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Multicenter Study of Diagnostic Tool for Patients with Hemophilia: From Bedside to Comprehensive Investigations. 血友病患者诊断工具的多中心研究:从床边到综合调查。
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2023-12-01 eCollection Date: 2023-01-01 DOI: 10.2147/TACG.S434470
Ampaiwan Chuansumrit, Rungrote Natesirinilkul, Nongnuch Sirachainan, Praguywan Kadegasem, Pacharapan Surapolchai, Noppawan Tangbubpha, Ketsuda Kempka, Tanyanee Khlangtan

Background: Hemophilia cannot be diagnosed in most laboratories of economically less-developed countries leading to high mortality and morbidity rates.

Aim: A diagnostic tool was established ranging from bleeding assessment and a simple bedside test of mixing venous clotting time (VCT) to comprehensive DNA analysis for patients with hemophilia.

Methods: Patients with known (n=80) and suspected hemophilia (n=14) were included. Their bleeding symptoms were initially evaluated using verified translated-Thai ISTH bleeding assessment tool. Then, blood samples were drawn using a two-syringe technique, 2 mL each was placed in three tubes, for the mixing VCT and citrate blood was kept for coagulogram and coagulation factor assay. Finally, DNA analysis was determined.

Results: A total of 94 patients with hemophilia (A68, B26) defined as severe (A 57, B 17), moderate (A 7, B 5), and mild degrees (A 4, B 4) with the mean (SD) age of 14.0 (11.7) years and 24 normal controls aged 25.5 (4.5), were enrolled in the study. The mean (SD) bleeding score of patients with hemophilia was 13.5 (5.5), which did not significantly differ between patients with hemophilia A and B. The mixing venous clotting time offered the presumptive diagnosis of hemophilia A and B, which were subsequently confirmed by the prolonged APTT, low FVIII:C and FIX:C and mutations on the factor VIII and IX genes.

Conclusion: A diagnostic tool for bleeding assessment, mixing venous clotting time, coagulogram, coagulation factor assay, and DNA analysis for patients with hemophilia has been established in the existing health-care system.

背景:血友病在经济欠发达国家的大多数实验室无法诊断,导致高死亡率和发病率。目的:为血友病患者建立一种从出血评估和简单的床边混合静脉凝血时间(VCT)检测到综合DNA分析的诊断工具。方法:纳入已知血友病(80例)和疑似血友病(14例)。他们的出血症状最初使用经过验证的泰语ISTH出血评估工具进行评估。然后,采用双注射器技术抽取血液,每支2 mL,分别置于三根管中,分别保存VCT和柠檬酸血进行凝血图和凝血因子测定。最后进行DNA分析。结果:共纳入94例重度(a57, b17)、中度(a7, b5)、轻度(a4, b4)血友病患者(A68, B26),平均(SD)年龄为14.0(11.7)岁,正常对照24例,年龄为25.5(4.5)岁。血友病患者的平均(SD)出血评分为13.5分(5.5分),血友病A和血友病B患者出血评分无显著差异。混合静脉凝血时间可推定血友病A和B,随后APTT延长,FVIII:C和FIX:C低,因子VIII和IX基因突变证实。结论:在现有的卫生保健系统中,已经建立了血友病患者出血评估、混合静脉凝血时间、凝血图、凝血因子测定和DNA分析的诊断工具。
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引用次数: 0
Eleven Years of Oncogenetic Consultations in a Swiss Center: Patient and Testing Characteristics. 在瑞士中心11年的肿瘤遗传学咨询:患者和测试特征。
IF 2.6 Q2 GENETICS & HEREDITY Pub Date : 2023-11-09 eCollection Date: 2023-01-01 DOI: 10.2147/TACG.S410261
Bastien Grandjean, Amina Scherz, Manuela Rabaglio

Introduction: Oncogenetic counseling has been provided at the University Hospital of Bern since 2004. Since the public announcement by Ms. Angelina Jolie in 2013 that she had undergone bilateral prophylactic mastectomy, other oncogenetic centers have reported an increase in consultations. We conducted a retrospective review of the oncogenetic consultations at our center to evaluate the presence and the consequences of a potential "Angelina Jolie effect" and to characterize this patient population over a decade.

Methods: All initial oncogenetic consultations between 2005 and 2015 were collected, using electronic records. Demographics, cancer type, testing, and mutation results, as well as consultation rates, were recorded. The yearly trends were analyzed using Joinpoint regression analysis (JPA).

Results: In total, 823 patient cases were included, mostly women (84%), half of them with a positive personal cancer history. A hereditary breast and ovarian cancer (HBOC) risk was the main reason for consultation (72%). Moreover, 22% of patients had a previously detected familial mutation. Two-thirds underwent testing, which yielded a positive test result in 31% of the cases. According to JPA, the consultation rate increased throughout the decade, with a significant upward trend from 2013. Rates of testing and positive results remained stable over time. Most patients (86%) fulfilled the referral criteria of published guidelines.

Discussion: At our center, we found retrospectively a disproportionate growth in the referral rate for HBOC cases compared to other oncological cases after the year 2013, but overall, no change in testing rates was detected.

自2004年以来,伯尔尼大学医院一直提供肿瘤遗传学咨询。自2013年安吉丽娜·朱莉(Angelina Jolie)公开宣布自己接受了双侧预防性乳房切除术以来,其他肿瘤遗传中心的咨询人数有所增加。我们对我们中心的肿瘤遗传学咨询进行了回顾性审查,以评估潜在的“安吉丽娜·朱莉效应”的存在和后果,并对这一患者群体在十年中的特征进行了描述。方法:收集2005 - 2015年所有首次肿瘤会诊病例,采用电子记录。记录了人口统计学、癌症类型、检测和突变结果以及咨询率。使用Joinpoint回归分析(JPA)分析年度趋势。结果:共纳入823例患者,以女性为主(84%),其中一半患者有个人癌症病史。遗传性乳腺癌和卵巢癌(HBOC)风险是咨询的主要原因(72%)。此外,22%的患者有先前检测到的家族突变。三分之二的人接受了检测,31%的病例检测结果呈阳性。根据JPA的数据,咨询率在过去十年中不断上升,自2013年以来呈显著上升趋势。随着时间的推移,检测率和阳性结果保持稳定。大多数患者(86%)符合已出版指南的转诊标准。讨论:在我们的中心,我们回顾性地发现,2013年后HBOC病例的转诊率与其他肿瘤病例相比有不成比例的增长,但总体而言,检测率没有变化。
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引用次数: 0
The Many Faces of Arrhythmogenic Cardiomyopathy: An Overview. 致心律失常性心肌病的多方面:综述。
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2023-11-01 eCollection Date: 2023-01-01 DOI: 10.2147/TACG.S383446
Hanna J Tadros, Christina Y Miyake, Debra L Kearney, Jeffrey J Kim, Susan W Denfield

Arrhythmogenic cardiomyopathy (AC) is a disease that involves electromechanical uncoupling of cardiomyocytes. This leads to characteristic histologic changes that ultimately lead to the arrhythmogenic clinical features of the disease. Initially thought to affect the right ventricle predominantly, more recent data show that it can affect both the ventricles or the left ventricle alone. Throughout the recent era, diagnostic modalities and criteria for AC have continued to evolve and our understanding of its clinical features in different age groups as well as the genotype to the phenotype correlations have improved. In this review, we set out to detail the epidemiology, etiologies, presentations, evaluation, and management of AC across the age continuum.

致心律失常性心肌病(AC)是一种涉及心肌细胞机电解耦的疾病。这导致了特征性的组织学变化,最终导致该疾病的致心律失常临床特征。最初被认为主要影响右心室,但最近的数据显示,它可以同时影响心室或单独影响左心室。在最近的时代,AC的诊断模式和标准不断发展,我们对其在不同年龄组的临床特征以及基因型与表型相关性的理解也有所提高。在这篇综述中,我们开始详细介绍整个年龄段AC的流行病学、病因、表现、评估和管理。
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引用次数: 0
Evaluating the Association Between Genetic Polymorphisms Related to Homocysteine Metabolism and Unexplained Recurrent Pregnancy Loss in Women. 女性同型半胱氨酸代谢相关基因多态性与不明原因复发性流产的相关性评价
IF 2.6 Q2 GENETICS & HEREDITY Pub Date : 2022-06-07 eCollection Date: 2022-01-01 DOI: 10.2147/TACG.S365281
Nhat Nguyen Ngoc, My Tran Ngoc Thao, Sang Trieu Tien, Son Vu Tung, Hoang Le, Hung Ho Sy, Tung Nguyen Thanh, Son Trinh The

Objective: To investigate the relationship between unexplained recurrent pregnancy loss (URPL) and polymorphisms of homocysteine metabolism-related genes in women.

Materials and methods: A case-control study included 90 women with two or more consecutive unexplained pregnancy losses and 92 controlled women without miscarriage history; the female participants were in the age category of 18-35 years. The high-resolution melting technique was used to detect the single-nucleotide variants related to homocysteine metabolism disorder, namely MTHFR C677T, MTHFR A1298C, MTR A2756G, and MTRR A66G polymorphism.

Results: The MTHFR C677T polymorphism had significantly correlation with URPL. Indeed, the frequency of the677T allele and genotypes (677CT, 677TT) in the URPL group was significantly higher than that in the control group (p < 0.05). However, the allele, as well as genotype distribution of MTHFR A1298C, MTR A2756G, and MTRR A66G polymorphisms showed no significant difference (p > 0.05). MTHFR 677CT-1298AC genotype combination led to a 9.0-fold increased risk of URPL (OR 9.0; 95% CI, 2.25-35.99; p = 0.001), while the risk increased 10.0-fold (OR 10.0; 95% CI, 1.8-55.53; p = 0.008) when participants had more than the 3 variant loci.

Conclusion: The MTHFR C677T polymorphism was a risk factor for URPL, and determining the MTHFR C677T polymorphism had a potential prediction of URPL risk. Moreover, the MTHFR C677T and MTHFR A1298C joint mutants might have a synergistic effect on URPL. Conversely, there is a lack of evidence suggesting the URPL risk of MTHFR A1298C, MTR A2756G, and MTRR A66G polymorphisms.

目的探讨女性不明原因复发性流产(URPL)与同型半胱氨酸代谢相关基因多态性的关系。材料和方法一项病例对照研究包括90名连续两次或两次以上不明原因流产的妇女和92名无流产史的对照妇女;女性参与者的年龄在18-35岁之间。采用高分辨率熔解技术检测同型半胱氨酸代谢紊乱相关的单核苷酸变异,即MTHFR C677T、MTHFR A1298C、MTR A2756G和MTRR A66G多态性。结果MTHFR C677T多态性与URPL存在显著相关性。事实上,URPL组677T等位基因和基因型(677CT,677TT)的频率显著高于对照组(p<0.05),MTHFR 677CT-1298AC基因型组合导致URPL风险增加9.0倍(OR 9.0;95%CI,2.25–35.99;p=0.001),而当参与者具有3个以上的变异基因座时,风险增加10.0倍(OR 10.0;95%CI:1.8–55.53;p=0.008)。结论MTHFR C677T基因多态性是URPL的危险因素,检测MTHFR C6 77T基因的多态性有可能预测URPL的风险。此外,MTHFR C677T和MTHFR A1298C联合突变体可能对URPL具有协同作用。相反,缺乏证据表明MTHFR A1298C、MTR A2756G和MTRR A66G多态性存在URPL风险。
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引用次数: 0
Prominent Mutation of Intron 22 Inversion in Sporadic Hemophilia: Is It Worth the Antenatal Screening? 散发性血友病内含子22倒置的显著突变:值得产前筛查吗?
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2022-05-01 DOI: 10.2147/TACG.S363132
W. Sasanakul, A. Chuansumrit, N. Sirachainan, P. Kadegasem
Background Adequate replacement for patients with hemophilia is costly, especially in countries with limited resources. Objective Factor VIII gene mutations among Thai patients with hemophilia A were analyzed for the most common mutation. The cost-effectiveness of finding one female without family history of hemophilia possessing the most common factor VIII mutation was compared with the cost of treating one patient with hemophilia. Methods In all, 109 unrelated patients with hemophilia A, defined as sporadic cases (n=58) and hereditary cases (n=51), were enrolled for genotypic analysis. Results Intron 22 inversion was prominently found in 34 sporadic (58.6%) and 27 hereditary (51.9%) cases. The screening for intron 22 inversion among females without family history of hemophilia at antenatal care has been optionally suggested. A female with a positive result will undergo further prenatal diagnosis of hemophilia in her male offspring. On the contrary, a female with a negative test result remains at risk to have a hemophiliac son caused by other factor VIII gene mutations not included in the screening but the risk is not as high as intron 22 inversion. Although the screening of factor VIII mutation among females without family history of hemophilia is against the current practice, it has been initiated due to the inadequate treatment provided to patients with hemophilia in countries with limited resources. The study calculated approximately one female with intron 22 inversion would exist among 17,064 females without family history of hemophilia. The cost of screening (194,870 USD) was much less than that of treating one patient with hemophilia from birth to 40 years of age by the current regimen (378,000 USD). Conclusion Implementing antenatal screening of intron 22 inversion among females without family history of hemophilia is optionally suggested, especially in economically less-developed countries with inadequate treatment service for patients with hemophilia.
背景对血友病患者进行充分的替换是昂贵的,尤其是在资源有限的国家。目的分析泰国A型血友病患者中最常见的因子VIII基因突变。将发现一名无血友病家族史且具有最常见因子VIII突变的女性的成本效益与治疗一名血友病患者的成本进行比较。方法对109例无关的A型血友病患者进行基因型分析,包括散发病例(n=58)和遗传病例(n=51)。结果34例散发性病例(58.6%)和27例遗传性病例(51.9%)出现内含子22倒置。在没有血友病家族史的女性中,有人建议在产前护理中筛查内含子22倒置。阳性结果的女性将在其男性后代中接受进一步的血友病产前诊断。相反,检测结果呈阴性的女性仍有可能因筛查中未包括的其他因子VIII基因突变而患上血友病,但风险没有内含子22倒置那么高。尽管在没有血友病家族史的女性中筛查因子VIII突变是不符合目前的做法的,但由于在资源有限的国家为血友病患者提供的治疗不足,这项工作已经开始。该研究计算出,在17064名没有血友病家族史的女性中,大约有一名内含子22倒置的女性。筛查费用(194870美元)远低于目前方案治疗一名从出生到40岁的血友病患者的费用(378000美元)。结论建议在没有血友病家族史的女性中进行内含子22倒置的产前筛查,特别是在经济欠发达、血友病患者治疗服务不足的国家。
{"title":"Prominent Mutation of Intron 22 Inversion in Sporadic Hemophilia: Is It Worth the Antenatal Screening?","authors":"W. Sasanakul, A. Chuansumrit, N. Sirachainan, P. Kadegasem","doi":"10.2147/TACG.S363132","DOIUrl":"https://doi.org/10.2147/TACG.S363132","url":null,"abstract":"Background Adequate replacement for patients with hemophilia is costly, especially in countries with limited resources. Objective Factor VIII gene mutations among Thai patients with hemophilia A were analyzed for the most common mutation. The cost-effectiveness of finding one female without family history of hemophilia possessing the most common factor VIII mutation was compared with the cost of treating one patient with hemophilia. Methods In all, 109 unrelated patients with hemophilia A, defined as sporadic cases (n=58) and hereditary cases (n=51), were enrolled for genotypic analysis. Results Intron 22 inversion was prominently found in 34 sporadic (58.6%) and 27 hereditary (51.9%) cases. The screening for intron 22 inversion among females without family history of hemophilia at antenatal care has been optionally suggested. A female with a positive result will undergo further prenatal diagnosis of hemophilia in her male offspring. On the contrary, a female with a negative test result remains at risk to have a hemophiliac son caused by other factor VIII gene mutations not included in the screening but the risk is not as high as intron 22 inversion. Although the screening of factor VIII mutation among females without family history of hemophilia is against the current practice, it has been initiated due to the inadequate treatment provided to patients with hemophilia in countries with limited resources. The study calculated approximately one female with intron 22 inversion would exist among 17,064 females without family history of hemophilia. The cost of screening (194,870 USD) was much less than that of treating one patient with hemophilia from birth to 40 years of age by the current regimen (378,000 USD). Conclusion Implementing antenatal screening of intron 22 inversion among females without family history of hemophilia is optionally suggested, especially in economically less-developed countries with inadequate treatment service for patients with hemophilia.","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"15 1","pages":"49 - 54"},"PeriodicalIF":3.1,"publicationDate":"2022-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41392044","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Molecular Genetic Screening of Neonatal Intensive Care Units: Hyperbilirubinemia as an Example 新生儿重症监护病房的分子遗传筛查:以高胆红素血症为例
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2022-05-01 DOI: 10.2147/TACG.S362148
Yuqi Yang, Yu Wang, Lingna Zhou, W. Long, Binsheng Yu, Huaiyan Wang
Objective To explore the clinical value of newborn genomic screening (nGS) for neonatal intensive care units (NICU) infants (taking neonatal hyperbilirubinemia as an example). Methods Dried blood spots (DBSs) were collected after 72 hours of birth. The tandem mass spectrometry (TMS) screening and Angel Care genomic screening (GS, based on Targeted next-generation sequencing) were performed at the same time. Results Ninety-six hyperbilirubinemia newborns were enrolled in this study and none was identified with inborn errors of metabolism (IEM) by TMS, while 6 infants (6.25%, 6/96) were suspected to have a genetic disorder by Angel Care, including 2 cases of glucose-6-phosphate dehydrogenase deficiency (G6PD), and 1 case of maple syrup urine disease type 1B (MSUD1B), autosomal recessive deafness 1A (DFNB1A), Leber hereditary optic neuropathy (LHON), thyroid dyshormonogenesis 6 (TDH6) each. In addition, 44 infants (45.8%) were detected having at least one variant which conferred a carrier status for a recessive childhood-onset disorder. A total of 33 out of 60 variants (55.0%) reported for carrier status were pathogenic (P), 24 (40.0%) were likely pathogenic (LP), and 3 variants were variant of uncertain significance (VUS). Top six common genes of carrier status were GJB2, DUOX2, PRODH, ATP7B, SLC12A3, SLC26A4. Two newborns showed abnormalities in elementary screening of TMS, but were confirmed as false positive after recall. Their results of Angel Care did not found abnormality. Conclusion Using neonatal hyperbilirubinemia as an example, genome sequencing screening can find more evidence of genetic variation in NICU newborns, and “Angel Care” is an effective method.
目的以新生儿高胆红素血症为例,探讨新生儿基因组筛查(nGS)对新生儿重症监护室(NICU)婴儿的临床应用价值。方法出生72小时后采集干血点。同时进行串联质谱(TMS)筛查和Angel Care基因组筛查(GS,基于靶向下一代测序)。结果96例高胆红素血症新生儿被纳入本研究,经颅磁刺激(TMS)未发现先天性代谢异常(IEM),而Angel Care怀疑6例婴儿(6.25%,6/96)患有遗传性疾病,其中2例为葡萄糖-6-磷酸脱氢酶缺乏症(G6PD),1例为1B型枫糖浆尿病(MSUD1B),常染色体隐性遗传性耳聋1A(DFNB1A)、Leber遗传性视神经病变(LHON)、甲状腺激素异常发生6(TDH6)。此外,44名婴儿(45.8%)被检测出至少有一种变异,该变异赋予隐性儿童发病障碍的携带者地位。在报告的携带者状态的60个变体中,共有33个(55.0%)是致病性的(P),24个(40.0%)可能是致病性(LP),3个变体是不确定显著性的变体(VUS)。携带者状态的前六个常见基因是GJB2、DUOX2、PRODH、ATP7B、SLC12A3、SLC26A4。两名新生儿在TMS的初步筛查中表现出异常,但在召回后被确认为假阳性。他们的Angel Care结果没有发现异常。结论以新生儿高胆红素血症为例,基因组测序筛查可以发现新生儿重症监护室新生儿遗传变异的更多证据,“天使护理”是一种有效的方法。
{"title":"Molecular Genetic Screening of Neonatal Intensive Care Units: Hyperbilirubinemia as an Example","authors":"Yuqi Yang, Yu Wang, Lingna Zhou, W. Long, Binsheng Yu, Huaiyan Wang","doi":"10.2147/TACG.S362148","DOIUrl":"https://doi.org/10.2147/TACG.S362148","url":null,"abstract":"Objective To explore the clinical value of newborn genomic screening (nGS) for neonatal intensive care units (NICU) infants (taking neonatal hyperbilirubinemia as an example). Methods Dried blood spots (DBSs) were collected after 72 hours of birth. The tandem mass spectrometry (TMS) screening and Angel Care genomic screening (GS, based on Targeted next-generation sequencing) were performed at the same time. Results Ninety-six hyperbilirubinemia newborns were enrolled in this study and none was identified with inborn errors of metabolism (IEM) by TMS, while 6 infants (6.25%, 6/96) were suspected to have a genetic disorder by Angel Care, including 2 cases of glucose-6-phosphate dehydrogenase deficiency (G6PD), and 1 case of maple syrup urine disease type 1B (MSUD1B), autosomal recessive deafness 1A (DFNB1A), Leber hereditary optic neuropathy (LHON), thyroid dyshormonogenesis 6 (TDH6) each. In addition, 44 infants (45.8%) were detected having at least one variant which conferred a carrier status for a recessive childhood-onset disorder. A total of 33 out of 60 variants (55.0%) reported for carrier status were pathogenic (P), 24 (40.0%) were likely pathogenic (LP), and 3 variants were variant of uncertain significance (VUS). Top six common genes of carrier status were GJB2, DUOX2, PRODH, ATP7B, SLC12A3, SLC26A4. Two newborns showed abnormalities in elementary screening of TMS, but were confirmed as false positive after recall. Their results of Angel Care did not found abnormality. Conclusion Using neonatal hyperbilirubinemia as an example, genome sequencing screening can find more evidence of genetic variation in NICU newborns, and “Angel Care” is an effective method.","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"15 1","pages":"39 - 48"},"PeriodicalIF":3.1,"publicationDate":"2022-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44952510","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
CTLA-4 CT-60 A/G and CTLA-4 1822 C/T Gene Polymorphisms in Indonesians with Type 1 Diabetes Mellitus 印尼1型糖尿病患者CTLA-4 CT-60 A/G和CTLA-4 1822 C/T基因多态性
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2022-04-29 DOI: 10.2147/TACG.S359158
N. Rochmah, M. Faizi, Suhasta Nova, R. A. Setyoningrum, S. Basuki, A. Endaryanto
Introduction CTLA-4 gene polymorphism plays an important role in children with type 1 diabetes mellitus (T1DM). However, data on this subject vary among different races and ethnics. Purpose To analyze CTLA-4 CT-60 A/G and CTLA-4 1822 C/T gene polymorphism among children with T1DM compared to control. Patients and Methods The CTLA-4 CT-60 A/G and CTLA-4 1822 C/T gene polymorphism in children with T1DM using polymerase chain reaction-restriction fragment length polymorphism in 25 T1DM and 25 controls. The inclusion criteria were patients regularly controlled at the Pediatric Endocrine Outpatient Clinic of Dr. Soetomo Hospital, aged 4–18 years and willing to join this study and the exclusion criteria were T1DM patients hospitalized in the pediatric intensive care unit. In the control group, the inclusion criteria were healthy children, aged 4–18 years and willing to join this study. The exclusion criteria included children with ongoing infection, history of other autoimmune diseases, allergies, or malignancy. Results The mean age was 12.48 years old, and the mean of T1DM onset was 9.28 years old. The CTLA-4 1822 T allele observed in 62% T1DM and 56% in control (p = 0.388, OR = 0.78, 95% CI = 0.44–1.37) and CTLA-4 CT-60 G allele observed in 52% T1DM and 58% in control (p = 0.393, OR = 1.27, 95% CI = 0.73–2.22). The C/T genotypes was significantly higher in control group (p = 0.045, OR = 3.27, 95% CI = 1.00–10.62). The A/G genotypes was commonly found in control group (p = 0.765, OR = 1.20, 95% CI = 0.37–3.86). The Javanese was the dominant ethnic group in our study. Conclusion The frequency of CTLA-4 CT-60 A/G polymorphism almost equivalent in T1DM and control group. However, CTLA-4 1822 C/T polymorphism was more prevalent in the control group; thus, this genotype may have a protective effect against T1DM.
CTLA-4基因多态性在儿童1型糖尿病(T1DM)中起重要作用。然而,关于这一主题的数据在不同的种族和民族之间有所不同。目的分析T1DM患儿CTLA-4 CT-60 A/G和CTLA-4 1822 C/T基因与对照组的多态性。患者与方法采用聚合酶链反应-限制性片段长度多态性对25例T1DM患儿和25例对照组的CTLA-4 CT-60 A/G和CTLA-4 1822 C/T基因多态性进行分析。纳入标准是在Dr. Soetomo医院儿科内分泌门诊定期对照、年龄4-18岁且愿意加入本研究的患者,排除标准是在儿科重症监护室住院的T1DM患者。对照组的纳入标准为4-18岁的健康儿童,并自愿加入本研究。排除标准包括持续感染、其他自身免疫性疾病、过敏史或恶性肿瘤的儿童。结果患者平均年龄12.48岁,T1DM发病年龄9.28岁。CTLA-4 1822 T等位基因在T1DM患者中占62%,对照组中占56% (p = 0.388, OR = 0.78, 95% CI = 0.44-1.37), CTLA-4 CT-60 G等位基因在T1DM患者中占52%,对照组中占58% (p = 0.393, OR = 1.27, 95% CI = 0.73-2.22)。对照组C/T基因型差异有统计学意义(p = 0.045, OR = 3.27, 95% CI = 1.00-10.62)。对照组A/G基因型较多(p = 0.765, OR = 1.20, 95% CI = 0.37 ~ 3.86)。爪哇人是我们研究中的主要族群。结论CTLA-4 CT-60 A/G多态性在T1DM组与对照组的频率基本相当。而CTLA-4 1822 C/T多态性在对照组中更为普遍;因此,该基因型可能对T1DM具有保护作用。
{"title":"CTLA-4 CT-60 A/G and CTLA-4 1822 C/T Gene Polymorphisms in Indonesians with Type 1 Diabetes Mellitus","authors":"N. Rochmah, M. Faizi, Suhasta Nova, R. A. Setyoningrum, S. Basuki, A. Endaryanto","doi":"10.2147/TACG.S359158","DOIUrl":"https://doi.org/10.2147/TACG.S359158","url":null,"abstract":"Introduction CTLA-4 gene polymorphism plays an important role in children with type 1 diabetes mellitus (T1DM). However, data on this subject vary among different races and ethnics. Purpose To analyze CTLA-4 CT-60 A/G and CTLA-4 1822 C/T gene polymorphism among children with T1DM compared to control. Patients and Methods The CTLA-4 CT-60 A/G and CTLA-4 1822 C/T gene polymorphism in children with T1DM using polymerase chain reaction-restriction fragment length polymorphism in 25 T1DM and 25 controls. The inclusion criteria were patients regularly controlled at the Pediatric Endocrine Outpatient Clinic of Dr. Soetomo Hospital, aged 4–18 years and willing to join this study and the exclusion criteria were T1DM patients hospitalized in the pediatric intensive care unit. In the control group, the inclusion criteria were healthy children, aged 4–18 years and willing to join this study. The exclusion criteria included children with ongoing infection, history of other autoimmune diseases, allergies, or malignancy. Results The mean age was 12.48 years old, and the mean of T1DM onset was 9.28 years old. The CTLA-4 1822 T allele observed in 62% T1DM and 56% in control (p = 0.388, OR = 0.78, 95% CI = 0.44–1.37) and CTLA-4 CT-60 G allele observed in 52% T1DM and 58% in control (p = 0.393, OR = 1.27, 95% CI = 0.73–2.22). The C/T genotypes was significantly higher in control group (p = 0.045, OR = 3.27, 95% CI = 1.00–10.62). The A/G genotypes was commonly found in control group (p = 0.765, OR = 1.20, 95% CI = 0.37–3.86). The Javanese was the dominant ethnic group in our study. Conclusion The frequency of CTLA-4 CT-60 A/G polymorphism almost equivalent in T1DM and control group. However, CTLA-4 1822 C/T polymorphism was more prevalent in the control group; thus, this genotype may have a protective effect against T1DM.","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"15 1","pages":"19 - 25"},"PeriodicalIF":3.1,"publicationDate":"2022-04-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42873602","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
CCR2 Genetic Polymorphism And Its Potential Effect On HIV Acquisition In A Population Of Children Living In The Northern Region Of Cameroon 喀麦隆北部地区儿童CCR2基因多态性及其对HIV感染的潜在影响
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2019-11-28 DOI: 10.2147/TACG.S202498
M. Ngoufack, C. Nkenfou, Barbara Atogho Tiedeu, L. Mouafo, B. Dambaya, E. Ndzi, C. Kouanfack, G. Nguefack-Tsague, W. Mbacham, A. Ndjolo
Background and objectives The association of chemokine receptor-2 (CCR2) polymorphism with HIV transmission or disease progression remains highly controversial. The role of CCR2-64I allele in HIV infection may differ from one population to another because of their genetic background. The objectives of this study were to characterize the CCR2 genetic polymorphism and to determine its potential effect in HIV acquisition in children living in the Northern Region of Cameroon. Materials and methods A cross-sectional study was carried out in five health facilities in the Northern region of Cameroon. DNA was extracted from the Buffy coat of each participant using the QIAamp®DNA mini kit. The DNA extract was then subjected to polymorphic analyses. CCR2 genotypes were analyzed by polymerase chain reaction (PCR) and restriction fragment length polymorphism (RFLP). The Chi-Squared test was used for the assessment of the Hardy-Weinberg equilibrium. Results A total of 134 children under 15 years comprised of 38 HIV-exposed infected (28.36%) and 96 HIV-exposed un-infected (71.64%) participants were recruited. Prevalences of 44.78% wild type homozygous, 48.52% heterozygous and 6.7% mutant homozygous alleles were found in the overall population. An allelic frequency of 29.69% for the mutant allele CCR2-64I was found in HIV-exposed un-infected individuals as compared to 34.21% in HIV-infected children (p=0.47). Conclusion The CCR2-64I allele is relatively common in the Northern Region of Cameroon, with a similar distribution among HIV-exposed un-infected and infected children. As this allele alone does not seem to confer protection against HIV-1 infection, further studies using genotype-combination of CCR2 polymorphism and other single nucleotide polymorphisms would be of great relevance in both HIV prevention and novel therapeutic strategies.
背景和目的趋化因子受体2(CCR2)多态性与HIV传播或疾病进展的关系仍然存在很大争议。CCR2-64I等位基因在HIV感染中的作用可能因其遗传背景而异。本研究的目的是表征CCR2基因多态性,并确定其在喀麦隆北部地区儿童艾滋病病毒感染中的潜在影响。材料和方法在喀麦隆北部地区的五个卫生机构进行了一项横断面研究。使用QIAamp®DNA迷你试剂盒从每位参与者的Buffy外套中提取DNA。然后对DNA提取物进行多态性分析。应用聚合酶链式反应(PCR)和限制性片段长度多态性(RFLP)分析CCR2基因型。卡方检验用于评估Hardy-Weinberg平衡。结果共招募了134名15岁以下儿童,其中38名感染者(28.36%)和96名未感染者(71.64%)。在整个人群中发现44.78%的野生型纯合子、48.52%的杂合子和6.7%的突变纯合子等位基因的患病率。突变等位基因CCR2-64I的等位基因频率在HIV暴露的未感染者中为29.69%,而在HIV感染的儿童中为34.21%(p=0.047)。由于该等位基因本身似乎不能提供对HIV-1感染的保护,因此使用CCR2多态性和其他单核苷酸多态性的基因型组合进行进一步研究将对HIV预防和新的治疗策略具有重要意义。
{"title":"CCR2 Genetic Polymorphism And Its Potential Effect On HIV Acquisition In A Population Of Children Living In The Northern Region Of Cameroon","authors":"M. Ngoufack, C. Nkenfou, Barbara Atogho Tiedeu, L. Mouafo, B. Dambaya, E. Ndzi, C. Kouanfack, G. Nguefack-Tsague, W. Mbacham, A. Ndjolo","doi":"10.2147/TACG.S202498","DOIUrl":"https://doi.org/10.2147/TACG.S202498","url":null,"abstract":"Background and objectives The association of chemokine receptor-2 (CCR2) polymorphism with HIV transmission or disease progression remains highly controversial. The role of CCR2-64I allele in HIV infection may differ from one population to another because of their genetic background. The objectives of this study were to characterize the CCR2 genetic polymorphism and to determine its potential effect in HIV acquisition in children living in the Northern Region of Cameroon. Materials and methods A cross-sectional study was carried out in five health facilities in the Northern region of Cameroon. DNA was extracted from the Buffy coat of each participant using the QIAamp®DNA mini kit. The DNA extract was then subjected to polymorphic analyses. CCR2 genotypes were analyzed by polymerase chain reaction (PCR) and restriction fragment length polymorphism (RFLP). The Chi-Squared test was used for the assessment of the Hardy-Weinberg equilibrium. Results A total of 134 children under 15 years comprised of 38 HIV-exposed infected (28.36%) and 96 HIV-exposed un-infected (71.64%) participants were recruited. Prevalences of 44.78% wild type homozygous, 48.52% heterozygous and 6.7% mutant homozygous alleles were found in the overall population. An allelic frequency of 29.69% for the mutant allele CCR2-64I was found in HIV-exposed un-infected individuals as compared to 34.21% in HIV-infected children (p=0.47). Conclusion The CCR2-64I allele is relatively common in the Northern Region of Cameroon, with a similar distribution among HIV-exposed un-infected and infected children. As this allele alone does not seem to confer protection against HIV-1 infection, further studies using genotype-combination of CCR2 polymorphism and other single nucleotide polymorphisms would be of great relevance in both HIV prevention and novel therapeutic strategies.","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"12 1","pages":"229 - 234"},"PeriodicalIF":3.1,"publicationDate":"2019-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2147/TACG.S202498","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48529744","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Candidate Gene Analysis Of Alopecia Areata In Jordanian Population Of Arab Descent: A Case–Control Study 约旦阿拉伯人后裔斑秃的候选基因分析:一项病例对照研究
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2019-11-21 DOI: 10.2147/TACG.S226664
L. Al-Eitan, Rawan O. Al Momani, Khalid K Al Momani, Ahmad M Al Warawrah, Hanan A. Aljamal, M. Alghamdi, A. Muhanna, Firas A. Al-qarqaz
Background Alopecia areata (AA) is a non-cicatricial patchy hair loss on the scalp, face or other parts of the body. AA was found to be responsive to immunosuppressive therapies, a finding that supports an autoimmune basis for the disease. Several genetic studies have shown the significance of immunological factors as key genetic components in AA. Objective In this study, we aimed to investigate the genetic association of 7 single-nucleotide polymorphisms (SNPs) within five candidate genes including TAP1, CXCL1, CXCL2, HSPA1B, and TNFα with AA susceptibility in the Jordanian Arab population. Methods A case–control genetic association study conducted in 152 patients and 150 healthy individuals was performed using the sequenom MassARRAY system (iPLEX GOLD) to genotype the selected SNPs. Results rs1800629 SNP of the TNFα gene was significantly associated with AA in the heterozygous and rare homozygous genotypes (P=0.022 and P=0.0079, respectively) with no linkage of the TAP1, CXCL1, CXCL2 and HSPA1B variants. Conclusion This is the first study of its kind among the Jordanian population providing evidence of genetic association of the TNFα with AA susceptibility. Further genetic studies on Arab descent including other variants are required to clarify and strengthen the association of these genes with susceptibility to develop AA.
斑秃(AA)是一种发生在头皮、面部或身体其他部位的非瘢痕性斑状脱发。发现AA对免疫抑制疗法有反应,这一发现支持了该疾病的自身免疫基础。一些遗传学研究表明,免疫因子是AA的关键遗传成分。目的研究约旦阿拉伯人群中5个候选基因(包括TAP1、CXCL1、CXCL2、HSPA1B和TNFα) 7个单核苷酸多态性与AA易感性的遗传关系。方法采用测序MassARRAY系统(iPLEX GOLD)对152例患者和150例健康人进行病例对照遗传关联研究,对所选snp进行基因分型。结果TNFα基因rs1800629 SNP与AA在杂合子和罕见纯合子基因型中存在显著相关性(P=0.022和P=0.0079),而与TAP1、CXCL1、CXCL2和HSPA1B基因型无连锁关系。结论:这是首次在约旦人群中进行的此类研究,为TNFα与AA易感性的遗传关联提供了证据。需要对阿拉伯后裔进行进一步的遗传研究,包括其他变异,以澄清和加强这些基因与AA易感性的关联。
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引用次数: 5
SLC22A1 And ATM Genes Polymorphisms Are Associated With The Risk Of Type 2 Diabetes Mellitus In Western Saudi Arabia: A Case-Control Study SLC22A1和ATM基因多态性与沙特阿拉伯西部2型糖尿病风险相关:一项病例对照研究
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2019-11-15 DOI: 10.2147/TACG.S229952
Rana M Altall, S. Qusti, Najlaa Filimban, A. Alhozali, N. A. Alotaibi, A. Dallol, A. Chaudhary, S. Bakhashab
Introduction Type 2 diabetes mellitus (T2DM) is a major global health problem that is progressively affected by genetic and environmental factors. The aim of this study is to determine the influence of solute carrier family 22 member 1 (SLC22A1) rs628031 and rs461473, and ataxia telangiectasia mutated (ATM) rs11212617 polymorphisms on the risk of T2DM in Saudi Arabia by considering many parameters associated with glycemic control of T2DM, such as body mass index (BMI), fasting blood glucose, glycated hemoglobin (HbA1c), and triglyceride. Methods In a case-control study, genomic DNA from controls and diabetic groups was isolated and genotyped for each single-nucleotide polymorphism. Results There were significant correlations between T2DM and both BMI and HbA1c. Significant associations between G/G and A/G genotypes of rs628031 and rs461473 variants of SLC22A1 and high levels of HbA1c were detected. Therefore, G was predicted to be the risk allele among the assessed SLC22A1 variants. A significant correlation was observed between A/A and A/C genotypes of the rs11212617 polymorphism of ATM and elevated HbA1c. Relative risk calculation confirmed A to be the risk allele in the T2DM population. Conclusion Our study showed the risk of the assessed SLC22A1 and ATM variants on glycemic control parameters in diabetic patients.
2型糖尿病(T2DM)是一种主要的全球性健康问题,它逐渐受到遗传和环境因素的影响。本研究的目的是通过考虑与T2DM血糖控制相关的许多参数,如体重指数(BMI)、空腹血糖、糖化血红蛋白(HbA1c)和甘油三酯,确定溶质载体家族22成员1 (SLC22A1) rs628031和rs461473以及失调性毛细血管扩张突变(ATM) rs11212617多态性对沙特阿拉伯T2DM风险的影响。方法采用病例对照研究方法,分别从对照组和糖尿病组中分离基因组DNA,并对每个单核苷酸多态性进行基因分型。结果T2DM与BMI、HbA1c均有显著相关性。SLC22A1 rs628031和rs461473变异的G/G和A/G基因型与高水平HbA1c之间存在显著相关性。因此,预测G是评估的SLC22A1变异中的风险等位基因。ATM rs11212617多态性的A/A和A/C基因型与HbA1c升高有显著相关性。相对风险计算证实A是T2DM人群的危险等位基因。结论我们的研究显示了SLC22A1和ATM变异对糖尿病患者血糖控制参数的风险。
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引用次数: 8
期刊
Application of Clinical Genetics
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