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Synthetic Biology: Approaches, Opportunities, Applications and Challenges 合成生物学:途径、机遇、应用和挑战
Pub Date : 2020-12-31 DOI: 10.34091/ajls.3.2.3
Synthetic biology (SynBio) is a very vast field of research that produces new biological parts, appliances, and systems. It is the application of engineering principles to design and construct new bio-based biologicals, devices and systems that exhibit functions not present in nature or to redesign the existing systems to perform specific tasks. Synthetic biology varies from other disciplines including system biology, biotechnology and genetic engineering. For instance, while system biology focuses on obtaining a quantitative understanding of the naturally existing biology systems, the synthetic biology focuses on engineering, designing, and synthesis of new novel biological functions utilizing the biological information drawn from systems biology analysis. SB utilizes computer algorithms to alter genetic sequence before synthesizing them in the laboratory. Moreover, SB employed gene shuffling and refactoring tools that may alter thousands of genetic elements of an organism at once. In the present article, we aim to discuss the basic approaches of synthetic biology. Furthermore, the application of synthetic biology on biomedical science, drug discovery development, bioenergy and agriculture will also be discussed. Finally the challenges facing the researchers in the field of synthetic biology such as those technical, ethical and safety will be also highlighted.
合成生物学(SynBio)是一个非常广阔的研究领域,它生产新的生物部件、设备和系统。它是应用工程原理来设计和构建新的生物基生物制品、设备和系统,这些生物制品、设备和系统表现出自然界不存在的功能,或重新设计现有系统以执行特定任务。合成生物学不同于其他学科,包括系统生物学、生物技术和基因工程。例如,系统生物学侧重于对自然存在的生物系统进行定量理解,而合成生物学则侧重于利用从系统生物学分析中获得的生物信息进行工程、设计和合成新的生物功能。在实验室合成之前,SB利用计算机算法改变基因序列。此外,合成生物学使用基因重组和重构工具,可以一次改变生物体的数千个遗传元素。在本文中,我们旨在讨论合成生物学的基本方法。此外,还将讨论合成生物学在生物医学科学、药物发现开发、生物能源和农业方面的应用。最后还将重点介绍合成生物学研究人员在技术、伦理和安全等方面面临的挑战。
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引用次数: 3
Antifungal resistance modulation of Aspergillus fumigatus isolates from brooder pneumonia affected birds by Eucalyptus globulus extracts 桉叶提取物对育苗肺炎禽烟曲霉分离株抗真菌抗性的调节作用
Pub Date : 2020-12-31 DOI: 10.34091/ajls.3.2.14
Brooder pneumonia is a common respiratory problem during brooding period of poultry. It is most frequently caused by Aspergillus fumigatus. Use of azole drugs for treatment and prophylaxis results in resistance. The aim of this study was to determine whether the phytochemicals of Eucalyptus globulus are modulating resistance in Aspergillus fumigatus. Lung samples n = 50 of dead broiler chicks were collected from different farms of Lahore. Out of 50 lung samples 28 % (14) were considered positive for Aspergillus fumigatus after observing their macroscopic, microscopic characteristics and by performing PCR by amplifying ITS1-ITS4 gene (597 base pairs) and RodA gene (313 base pairs). Kirby-Bauer disc diffusion test was performed 14 isolates (100 %) were resistant towards both Fluconazole and Ketoconazole whereas 11 (78.57 %) were resistant towards Itraconazole. Eucalyptus globulus leaves were collected, and these were identified. Three solvent extracts were prepared. Maximum yield was of ethanolic extract. Antifungal activity was evaluated by agar well diffusion method. Highest antifungal activity was shown by Eucalyptus globulus Ethanol followed by chloroform and hexane extract showed no activity against any isolate then minimum inhibitory concentration of plant extracts that previously showed antifungal activity against isolates were evaluated by broth microdilution method. Modulation effect was checked by combining antifungal drug one by one with subinhibitory concentration of plant extract evaluated previously by broth microdilution method. 5 isolates were subjected into this experiment which are all sensitive towards Eucalyptus globulus ethanol and chloroform extracts tested previously in agar well diffusion test and MIC values were also evaluated. It was concluded that when Itraconazole was combined with E. globulus Ethanol extract then resistance was modified. Data of modulation was analyzed by One-way ANOVA and it reported P value of <0.05. It was synergistic inhibitory effect when Itraconazole was combined with Eucalyptus globulus Ethanol extract.
育雏肺炎是禽类育雏期间常见的呼吸道疾病。最常见的是由烟曲霉引起的。使用唑类药物进行治疗和预防会导致耐药性。本研究的目的是确定蓝桉的植物化学物质是否调节烟曲霉的抗性。从拉合尔不同农场采集死亡肉鸡肺样本n = 50。观察50份肺样本的宏观、微观特征,并扩增ITS1-ITS4基因(597个碱基对)和RodA基因(313个碱基对)进行PCR检测,认为烟曲霉阳性的肺样本占28%(14份)。采用Kirby-Bauer圆盘扩散试验对氟康唑和酮康唑均耐药的菌株14株(100%),对伊曲康唑耐药的菌株11株(78.57%)。收集了蓝桉树叶,并对其进行了鉴定。制备了三种溶剂提取物。乙醇提取物收率最高。用琼脂孔扩散法测定其抑菌活性。桉树乙醇的抗真菌活性最高,其次是氯仿和己烷提取物,对任何一种分离物都没有抑制活性,然后用肉汤微量稀释法评估了之前对分离物有抑制活性的植物提取物的最低抑制浓度。将抗真菌药物与植物提取物的亚抑菌浓度分别用肉汤微量稀释法测定,考察其调节作用。本实验选取了5株对蓝桉乙醇和氯仿提取物均敏感的分离株进行琼脂孔扩散试验,并对其MIC值进行了评价。结果表明,伊曲康唑与球芽草乙醇提取物联用可提高其耐药性。调制数据采用单因素方差分析,P值<0.05。伊曲康唑与蓝桉乙醇提取物联用时具有协同抑制作用。
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引用次数: 0
A review regarding virology, etiology, prevalence and associated risk factors of Hepatitis A. 关于甲型肝炎的病毒学、病因学、流行和相关危险因素的综述。
Pub Date : 2020-12-31 DOI: 10.34091/ajls.3.2.12
Hepatitis A is an infectious disorder of the liver prompted by Hepatovirus A virus (HAV). It is a kind of viral hepatitis. It has naked nucleocapsid virus with a single stranded, positive polarity RNA. It is devoid of virion polymerase and has a single serotype. Transmission is via fecal–oral route. In contrast to Hepatitis B virus and Hepatitis C virus, blood borne transmission of HAV is infrequent because viremia is short-term and of low titer. Mostly instances, have few or no signs, specifically in younger ones. The virus replicates in the gastrointestinal tract and then spreads to the liver during a short-term viremic period. HAV is not cytopathic for the hepatocyte. Hepatocellular injury is triggered by immune attack by the cytotoxic T cells. The time among the infection and signs, in patients that progress them, is among two and six weeks. When the signs occur, they commonly last 8 weeks and might encompass nausea, vomiting, diarrhea, jaundice, pain in abdomen and fever. Around 10 to 15 percent of patients undergo a recurrence of signs at some stage in the six months after the preliminary infection. Acute liver failure may also seldom occur, with this being extra regular in elderly. No antiviral medication is available. The most suitable test to diagnose acute infection is IgM antibody. Isolation of the virus from clinical samples is not done. Vaccine consists of killed virus. Administration of immune globulin in the course of the incubation can alleviate the disease.
甲型肝炎是一种由甲型肝病毒(HAV)引起的肝脏感染性疾病。这是一种病毒性肝炎。它有带有单链正极性RNA的裸核衣壳病毒。它缺乏病毒粒子聚合酶,具有单一血清型。通过粪-口途径传播。与乙型肝炎病毒和丙型肝炎病毒相比,甲肝病毒的血液传播并不常见,因为病毒血症是短期的,而且滴度低。大多数情况下,很少或没有迹象,特别是在年轻人中。病毒在胃肠道中复制,然后在短期病毒血症期间扩散到肝脏。甲肝病毒对肝细胞没有细胞病变。肝细胞损伤是由细胞毒性T细胞的免疫攻击引发的。患者出现感染和体征的时间在两到六周之间。当症状出现时,通常持续8周,可能包括恶心、呕吐、腹泻、黄疸、腹部疼痛和发烧。大约10%至15%的患者在初步感染后的6个月内的某个阶段会出现症状复发。急性肝功能衰竭也很少发生,在老年人中更为常见。没有抗病毒药物可用。诊断急性感染最合适的检测是IgM抗体。没有从临床样本中分离病毒。疫苗由灭活的病毒组成。在潜伏期注射免疫球蛋白可减轻病情。
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引用次数: 0
Single Nucleotide Polymorphisms in Tumor Necrosis Factor-α and Susceptibility to HIV Infection in Local Population of Lahore Pakistan 巴基斯坦拉合尔地区人群肿瘤坏死因子-α单核苷酸多态性与HIV感染易感性
Pub Date : 2020-12-31 DOI: 10.34091/ajls.3.2.4
A single nucleotide polymorphism (SNP) is observed at -308 position of the promoter region of tumor necrosis factor (TNF- α) gene due to which TNF is categorized into TNF1 and TNF2 allele. TNF2 allele is associated with higher concentration of TNF- α which in turn is associated with HIV infection. In order to know the association between TNF2 and HIV infection n =75 HIV positive samples and n=15 HIV negative samples were observed for TNF polymorphism. It was found that among the infected patients 53 patients had TNF2.The total percentage of the patients and controls having TNF2 allele was found to be 63.34.%. Chi square value was significant showing that there is a strong correlation between HIV susceptibility and TNF SNPs (-308) of the promoter region.
肿瘤坏死因子(TNF- α)基因启动子区-308位点存在单核苷酸多态性(SNP),因此TNF可分为TNF1和TNF2等位基因。TNF2等位基因与较高浓度的TNF- α相关,而TNF- α又与HIV感染相关。为了了解TNF2与HIV感染的关系,我们观察了n= 75个HIV阳性样本和n=15个HIV阴性样本的TNF多态性。结果发现感染患者中有53例存在TNF2。患者和对照组携带TNF2等位基因的总比例为63.34%。卡方值显著表明HIV易感性与启动子区域的TNF snp(-308)有很强的相关性。
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引用次数: 0
A Review on Pharmacological and Nutritional Benefits of Mango (Mangifera indica Linn): A Remedy for Cancer, Diabetes and Gastrointestinal Infections 芒果(Mangifera indica Linn)的药理和营养价值综述:治疗癌症、糖尿病和胃肠道感染
Pub Date : 2020-12-31 DOI: 10.34091/ajls.3.2.8
Mango is one of the choicest fruits in the world because of its good flavour, attractive colour and fruity fragrance. It belongs to family Anacardiaceae having wide range of varieties and health benefits. It grows in tropical region and has good nutritional profile. Innumerable researches have been done around the world that demonstrated diversified nutritional and pharmacological benefits of Mangifera indica Linn. It has particular composition of nutrients and phytochemicals. Different parts of mango trees have different wide ranges of benefits. The flower, seeds, leaves, bark, raw as well as ripe fruits provide extensive variety of pharmacological, medicinal and many health benefits. In addition to the higher values of macronutrients as well as micronutrients, mangoes have a wide range of bioactive compounds present in different portions of plant for example, the primary active constituent present in mango is mangiferin. In this review article we reviewed a number of beneficial characteristics of mango including its antioxidant, anti-diabetic, anti-bacterial, gastric health, anti-cancer and anti-inflammatory activities.
芒果是世界上最好的水果之一,因为它的好味道,诱人的颜色和果香味。它属于红心科,品种广泛,有益健康。它生长在热带地区,具有良好的营养价值。世界各地已经进行了无数的研究,证明了芒果的多种营养和药理益处。它有特殊的营养成分和植物化学成分。芒果树的不同部位有不同的益处。它的花、种子、叶、树皮、生的和成熟的果实提供了广泛的药理、药用和许多健康益处。除了高含量的宏量营养素和微量营养素外,芒果还含有多种生物活性化合物,存在于植物的不同部分例如,芒果中存在的主要活性成分是芒果苷。本文综述了芒果的抗氧化、抗糖尿病、抗菌、胃保健、抗癌和抗炎等有益特性。
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引用次数: 0
The Role of Mitochondria in Alzheimer’s Disease and its Potential Therapies 线粒体在阿尔茨海默病中的作用及其潜在治疗方法
Pub Date : 2020-12-31 DOI: 10.34091/ajls.3.2.17
Alzheimer’s disease (AD) is a common form of dementia, affecting millions of people worldwide, mostly the elderly population. The gradual decline in cognitive functions, loss of memory, and sleep disorder are the most frequently reported in AD patients. Multiple studies have been carried out to find a potential therapeutic approach to prevent the progression of Alzheimer’s disease and increase the performance of cognitive abilities. Mitochondrial dysfunction leading to oxidative stress and other environmental factors, diet and lifestyle are the major risk factors. Mitochondria play an essential role and are a potential therapeutic target for treating and preventing AD progression. Various biochemical molecules involved in mitochondrial metabolic pathways are tested as directly acting on mitochondria. Numerous antioxidants are considered as a potential treatment for AD. Here, we highlighted the emerging mitochondrial base therapies and potent antioxidants that can be used in Alzheimer’s disease treatments.
阿尔茨海默病(AD)是一种常见的痴呆症,影响着全世界数百万人,其中大多数是老年人。认知功能逐渐下降、记忆丧失和睡眠障碍是AD患者最常见的症状。为了找到一种潜在的治疗方法来预防阿尔茨海默病的进展并提高认知能力的表现,已经进行了多项研究。线粒体功能障碍导致氧化应激等环境因素、饮食和生活方式是主要危险因素。线粒体起着至关重要的作用,是治疗和预防AD进展的潜在治疗靶点。参与线粒体代谢途径的各种生化分子被测试为直接作用于线粒体。许多抗氧化剂被认为是AD的潜在治疗方法。在这里,我们强调了新兴的线粒体碱基疗法和有效的抗氧化剂,可用于阿尔茨海默病的治疗。
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引用次数: 0
In Silico Identification of Novel Acute Myeloid Leukemia Associated Missense SNPs in Human CEBPA Gene 人CEBPA基因新型急性髓系白血病相关错义snp的计算机鉴定
Pub Date : 2020-12-31 DOI: 10.34091/ajls.3.2.2
Single nucleotide polymorphisms (SNPs) in CEBPA gene have been found to be associated with cancer especially Acute Myeloid Leukemia (AML). Therefore, the identification of functional and structural polymorphisms in CEBPA is important to study and discover therapeutics targets and potential malfunctioning. For this purpose, several bioinformatics tools were used for the identification of disease-associated nsSNPs, which might be vital for the structure and function of CEBPA, making them extremely important. In silico tools used in this study included SIFT, PROVEAN, PolyPhen2, SNP&GO and PhD-SNP, followed by ConSurf and I-Mutant. Protein 3D modelling was carried out using I-TASSER and MODELLER v9.22, while GeneMANIA and string were used for the prediction of gene-gene interaction in this regard. From our study, we found that the L345P, R333C, R339Q, V328G, R327W, L317Q, N292S, E284A, R156W, Y108N and F82L mutations were the most crucial SNPs. Additionally, the gene-gene interaction showed the genes having correlation with CEBPA’s co-expressions and importance in several pathways. In future, these 11 mutations should be investigated while studying diseases related to CEBPA, especially for AML. Being the first of its kind, future perspectives are proposed in this study, which will help in precision medicine. Animal models are of great significance in finding out CEBPA effects in disease.
CEBPA基因的单核苷酸多态性(snp)已被发现与癌症,特别是急性髓性白血病(AML)有关。因此,鉴定CEBPA的功能和结构多态性对于研究和发现治疗靶点和潜在的功能障碍具有重要意义。为此,使用了几种生物信息学工具来鉴定疾病相关的nssnp,这些nssnp可能对CEBPA的结构和功能至关重要,因此它们非常重要。本研究中使用的计算机工具包括SIFT、PROVEAN、PolyPhen2、SNP&GO和PhD-SNP,其次是ConSurf和I-Mutant。蛋白三维建模使用I-TASSER和modeler v9.22,预测基因-基因相互作用使用GeneMANIA和string。我们的研究发现,L345P、R333C、R339Q、V328G、R327W、L317Q、N292S、E284A、R156W、Y108N和F82L突变是最关键的snp。此外,基因-基因互作还显示了与CEBPA共表达相关的基因在多种途径中的重要性。未来,在研究与CEBPA相关的疾病,特别是AML时,应该对这11个突变进行研究。作为此类研究的首例,本研究提出了未来的展望,这将有助于精准医学的发展。动物模型对揭示CEBPA在疾病中的作用具有重要意义。
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引用次数: 0
Prevalence of Enteric Fever in the Local Population of Rawalpindi And Islamabad Pakistan 巴基斯坦拉瓦尔品第和伊斯兰堡当地居民肠热患病率
Pub Date : 2020-12-31 DOI: 10.34091/ajls.3.2.15
Enteric fever is the massive bacterial disease in global and caused by Salmonella typhi. It is known that humans are the only natural host and reservoir for S. typhi. That transmits enteric fever through the fecal-oral route through the ingestion of infected water and food. The prevalence rate is high in South Central and South-East Asian countries recorded as (>100/100,000) cases per year. The aim of designing of the present study, there is no specific epidemiology report present at Rawalpindi and Islamabad. Total of 500 blood samples were collected from patients showing sign and symptoms of enteric fever. Sample collected from different government and private hospitals, medical laboratories, and health organizations from November 2013 to April 2014. Immuno chromatographic technique (ICT) was used for the detection of enteric fever via typhoid test kit. Out of 500 samples, 368 (73.6 %) patients were found serologically negative while 132 (26.4%) were positive. Among the positive samples, 42 (31.8%) were adult samples that included 25 IgM, 12 IgG and 5 both IgM and IgG. Infected children of age 13-15 years were 30 (22.72%) with IgM 19, IgG 8 and both IgM and IgG 3. Thirty-one (31) samples were positive among children of age group 5-12 years with 15 IgM positive, 10 IgG positive and 3 both IgM and IgG positive. Furthermore, 29 (21.96 %) were positive among children of age group 1-4 years. This high incidence of enteric fever among susceptible outdoor patients and laboratories patient show that enteric fever is a serious health problem in Rawalpindi, Islamabad. Preventive measures such as vaccination, maintaining food hygiene and awareness campaign are required in the twin cities of Rawalpindi-Islamabad for the eradication of enteric fever.
肠热是由伤寒沙门氏菌引起的全球性大规模细菌性疾病。众所周知,人类是伤寒沙门氏菌的唯一天然宿主和宿主。它通过摄入受感染的水和食物,通过粪-口途径传播肠热。中南亚和东南亚国家的流行率很高,记录为每年(>100/100,000)例。设计本研究的目的是,在拉瓦尔品第和伊斯兰堡没有具体的流行病学报告。从表现出肠热体征和症状的患者中共采集了500份血液样本。样本于2013年11月至2014年4月从不同的政府和私立医院、医学实验室和卫生组织收集。采用免疫层析技术(ICT)对伤寒检测试剂盒进行肠热病检测。在500份样本中,368例(73.6%)患者血清学阴性,132例(26.4%)阳性。成人阳性42例(31.8%),其中IgM阳性25例,IgG阳性12例,IgM和IgG均阳性5例。13 ~ 15岁感染儿童中,IgM 19、IgM 8、IgM和IgM 3均感染的占22.72%。5 ~ 12岁儿童31例,其中IgM阳性15例,IgG阳性10例,IgM和IgG均阳性3例。1 ~ 4岁儿童中阳性29例(21.96%)。易感室外病人和实验室病人中肠热病的高发病率表明,肠热病是伊斯兰堡拉瓦尔品第的一个严重健康问题。拉瓦尔品第和伊斯兰堡这两个城市需要采取预防措施,如接种疫苗、保持食品卫生和开展宣传运动,以根除肠热病。
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引用次数: 0
Gloriosa superba L: A critical Review of Recent Advances superba L:最近进展的评论
Pub Date : 2020-12-31 DOI: 10.34091/ajls.3.2.5
Gloriosa superba is a flowering plant belongs to Colchicaceae. It refers to full of glory', and the superba refers ‘superb’ referring to the outstanding red and yellow flowers. G. superba is a highly toxic plant, due to the presence of an alkaloid, ‘Colchicine’. Adequate ingestion of this alkaloid could cause fatalities to humans and animals. Despite its toxicity, G. superba considered as a medicinal plant because of its medicinal constituents and properties such as colchicine, gloriosine, pungent, bitter, acrid, heating, anthelmintic, laxative, alexiteric, and abortifacient. G. superba utilized for the treatment of snakebite, scorpion stings, parasitic skin disease, urological pains, colic, chronic ulcers, piles, gonorrhoea, gout, infertility, wounds, arthritis, cholera, kidney problems, itching, leprosy, cancer, sexually transmitted disease, and countless other diseases. This plant listed under the threatened category due to its indiscreet reaping from the wild as medicinal industries widely use it for its colchicine content. Field study and secondary sources were used to abridge the information on the recent advancement study of G. superba. In the present review, the information regarding the occurrence, botanical description, propagation, medicinal application pharmacological, ethnomedicinal, biological, and toxicological studies of G. superba and its recent advancement has been summarized. The detailed study of G. superba with current trends helps the researcher to focus on the future development needed for its conservation.
秋水仙是秋水仙科的一种开花植物。它指的是“充满荣耀”,而superba指的是“极好的”,指的是突出的红色和黄色的花朵。由于秋水仙碱的存在,秋水仙碱是一种剧毒植物。摄入足够的这种生物碱会导致人类和动物死亡。尽管它有毒性,但由于其药用成分和特性,如秋水仙碱、栀子苷、辛辣、苦味、辛辣、发热、驱虫药、通便药、止血药和堕胎药,因此被认为是一种药用植物。G. superba用于治疗蛇咬伤、蝎子蜇伤、寄生虫皮肤病、泌尿系统疼痛、绞痛、慢性溃疡、痔疮、淋病、痛风、不孕症、伤口、关节炎、霍乱、肾脏问题、瘙痒、麻风病、癌症、性传播疾病和无数其他疾病。由于其秋水仙碱含量高,药用工业广泛使用这种植物,因此它被列为濒危植物。本文采用实地调查和二手资料相结合的方法,综述了近年来对大叶藻的研究进展。本文综述了其发生、植物描述、繁殖、药用、药理学、民族医学、生物学和毒理学等方面的研究进展。详细的研究和目前的趋势有助于研究人员关注其保护所需的未来发展。
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引用次数: 1
Selenium resistant bacteria enhance Zea mays growth parameters under selenium stress 耐硒菌对硒胁迫下玉米的生长参数有促进作用
Pub Date : 2020-12-31 DOI: 10.34091/ajls.3.2.16
Heavy metals normally accumulate in the environment and as a result they create various problems to life, especially to plants. In this study two selenium resistant bacteria, Bacillus pumils strain CrK08 and Bacillus licheniformis strain AsK03 were checked for their effect in enhancing growth of Zea mays in the clay pots experiment, under selenium stress. Both strains significantly promoted root length in control and in autoclaved soil. Number of roots from plant base was reduced in control and autoclave soil respectively. Moreover, the fresh weight and dry weight were reduced in control and autoclave soil plants. In selenium treated plants, fresh weight was high than in the non-treated plants. However, Strains also produced an increase in soluble protein content. Indole acetic acid (IAA) content was enhanced to and, while acid phosphatase activity was significantly lower in inoculated plants than the controls and peroxidase content reduced. Selenium content in control plants was high as compared to treated plants. So, these strains promote plant growth under Se stress (17 mg kg-1) in soil.
重金属通常会在环境中积累,从而给生命,尤其是植物造成各种问题。本研究通过泥罐试验,考察了两种抗硒菌——玉米芽孢杆菌CrK08和地衣芽孢杆菌AsK03在硒胁迫下对玉米生长的促进作用。两种菌株在对照和高压土壤中均显著提高了根长。在对照土壤和高压灭菌土壤中,植物基部的根系数量分别减少。此外,对照和蒸培土壤植株的鲜重和干重均有所降低。硒处理植株鲜重显著高于未处理植株。然而,菌株也产生可溶性蛋白含量增加。接种植株的吲哚乙酸(IAA)含量显著高于对照,酸性磷酸酶活性显著低于对照,过氧化物酶含量显著降低。对照植株的硒含量高于处理植株。因此,这些菌株在硒胁迫(17 mg kg-1)下促进了土壤中植物的生长。
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引用次数: 0
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