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From microbes to molecules. 从微生物到分子
Q3 Medicine Pub Date : 2022-01-01 Epub Date: 2022-06-26 DOI: 10.4103/tp.tp_34_22
Subhash Chandra Parija
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引用次数: 0
Molecular characterization of Giardia intestinalis assemblages in children among the rural and urban population of Pondicherry, India. 印度本地治里农村和城市人口儿童肠道贾第鞭毛虫组合的分子特征。
Q3 Medicine Pub Date : 2022-01-01 Epub Date: 2022-06-26 DOI: 10.4103/tp.TP_52_20
Dashwa Langbang, Rahul Dhodapkar, Subhash Chandra Parija, K C Premarajan, Nonika Rajkumari

Introduction: Giardiasis is one of the greatest public parasitic infections causing diarrheal and also known to be associated with high morbidity and mortality, among the children's particularly in developing countries with less cleanliness practices. Thus, studying genomic variety of Giardia intestinalis aids to improve our perspective related to the variability in the genome of the parasite.

Materials and methods: In this cross-sectional study, 1006 stool samples were collected from the rural (n = 500) and urban settings (n = 506) from the children (<15 years) with and without symptoms and were screened for the presence of G. intestinalis by polymerase chain reaction (PCR) targeting triosephosphate isomerase gene. Further, all PCR-positive amplicons were subjected to restriction fragment length polymorphism using RsaI restriction enzyme.

Results: Of the total 1006 stool samples, 500 samples from rural screened by PCR 108 (21%) were found to be positive for assemblage A, 116 (23.2%) belong to assemblage B, and 5 (1%) were mixed assemblages (A + B). Whereas in urban, of the 506 samples screened by PCR, 92 (18.1%) were found to be positive for assemblage A, 93 (18.3%) assemblage B, and 10 (1.9%) were mixed assemblages (A + B). No significant difference was found between the G. intestinalis assemblages with clinical details of symptomatic and asymptomatic in children.

Conclusions: This signifies the first study inspection in our location to shed lights and delivers some preliminary data on assemblages and subassemblages. The results suggest that anthroponotic transmission could be a foremost transmission path for giardiasis among the study population.

贾第虫病是引起腹泻的最严重的公共寄生虫感染之一,也已知与高发病率和死亡率有关,特别是在清洁习惯较少的发展中国家的儿童中。因此,研究肠贾第鞭毛虫的基因组多样性有助于提高我们对该寄生虫基因组变异性的认识。材料与方法:采用针对三磷酸异构酶基因的聚合酶链反应(PCR)方法,从农村地区(n = 500)和城市地区(n = 506)收集1006份儿童粪便样本。此外,所有pcr阳性扩增子都使用RsaI限制性内切酶进行限制性片段长度多态性。结果:在1006份粪便样本中,500份来自农村的粪便样本中,108份(21%)为A组合阳性,116份(23.2%)为B组合,5份(1%)为混合组合(A + B)。而在城市,506份样本中,92份(18.1%)为A组合阳性,93份(18.3%)为B组合阳性。10个(1.9%)为混合组合(A + B)。肠道菌群与儿童有症状和无症状的临床细节之间无显著差异。结论:这标志着在我们的位置上的第一次研究检查,揭示了一些关于组合和亚组合的初步数据。结果表明,人传可能是贾第虫病在研究人群中的主要传播途径。
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引用次数: 4
Internal transcribed spacer region 1 as a promising target for detection of intra-specific polymorphisms for Strongyloides stercoralis. 内转录间隔区1作为粪圆线虫种内多态性检测的一个有希望的靶点。
Q3 Medicine Pub Date : 2022-01-01 Epub Date: 2022-06-26 DOI: 10.4103/tp.tp_13_21
Yasmin Sultana, Fanrong Kong, Mandira Mukutmoni, Laila Fahria, Aleya Begum, Rogan Lee

Background: Strongyloides stercoralis, the causative agent of strongyloidiasis, is a parasitic worm that has larvae capable of reinfecting the same host. This nematode infection is therefore difficult to treat and to achieve total cure. Information about genetic variation and differences in drug susceptibility between strains is needed to improve treatment outcomes.

Aim: To develop a polymerase chain reaction (PCR) to identify the intra-species variation among 13 S. stercoralis isolates collected from Bangladesh, USA and Australia.

Material & methods: PCR assays were designed by using primers targeting S. stercoralis internal transcribed spacer (ITS) regions 1 and 2. Sequence data generated by these PCR products were compared to the existing ITS1/2, 18S and 28S rRNA gene sequences in GenBank for phylogenetic analysis.

Results: Intra-species single nucleotide polymorphisms (SNPs) were identified in ITS1 and in the 5.8S rRNA gene. The generated phylogram grouped the 13 isolates into dog, Orangutan and human clusters.

Conclusion: This method could be used as an epidemiological tool to study strain differences in larger collections of S. stercoralis isolates. The study forms the basis for further development of an ITS-based assay for S. stercoralis molecular epidemiological studies.

背景:粪圆线虫是一种寄生虫,其幼虫能够再次感染同一宿主,是圆线虫病的病原体。因此,这种线虫感染很难治疗和实现完全治愈。为了提高治疗效果,需要了解菌株之间的遗传变异和药物敏感性差异。目的:采用聚合酶链式反应(PCR)方法鉴定来自孟加拉国、美国和澳大利亚的13株粪球菌的种内变异。材料与方法:采用引物针对牛链球菌ITS 1区和2区设计PCR检测。将PCR产物生成的序列数据与GenBank中已有的ITS1/2、18S和28S rRNA基因序列进行系统发育分析。结果:在ITS1和5.8S rRNA基因中发现种内单核苷酸多态性(snp)。生成的系统图谱将13个分离株分为狗群、猩猩群和人群。结论:该方法可作为一种流行病学工具,用于研究大量粪球菌分离株的菌株差异。该研究为进一步开发基于its的粪球菌分子流行病学分析奠定了基础。
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引用次数: 1
High prevalence of neurocysticercosis among patients with epilepsy in a tertiary care hospital of Assam, India. 印度阿萨姆邦一家三级保健医院癫痫患者中神经囊虫病的高流行率。
Q3 Medicine Pub Date : 2022-01-01 Epub Date: 2022-06-26 DOI: 10.4103/tp.TP_72_20
K Rekha Devi, Debasish Borbora, Narayan Upadhyay, Dibyajyoti Goswami, S K Rajguru, Kanwar Narain
Background: Neurocysticercosis (NCC) is a parasitic disease of the central nervous system, which is caused by the metacestode of the pork tapeworm, Taenia solium. The present unicentric, hospital-based, cross-sectional study was undertaken to assess the contribution of NCC as a cause of active epilepsy among patients attending a tertiary health care center in Assam, India. Materials and Methods: Over a period of 2 years, 152 active epilepsy patients were investigated based on clinical, epidemiological, neuroimaging (contrast-enhanced computerized tomography), and immunological techniques to establish the diagnosis of NCC. A precoded questionnaire was administered to patients and/or guardians to collect detailed medical history. Results: Ninety-three cases (61.2%) fulfilled either definitive or probable diagnostic criteria for NCC. Anti-cysticercus immunoglobulin G antibodies were detected by ELISA and enzyme electro-immune transfer blot in 69 (45.4%) active epilepsy patients. Seroprevalence was higher in males, 46.6% (54/116); than in females, 41.7% (15/36), and increased significantly with age; peaking in the 20–39 years age group (36/76; χ2 = 5.64; P = 0.02). Among the seropositive cases, 54 (78.3%) were diagnosed with NCC. A significantly higher number of seropositive individuals were diagnosed with NCC in the 20–39 years age group as compared to the 40 years and above age group (χ2 = 6.28; P = 0.01). The association between seropositivity for NCC, and the number of lesions in the brain was statistically significant (χ2 = −8.33; P = 0.003). Conclusions: This study indicates that NCC is a major cause of active epilepsy in Assam. A high prevalence of pediatric NCC is also a major concern.
背景:神经囊虫病(NCC)是一种由猪带绦虫(Taenia solium)的中间寄生体引起的中枢神经系统寄生虫病。本研究是在印度阿萨姆邦一家三级医疗中心进行的单中心、以医院为基础的横断面研究,目的是评估NCC在患者中作为活动性癫痫病因的作用。材料与方法:对152例活动性癫痫患者进行为期2年的临床、流行病学、神经影像学(对比增强计算机断层扫描)和免疫学技术调查,以确定NCC的诊断。对患者和/或监护人进行预先编码的问卷调查,以收集详细的病史。结果:93例(61.2%)符合NCC的明确或可能诊断标准。对69例(45.4%)活动性癫痫患者采用ELISA和酶电免疫转移印迹法检测抗囊虫免疫球蛋白G抗体。男性血清阳性率较高,为46.6% (54/116);女性为41.7%(15/36),且随年龄增长显著增加;在20-39岁年龄组达到高峰(36/76;χ2 = 5.64;P = 0.02)。在血清阳性病例中,54例(78.3%)诊断为NCC。与40岁及以上年龄组相比,20-39岁年龄组诊断为NCC的血清阳性个体数量显著高于40岁及以上年龄组(χ2 = 6.28;P = 0.01)。NCC血清阳性与脑内病变数的相关性有统计学意义(χ2 = -8.33;P = 0.003)。结论:本研究表明,NCC是阿萨姆邦活动性癫痫的主要原因。儿童非细胞癌的高患病率也是一个主要问题。
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引用次数: 3
Utility of smear examination, culture, and serological tests in the diagnosis of visceral leishmaniasis/post-kala-azar dermal leishmaniasis at National Centre for Disease Control, Delhi. 在德里国家疾病控制中心使用涂片检查、培养和血清学试验诊断内脏利什曼病/黑热病后皮肤利什曼病。
Q3 Medicine Pub Date : 2022-01-01 Epub Date: 2022-06-26 DOI: 10.4103/tp.tp_7_21
Monil Singhai, Neeru Kakkar, Naveen Gupta, Manju Bala, Ram Singh, Sujeet K Singh

Introduction: A range of assays have been developed to detect specific antileishmanial antibody, such as rK 39 immunochromatographic test (ICT), KE 16 ICT, ELISA test, and indirect immunofluorescent antibody test (IFAT), which play a crucial role in serological diagnosis of visceral leishmaniasis (VL). However, limited published reports are available on the utility of serological test (IFAT test/rk 39), smear examination, and culture in the diagnosis of VL and post-kala-azar dermal leishmaniasis (PKDL) in our country.

Materials and methods: We present utility of serological test (IFAT test/rK 39), smear examination for Leishmania donovani (LD) bodies, and culture in 2589 samples from 2294 VL/PKDL suspected patients (January 2009-December 2019) tested in Centre for Arboviral and Zoonotic diseases, National Centre for Disease Control, New Delhi, India, for laboratory diagnosis of VL/PKDL.

Results: A total of 80/553 (14.4%) cases were confirmed of VL (74/522 cases by demonstration of LD bodies in bone marrow smear examination, 5/12 in splenic smear examination 1/19 by culture) and 4/21 (19.0%) cases were confirmed of PKDL (demonstration of LD bodies in slit skin smear examination. In our study 197/1368 (14.4%) cases were diagnosed positive by IFAT, 34/646 (5.2%) cases by rk 39 ICT for VL/PKDL by demonstration of specific antileishmanial antibodies.

Conclusion: As the goal of elimination of VL as a public health problem is approaching, apart from serological tests such as rk 39 and IFAT, direct methods of detection such as (parasitic demonstration in BM smear, culture, and molecular tests) for Leishmania may play a crucial role for achieving a correct diagnosis and treatment. We also concluded that IFAT though not field-friendly, its optimal use as an adjunct test with BM smear in all stages of infections may be required. Further rk39 is a simple, reliable, noninvasive, and field-friendly test for diagnosis VL, especially in endemic areas.

目前已建立了一系列检测特异性抗利什曼抗体的方法,如rk39免疫层析试验(ICT)、KE 16 ICT、ELISA试验和间接免疫荧光抗体试验(IFAT),在内脏利什曼病(VL)的血清学诊断中起着至关重要的作用。然而,关于血清学测试(IFAT测试/ rk39)、涂片检查和培养在诊断VL和黑热病后皮肤利什曼病(PKDL)中的应用,我国发表的报告有限。材料和方法:我们对印度新德里国家疾病控制中心虫媒病毒和人畜共患疾病中心检测的2294例VL/PKDL疑似患者(2009年1月至2019年12月)的2589份样本进行了血清学检测(IFAT检测/ rk39)、多诺瓦利什曼原虫(LD)体涂片检查和培养,用于VL/PKDL的实验室诊断。结果:VL确诊80/553例(14.4%),其中骨髓涂片显示LD体74/522例,培养脾涂片显示LD体5/12例(1/19),PKDL确诊4/21例(19.0%)。在我们的研究中,有197/1368例(14.4%)的病例经IFAT诊断为阳性,34/646例(5.2%)的病例经rk 39 ICT诊断为VL/PKDL阳性。结论:随着消灭利什曼原虫这一公共卫生问题的目标日益接近,除了rk39和IFAT等血清学检测外,利什曼原虫的直接检测方法(BM涂片、培养和分子检测中的寄生虫显示)可能在实现正确诊断和治疗方面发挥关键作用。我们还得出结论,IFAT虽然不适合现场使用,但在所有感染阶段,它可能需要作为BM涂片的辅助测试。此外,rk39是一种简单、可靠、无创和现场友好的VL诊断检测方法,特别是在流行地区。
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引用次数: 1
Relationship between incidence of lymphatic filariasis and incidence of COVID-19: An observation from endemic area. 流行区淋巴丝虫病发病与新冠肺炎发病关系的观察。
Q3 Medicine Pub Date : 2022-01-01 Epub Date: 2022-06-26 DOI: 10.4103/tp.tp_39_21
Pathum Sookaromdee, Viroj Wiwanitkit
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引用次数: 1
Breast filariasis masquerading as carcinoma: Cytologic diagnosis in two cases. 乳腺丝虫病伪装成癌:两例细胞学诊断。
Q3 Medicine Pub Date : 2022-01-01 Epub Date: 2022-06-26 DOI: 10.4103/tp.TP_11_20
Malvika Shastri, Annu Nanda

Filariasis is a common public health problem in the Indian subcontinent. Microfilariae are usually detected in the peripheral circulation; however, the clinical manifestations are related to the lymphatic system primarily. The breast is an uncommon site for filariasis, and the lesion clinically mimics malignancy. We should consider filariasis in the differential diagnoses of breast lumps, especially in endemic areas. Fine-needle aspiration cytology from the breast lump allows easy detection of filarial infection, and this can be managed by medical treatment, thereby avoiding surgical procedures.

丝虫病是印度次大陆常见的公共卫生问题。微丝蚴通常在外周循环中检测到;但临床表现主要与淋巴系统有关。乳腺是一种罕见的丝虫病的部位,其病变在临床上与恶性肿瘤相似。我们应该考虑丝虫病在鉴别诊断乳腺肿块,特别是在流行地区。乳房肿块的细针穿刺细胞学检查可以很容易地发现丝虫病感染,这可以通过药物治疗来控制,从而避免手术治疗。
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引用次数: 1
Comparison of gdh polymerase chain reaction-restriction fragment length polymorphism and tpi assemblage-specific primers for characterization of Giardia intestinalis in children. gdh聚合酶链反应-限制性片段长度多态性与tpi组合特异性引物在儿童肠贾第虫鉴定中的比较。
Q3 Medicine Pub Date : 2022-01-01 Epub Date: 2022-06-26 DOI: 10.4103/tp.tp_28_21
Heba Elhadad, Sarah Abdo, Aziza I Salem, Mostafa A Mohamed, Hend A El-Taweel, Eman A El-Abd

Background: Giardia is a diarrheagenic eukaryotic parasite that consists of at least eight morphologically identical but genetically distinct genotypes. Human giardiasis is caused mainly by A and B assemblages.

Aim and objectives: The study aimed to compare the performance of gdh polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) and tpi assemblage-specific primers in genotyping of G. intestinalis.

Materials and methods: Stool samples of 315 children were microscopically screened for G. intestinalis. Positive samples were genotyped using tpi assemblage-specific primers and gdh semi-nested PCR-RFLP techniques.

Results: The prevalence of Giardia was 18.1%. The detected genotypes using tpi and gdh approaches were assemblage A (15.8% vs. 12.7%) and assemblage B (36.8% vs. 74.5%) as single infections and mixed assemblages A and B (47.4% vs. 12.7%). The two approaches showed a moderate agreement (kappa index = 0.413, P < 0.001). PCR-RFLP of gdh gene revealed that sub-assemblages BIII and BIV were equally detected (30.9% each). The remaining samples were equally divided between sub-assemblage AII, mixed BIII and BIV, and mixed AII and BIII (12.7% each). A significant association was detected between the retrieved sub-assemblages and the presence of symptoms.

Conclusions: Although both approaches confirmed the predominance of assemblage B, the use of assemblage-specific primers is more effective in elucidating the true picture of mixed assemblage infection.

背景:贾第鞭毛虫是一种致腹泻的真核寄生虫,由至少8种形态相同但遗传上不同的基因型组成。人贾第虫病主要由A和B组合引起。目的与目的:比较gdh聚合酶链反应-限制性片段长度多态性(PCR-RFLP)和tpi组合特异性引物在大肠杆菌基因分型中的表现。材料与方法:对315例儿童粪便进行镜下肠梭菌筛选。采用tpi组合特异性引物和gdh半嵌套PCR-RFLP技术对阳性样品进行基因分型。结果:贾第鞭毛虫感染率为18.1%。tpi和gdh方法检测到的基因型分别为A组合(15.8%比12.7%)和B组合(36.8%比74.5%),分别为单一感染和A和B混合感染(47.4%比12.7%)。两种方法具有中等一致性(kappa指数= 0.413,P < 0.001)。gdh基因的PCR-RFLP结果显示,BIII亚组合和BIV亚组合的检出率相等(各占30.9%)。其余样本平均分为亚组合AII、混合BIII和BIV以及混合AII和BIII,各占12.7%。检测到检索到的子组合与症状的存在之间存在显著关联。结论:虽然两种方法都证实了组合B的优势,但使用组合特异性引物更有效地阐明了混合组合感染的真实情况。
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引用次数: 2
Human dicrocoeliosis with urticaria: A case report from India. 人二毛囊病伴荨麻疹:印度一例报告。
Q3 Medicine Pub Date : 2022-01-01 Epub Date: 2022-06-26 DOI: 10.4103/tp.TP_39_19
Niharika Lall, Abhijit Babanrao Deshmukh, Sandhya V Saoji

Human dicrocoeliosis caused by Dicrocoelium dendriticum is reported sporadically from various parts of the world. D. dendriticum, a liver fluke has a complex life cycle with two intermediate hosts‒the land snail and the ant. True human infection occurs by ingestion of the second intermediate host, but spurious infections have occurred after consumption of undercooked animal liver. We report a case of a 20-year-old female who presented with abdominal pain, diarrhea, and itchy skin rashes all over the body. Stool microscopy revealed numerous eggs of D. dendritricum. A brief discussion of the medical literature is presented.

由树突双星绦虫引起的人类双星绦虫病在世界各地都有零星报道。枝状吸虫是一种肝脏吸虫,它有一个复杂的生命周期,有两个中间宿主——蜗牛和蚂蚁。真正的人类感染是通过摄入第二中间宿主发生的,但在食用未煮熟的动物肝脏后会发生假感染。我们报告一例20岁的女性谁提出腹痛,腹泻,皮肤瘙痒皮疹全身。粪便显微镜显示大量的树突单胞菌卵。对医学文献进行了简要的讨论。
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引用次数: 1
Impact of oxidative stress in response to malarial infection during pregnancy: Complications, histological changes, and pregnancy outcomes. 氧化应激对孕期疟疾感染的影响:并发症、组织学变化和妊娠结局。
Q3 Medicine Pub Date : 2022-01-01 Epub Date: 2022-06-26 DOI: 10.4103/tp.TP_18_20
Valleesha N Chandrashekhar, Kishore Punnath, Kiran K Dayanand, Srinivas B Kakkilaya, Poornima Jayadev, Suchetha N Kumari, Rajeshwara N Achur, D Channe Gowda

Background and objectives: Pregnancy malaria is a major underestimated global public health problem. To understand the involvement of oxidative stress (OS) in the pathophysiology of placental malaria, OS biomarkers, malondialdehyde (MDA), uric acid (UA), and superoxide dismutase (SOD) levels were analyzed and correlated to placental histopathological changes and pregnancy outcomes.

Methods: A hospital-based study was conducted in Mangaluru, Karnataka, India, to analyze the changes in hematological parameters and the serum OS biomarker levels. Histological analysis of placenta, associated complications, and pregnancy outcomes were compared using Kruskal-Wallis test, and pairwise comparison between two groups was made by Mann-Whitney U-test. Correlations were calculated by Pearson's and Spearman's rank correlations.

Results: Among 105 pregnant women, 34 were healthy controls and the infected group comprised of Plasmodium Vivax (Pv) (n = 48), Plasmodium falciparum (Pf) (n = 13), and mixed (n = 10) malaria infections. Of 71 infected cases, 67.6% had mild malaria, whereas 32.4% had severe malaria. The white blood cell and C-reactive protein levels were found to increase, whereas hemoglobin, red blood cell, and platelet levels decreased during both types of malarial infections. The MDA and UA values increased and SOD levels decreased particularly during severe Pf infections. Histological changes such as syncytial knots, syncytial ruptures, and fibrinoid necrosis were observed particularly during Pf infections and leukocyte infiltration was observed in Pv malaria.

Conclusion: Evaluation of MDA, UA, and SOD levels can serve as an indicator of OS during pregnancy malaria. The OS during pregnancy may lead to complications such as severe anemia, pulmonary edema, intra uterine growth retardation, premature delivery, and low birth weight, not only during Pf but also in Pv malaria. It is important to create awareness among rural and immigrant population residing in Mangaluru and its surroundings about required preventive measures and free government-supported antenatal care services.

背景和目标:妊娠疟疾是一个被低估的重大全球公共卫生问题。为了了解氧化应激(OS)在胎盘疟疾病理生理学中的参与情况,我们分析了OS生物标志物、丙二醛(MDA)、尿酸(UA)和超氧化物歧化酶(SOD)水平,并将其与胎盘组织病理学变化和妊娠结局相关联:方法:在印度卡纳塔克邦芒格鲁进行了一项基于医院的研究,分析血液学参数和血清 OS 生物标志物水平的变化。胎盘组织学分析、相关并发症和妊娠结局的比较采用 Kruskal-Wallis 检验,两组间的配对比较采用 Mann-Whitney U 检验。相关性通过皮尔逊和斯皮尔曼等级相关性进行计算:在 105 名孕妇中,34 人为健康对照组,感染组包括间日疟原虫(Pv)(48 人)、恶性疟原虫(Pf)(13 人)和混合疟疾感染(10 人)。在 71 例感染病例中,67.6% 患有轻度疟疾,32.4% 患有重度疟疾。在两种类型的疟疾感染中,白细胞和 C 反应蛋白水平均升高,而血红蛋白、红细胞和血小板水平均下降。MDA 和 UA 值升高,SOD 水平下降,尤其是在严重的 Pf 感染期间。特别是在疟原虫感染时,可观察到合胞体结、合胞体破裂和纤维素坏死等组织学变化,而在Pv疟疾时可观察到白细胞浸润:结论:MDA、UA 和 SOD 水平的评估可作为妊娠疟疾期间 OS 的指标。妊娠期OS可能导致严重贫血、肺水肿、子宫内发育迟缓、早产和低出生体重等并发症,不仅在Pf疟疾期间如此,在Pv疟疾期间也是如此。必须提高居住在曼加鲁鲁及其周边地区的农村人口和移民对必要的预防措施和政府支持的免费产前保健服务的认识。
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引用次数: 0
期刊
Tropical Parasitology
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