有不一致可能导致意外行为和错误结果。
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引用次数: 1
A particle method for the homogeneous Landau equation 齐次Landau方程的粒子方法
Pub Date : 2020-06-01 DOI: 10.1016/j.jcpx.2020.100066
Jose A. Carrillo , Jingwei Hu , Li Wang , Jeremy Wu

We propose a novel deterministic particle method to numerically approximate the Landau equation for plasmas. Based on a new variational formulation in terms of gradient flows of the Landau equation, we regularize the collision operator to make sense of the particle solutions. These particle solutions solve a large coupled ODE system that retains all the important properties of the Landau operator, namely the conservation of mass, momentum and energy, and the decay of entropy. We illustrate our new method by showing its performance in several test cases including the physically relevant case of the Coulomb interaction. The comparison to the exact solution and the spectral method is strikingly good maintaining 2nd order accuracy. Moreover, an efficient implementation of the method via the treecode is explored. This gives a proof of concept for the practical use of our method when coupled with the classical PIC method for the Vlasov equation.

我们提出了一种新的确定粒子方法来数值近似等离子体的朗道方程。基于Landau方程梯度流的一个新的变分公式,我们正则化了碰撞算子以理解粒子解。这些粒子解解决了一个大型耦合ODE系统,该系统保留了Landau算子的所有重要性质,即质量、动量和能量守恒以及熵的衰减。我们在几个测试案例中展示了我们的新方法的性能,包括库仑相互作用的物理相关案例。与精确解和光谱法相比,在保持二阶精度方面表现得非常好。此外,还探讨了该方法通过树代码的有效实现。这为我们的方法与Vlasov方程的经典PIC方法相结合的实际应用提供了概念证明。
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引用次数: 20
期刊
Journal of Computational Physics: X
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