首页 > 最新文献

Application of Clinical Genetics最新文献

英文 中文
Prominent Mutation of Intron 22 Inversion in Sporadic Hemophilia: Is It Worth the Antenatal Screening? 散发性血友病内含子22倒置的显著突变:值得产前筛查吗?
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2022-05-01 DOI: 10.2147/TACG.S363132
W. Sasanakul, A. Chuansumrit, N. Sirachainan, P. Kadegasem
Background Adequate replacement for patients with hemophilia is costly, especially in countries with limited resources. Objective Factor VIII gene mutations among Thai patients with hemophilia A were analyzed for the most common mutation. The cost-effectiveness of finding one female without family history of hemophilia possessing the most common factor VIII mutation was compared with the cost of treating one patient with hemophilia. Methods In all, 109 unrelated patients with hemophilia A, defined as sporadic cases (n=58) and hereditary cases (n=51), were enrolled for genotypic analysis. Results Intron 22 inversion was prominently found in 34 sporadic (58.6%) and 27 hereditary (51.9%) cases. The screening for intron 22 inversion among females without family history of hemophilia at antenatal care has been optionally suggested. A female with a positive result will undergo further prenatal diagnosis of hemophilia in her male offspring. On the contrary, a female with a negative test result remains at risk to have a hemophiliac son caused by other factor VIII gene mutations not included in the screening but the risk is not as high as intron 22 inversion. Although the screening of factor VIII mutation among females without family history of hemophilia is against the current practice, it has been initiated due to the inadequate treatment provided to patients with hemophilia in countries with limited resources. The study calculated approximately one female with intron 22 inversion would exist among 17,064 females without family history of hemophilia. The cost of screening (194,870 USD) was much less than that of treating one patient with hemophilia from birth to 40 years of age by the current regimen (378,000 USD). Conclusion Implementing antenatal screening of intron 22 inversion among females without family history of hemophilia is optionally suggested, especially in economically less-developed countries with inadequate treatment service for patients with hemophilia.
背景对血友病患者进行充分的替换是昂贵的,尤其是在资源有限的国家。目的分析泰国A型血友病患者中最常见的因子VIII基因突变。将发现一名无血友病家族史且具有最常见因子VIII突变的女性的成本效益与治疗一名血友病患者的成本进行比较。方法对109例无关的A型血友病患者进行基因型分析,包括散发病例(n=58)和遗传病例(n=51)。结果34例散发性病例(58.6%)和27例遗传性病例(51.9%)出现内含子22倒置。在没有血友病家族史的女性中,有人建议在产前护理中筛查内含子22倒置。阳性结果的女性将在其男性后代中接受进一步的血友病产前诊断。相反,检测结果呈阴性的女性仍有可能因筛查中未包括的其他因子VIII基因突变而患上血友病,但风险没有内含子22倒置那么高。尽管在没有血友病家族史的女性中筛查因子VIII突变是不符合目前的做法的,但由于在资源有限的国家为血友病患者提供的治疗不足,这项工作已经开始。该研究计算出,在17064名没有血友病家族史的女性中,大约有一名内含子22倒置的女性。筛查费用(194870美元)远低于目前方案治疗一名从出生到40岁的血友病患者的费用(378000美元)。结论建议在没有血友病家族史的女性中进行内含子22倒置的产前筛查,特别是在经济欠发达、血友病患者治疗服务不足的国家。
{"title":"Prominent Mutation of Intron 22 Inversion in Sporadic Hemophilia: Is It Worth the Antenatal Screening?","authors":"W. Sasanakul, A. Chuansumrit, N. Sirachainan, P. Kadegasem","doi":"10.2147/TACG.S363132","DOIUrl":"https://doi.org/10.2147/TACG.S363132","url":null,"abstract":"Background Adequate replacement for patients with hemophilia is costly, especially in countries with limited resources. Objective Factor VIII gene mutations among Thai patients with hemophilia A were analyzed for the most common mutation. The cost-effectiveness of finding one female without family history of hemophilia possessing the most common factor VIII mutation was compared with the cost of treating one patient with hemophilia. Methods In all, 109 unrelated patients with hemophilia A, defined as sporadic cases (n=58) and hereditary cases (n=51), were enrolled for genotypic analysis. Results Intron 22 inversion was prominently found in 34 sporadic (58.6%) and 27 hereditary (51.9%) cases. The screening for intron 22 inversion among females without family history of hemophilia at antenatal care has been optionally suggested. A female with a positive result will undergo further prenatal diagnosis of hemophilia in her male offspring. On the contrary, a female with a negative test result remains at risk to have a hemophiliac son caused by other factor VIII gene mutations not included in the screening but the risk is not as high as intron 22 inversion. Although the screening of factor VIII mutation among females without family history of hemophilia is against the current practice, it has been initiated due to the inadequate treatment provided to patients with hemophilia in countries with limited resources. The study calculated approximately one female with intron 22 inversion would exist among 17,064 females without family history of hemophilia. The cost of screening (194,870 USD) was much less than that of treating one patient with hemophilia from birth to 40 years of age by the current regimen (378,000 USD). Conclusion Implementing antenatal screening of intron 22 inversion among females without family history of hemophilia is optionally suggested, especially in economically less-developed countries with inadequate treatment service for patients with hemophilia.","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"15 1","pages":"49 - 54"},"PeriodicalIF":3.1,"publicationDate":"2022-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41392044","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Molecular Genetic Screening of Neonatal Intensive Care Units: Hyperbilirubinemia as an Example 新生儿重症监护病房的分子遗传筛查:以高胆红素血症为例
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2022-05-01 DOI: 10.2147/TACG.S362148
Yuqi Yang, Yu Wang, Lingna Zhou, W. Long, Binsheng Yu, Huaiyan Wang
Objective To explore the clinical value of newborn genomic screening (nGS) for neonatal intensive care units (NICU) infants (taking neonatal hyperbilirubinemia as an example). Methods Dried blood spots (DBSs) were collected after 72 hours of birth. The tandem mass spectrometry (TMS) screening and Angel Care genomic screening (GS, based on Targeted next-generation sequencing) were performed at the same time. Results Ninety-six hyperbilirubinemia newborns were enrolled in this study and none was identified with inborn errors of metabolism (IEM) by TMS, while 6 infants (6.25%, 6/96) were suspected to have a genetic disorder by Angel Care, including 2 cases of glucose-6-phosphate dehydrogenase deficiency (G6PD), and 1 case of maple syrup urine disease type 1B (MSUD1B), autosomal recessive deafness 1A (DFNB1A), Leber hereditary optic neuropathy (LHON), thyroid dyshormonogenesis 6 (TDH6) each. In addition, 44 infants (45.8%) were detected having at least one variant which conferred a carrier status for a recessive childhood-onset disorder. A total of 33 out of 60 variants (55.0%) reported for carrier status were pathogenic (P), 24 (40.0%) were likely pathogenic (LP), and 3 variants were variant of uncertain significance (VUS). Top six common genes of carrier status were GJB2, DUOX2, PRODH, ATP7B, SLC12A3, SLC26A4. Two newborns showed abnormalities in elementary screening of TMS, but were confirmed as false positive after recall. Their results of Angel Care did not found abnormality. Conclusion Using neonatal hyperbilirubinemia as an example, genome sequencing screening can find more evidence of genetic variation in NICU newborns, and “Angel Care” is an effective method.
目的以新生儿高胆红素血症为例,探讨新生儿基因组筛查(nGS)对新生儿重症监护室(NICU)婴儿的临床应用价值。方法出生72小时后采集干血点。同时进行串联质谱(TMS)筛查和Angel Care基因组筛查(GS,基于靶向下一代测序)。结果96例高胆红素血症新生儿被纳入本研究,经颅磁刺激(TMS)未发现先天性代谢异常(IEM),而Angel Care怀疑6例婴儿(6.25%,6/96)患有遗传性疾病,其中2例为葡萄糖-6-磷酸脱氢酶缺乏症(G6PD),1例为1B型枫糖浆尿病(MSUD1B),常染色体隐性遗传性耳聋1A(DFNB1A)、Leber遗传性视神经病变(LHON)、甲状腺激素异常发生6(TDH6)。此外,44名婴儿(45.8%)被检测出至少有一种变异,该变异赋予隐性儿童发病障碍的携带者地位。在报告的携带者状态的60个变体中,共有33个(55.0%)是致病性的(P),24个(40.0%)可能是致病性(LP),3个变体是不确定显著性的变体(VUS)。携带者状态的前六个常见基因是GJB2、DUOX2、PRODH、ATP7B、SLC12A3、SLC26A4。两名新生儿在TMS的初步筛查中表现出异常,但在召回后被确认为假阳性。他们的Angel Care结果没有发现异常。结论以新生儿高胆红素血症为例,基因组测序筛查可以发现新生儿重症监护室新生儿遗传变异的更多证据,“天使护理”是一种有效的方法。
{"title":"Molecular Genetic Screening of Neonatal Intensive Care Units: Hyperbilirubinemia as an Example","authors":"Yuqi Yang, Yu Wang, Lingna Zhou, W. Long, Binsheng Yu, Huaiyan Wang","doi":"10.2147/TACG.S362148","DOIUrl":"https://doi.org/10.2147/TACG.S362148","url":null,"abstract":"Objective To explore the clinical value of newborn genomic screening (nGS) for neonatal intensive care units (NICU) infants (taking neonatal hyperbilirubinemia as an example). Methods Dried blood spots (DBSs) were collected after 72 hours of birth. The tandem mass spectrometry (TMS) screening and Angel Care genomic screening (GS, based on Targeted next-generation sequencing) were performed at the same time. Results Ninety-six hyperbilirubinemia newborns were enrolled in this study and none was identified with inborn errors of metabolism (IEM) by TMS, while 6 infants (6.25%, 6/96) were suspected to have a genetic disorder by Angel Care, including 2 cases of glucose-6-phosphate dehydrogenase deficiency (G6PD), and 1 case of maple syrup urine disease type 1B (MSUD1B), autosomal recessive deafness 1A (DFNB1A), Leber hereditary optic neuropathy (LHON), thyroid dyshormonogenesis 6 (TDH6) each. In addition, 44 infants (45.8%) were detected having at least one variant which conferred a carrier status for a recessive childhood-onset disorder. A total of 33 out of 60 variants (55.0%) reported for carrier status were pathogenic (P), 24 (40.0%) were likely pathogenic (LP), and 3 variants were variant of uncertain significance (VUS). Top six common genes of carrier status were GJB2, DUOX2, PRODH, ATP7B, SLC12A3, SLC26A4. Two newborns showed abnormalities in elementary screening of TMS, but were confirmed as false positive after recall. Their results of Angel Care did not found abnormality. Conclusion Using neonatal hyperbilirubinemia as an example, genome sequencing screening can find more evidence of genetic variation in NICU newborns, and “Angel Care” is an effective method.","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"15 1","pages":"39 - 48"},"PeriodicalIF":3.1,"publicationDate":"2022-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44952510","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
CTLA-4 CT-60 A/G and CTLA-4 1822 C/T Gene Polymorphisms in Indonesians with Type 1 Diabetes Mellitus 印尼1型糖尿病患者CTLA-4 CT-60 A/G和CTLA-4 1822 C/T基因多态性
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2022-04-29 DOI: 10.2147/TACG.S359158
N. Rochmah, M. Faizi, Suhasta Nova, R. A. Setyoningrum, S. Basuki, A. Endaryanto
Introduction CTLA-4 gene polymorphism plays an important role in children with type 1 diabetes mellitus (T1DM). However, data on this subject vary among different races and ethnics. Purpose To analyze CTLA-4 CT-60 A/G and CTLA-4 1822 C/T gene polymorphism among children with T1DM compared to control. Patients and Methods The CTLA-4 CT-60 A/G and CTLA-4 1822 C/T gene polymorphism in children with T1DM using polymerase chain reaction-restriction fragment length polymorphism in 25 T1DM and 25 controls. The inclusion criteria were patients regularly controlled at the Pediatric Endocrine Outpatient Clinic of Dr. Soetomo Hospital, aged 4–18 years and willing to join this study and the exclusion criteria were T1DM patients hospitalized in the pediatric intensive care unit. In the control group, the inclusion criteria were healthy children, aged 4–18 years and willing to join this study. The exclusion criteria included children with ongoing infection, history of other autoimmune diseases, allergies, or malignancy. Results The mean age was 12.48 years old, and the mean of T1DM onset was 9.28 years old. The CTLA-4 1822 T allele observed in 62% T1DM and 56% in control (p = 0.388, OR = 0.78, 95% CI = 0.44–1.37) and CTLA-4 CT-60 G allele observed in 52% T1DM and 58% in control (p = 0.393, OR = 1.27, 95% CI = 0.73–2.22). The C/T genotypes was significantly higher in control group (p = 0.045, OR = 3.27, 95% CI = 1.00–10.62). The A/G genotypes was commonly found in control group (p = 0.765, OR = 1.20, 95% CI = 0.37–3.86). The Javanese was the dominant ethnic group in our study. Conclusion The frequency of CTLA-4 CT-60 A/G polymorphism almost equivalent in T1DM and control group. However, CTLA-4 1822 C/T polymorphism was more prevalent in the control group; thus, this genotype may have a protective effect against T1DM.
CTLA-4基因多态性在儿童1型糖尿病(T1DM)中起重要作用。然而,关于这一主题的数据在不同的种族和民族之间有所不同。目的分析T1DM患儿CTLA-4 CT-60 A/G和CTLA-4 1822 C/T基因与对照组的多态性。患者与方法采用聚合酶链反应-限制性片段长度多态性对25例T1DM患儿和25例对照组的CTLA-4 CT-60 A/G和CTLA-4 1822 C/T基因多态性进行分析。纳入标准是在Dr. Soetomo医院儿科内分泌门诊定期对照、年龄4-18岁且愿意加入本研究的患者,排除标准是在儿科重症监护室住院的T1DM患者。对照组的纳入标准为4-18岁的健康儿童,并自愿加入本研究。排除标准包括持续感染、其他自身免疫性疾病、过敏史或恶性肿瘤的儿童。结果患者平均年龄12.48岁,T1DM发病年龄9.28岁。CTLA-4 1822 T等位基因在T1DM患者中占62%,对照组中占56% (p = 0.388, OR = 0.78, 95% CI = 0.44-1.37), CTLA-4 CT-60 G等位基因在T1DM患者中占52%,对照组中占58% (p = 0.393, OR = 1.27, 95% CI = 0.73-2.22)。对照组C/T基因型差异有统计学意义(p = 0.045, OR = 3.27, 95% CI = 1.00-10.62)。对照组A/G基因型较多(p = 0.765, OR = 1.20, 95% CI = 0.37 ~ 3.86)。爪哇人是我们研究中的主要族群。结论CTLA-4 CT-60 A/G多态性在T1DM组与对照组的频率基本相当。而CTLA-4 1822 C/T多态性在对照组中更为普遍;因此,该基因型可能对T1DM具有保护作用。
{"title":"CTLA-4 CT-60 A/G and CTLA-4 1822 C/T Gene Polymorphisms in Indonesians with Type 1 Diabetes Mellitus","authors":"N. Rochmah, M. Faizi, Suhasta Nova, R. A. Setyoningrum, S. Basuki, A. Endaryanto","doi":"10.2147/TACG.S359158","DOIUrl":"https://doi.org/10.2147/TACG.S359158","url":null,"abstract":"Introduction CTLA-4 gene polymorphism plays an important role in children with type 1 diabetes mellitus (T1DM). However, data on this subject vary among different races and ethnics. Purpose To analyze CTLA-4 CT-60 A/G and CTLA-4 1822 C/T gene polymorphism among children with T1DM compared to control. Patients and Methods The CTLA-4 CT-60 A/G and CTLA-4 1822 C/T gene polymorphism in children with T1DM using polymerase chain reaction-restriction fragment length polymorphism in 25 T1DM and 25 controls. The inclusion criteria were patients regularly controlled at the Pediatric Endocrine Outpatient Clinic of Dr. Soetomo Hospital, aged 4–18 years and willing to join this study and the exclusion criteria were T1DM patients hospitalized in the pediatric intensive care unit. In the control group, the inclusion criteria were healthy children, aged 4–18 years and willing to join this study. The exclusion criteria included children with ongoing infection, history of other autoimmune diseases, allergies, or malignancy. Results The mean age was 12.48 years old, and the mean of T1DM onset was 9.28 years old. The CTLA-4 1822 T allele observed in 62% T1DM and 56% in control (p = 0.388, OR = 0.78, 95% CI = 0.44–1.37) and CTLA-4 CT-60 G allele observed in 52% T1DM and 58% in control (p = 0.393, OR = 1.27, 95% CI = 0.73–2.22). The C/T genotypes was significantly higher in control group (p = 0.045, OR = 3.27, 95% CI = 1.00–10.62). The A/G genotypes was commonly found in control group (p = 0.765, OR = 1.20, 95% CI = 0.37–3.86). The Javanese was the dominant ethnic group in our study. Conclusion The frequency of CTLA-4 CT-60 A/G polymorphism almost equivalent in T1DM and control group. However, CTLA-4 1822 C/T polymorphism was more prevalent in the control group; thus, this genotype may have a protective effect against T1DM.","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"15 1","pages":"19 - 25"},"PeriodicalIF":3.1,"publicationDate":"2022-04-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42873602","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
CCR2 Genetic Polymorphism And Its Potential Effect On HIV Acquisition In A Population Of Children Living In The Northern Region Of Cameroon 喀麦隆北部地区儿童CCR2基因多态性及其对HIV感染的潜在影响
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2019-11-28 DOI: 10.2147/TACG.S202498
M. Ngoufack, C. Nkenfou, Barbara Atogho Tiedeu, L. Mouafo, B. Dambaya, E. Ndzi, C. Kouanfack, G. Nguefack-Tsague, W. Mbacham, A. Ndjolo
Background and objectives The association of chemokine receptor-2 (CCR2) polymorphism with HIV transmission or disease progression remains highly controversial. The role of CCR2-64I allele in HIV infection may differ from one population to another because of their genetic background. The objectives of this study were to characterize the CCR2 genetic polymorphism and to determine its potential effect in HIV acquisition in children living in the Northern Region of Cameroon. Materials and methods A cross-sectional study was carried out in five health facilities in the Northern region of Cameroon. DNA was extracted from the Buffy coat of each participant using the QIAamp®DNA mini kit. The DNA extract was then subjected to polymorphic analyses. CCR2 genotypes were analyzed by polymerase chain reaction (PCR) and restriction fragment length polymorphism (RFLP). The Chi-Squared test was used for the assessment of the Hardy-Weinberg equilibrium. Results A total of 134 children under 15 years comprised of 38 HIV-exposed infected (28.36%) and 96 HIV-exposed un-infected (71.64%) participants were recruited. Prevalences of 44.78% wild type homozygous, 48.52% heterozygous and 6.7% mutant homozygous alleles were found in the overall population. An allelic frequency of 29.69% for the mutant allele CCR2-64I was found in HIV-exposed un-infected individuals as compared to 34.21% in HIV-infected children (p=0.47). Conclusion The CCR2-64I allele is relatively common in the Northern Region of Cameroon, with a similar distribution among HIV-exposed un-infected and infected children. As this allele alone does not seem to confer protection against HIV-1 infection, further studies using genotype-combination of CCR2 polymorphism and other single nucleotide polymorphisms would be of great relevance in both HIV prevention and novel therapeutic strategies.
背景和目的趋化因子受体2(CCR2)多态性与HIV传播或疾病进展的关系仍然存在很大争议。CCR2-64I等位基因在HIV感染中的作用可能因其遗传背景而异。本研究的目的是表征CCR2基因多态性,并确定其在喀麦隆北部地区儿童艾滋病病毒感染中的潜在影响。材料和方法在喀麦隆北部地区的五个卫生机构进行了一项横断面研究。使用QIAamp®DNA迷你试剂盒从每位参与者的Buffy外套中提取DNA。然后对DNA提取物进行多态性分析。应用聚合酶链式反应(PCR)和限制性片段长度多态性(RFLP)分析CCR2基因型。卡方检验用于评估Hardy-Weinberg平衡。结果共招募了134名15岁以下儿童,其中38名感染者(28.36%)和96名未感染者(71.64%)。在整个人群中发现44.78%的野生型纯合子、48.52%的杂合子和6.7%的突变纯合子等位基因的患病率。突变等位基因CCR2-64I的等位基因频率在HIV暴露的未感染者中为29.69%,而在HIV感染的儿童中为34.21%(p=0.047)。由于该等位基因本身似乎不能提供对HIV-1感染的保护,因此使用CCR2多态性和其他单核苷酸多态性的基因型组合进行进一步研究将对HIV预防和新的治疗策略具有重要意义。
{"title":"CCR2 Genetic Polymorphism And Its Potential Effect On HIV Acquisition In A Population Of Children Living In The Northern Region Of Cameroon","authors":"M. Ngoufack, C. Nkenfou, Barbara Atogho Tiedeu, L. Mouafo, B. Dambaya, E. Ndzi, C. Kouanfack, G. Nguefack-Tsague, W. Mbacham, A. Ndjolo","doi":"10.2147/TACG.S202498","DOIUrl":"https://doi.org/10.2147/TACG.S202498","url":null,"abstract":"Background and objectives The association of chemokine receptor-2 (CCR2) polymorphism with HIV transmission or disease progression remains highly controversial. The role of CCR2-64I allele in HIV infection may differ from one population to another because of their genetic background. The objectives of this study were to characterize the CCR2 genetic polymorphism and to determine its potential effect in HIV acquisition in children living in the Northern Region of Cameroon. Materials and methods A cross-sectional study was carried out in five health facilities in the Northern region of Cameroon. DNA was extracted from the Buffy coat of each participant using the QIAamp®DNA mini kit. The DNA extract was then subjected to polymorphic analyses. CCR2 genotypes were analyzed by polymerase chain reaction (PCR) and restriction fragment length polymorphism (RFLP). The Chi-Squared test was used for the assessment of the Hardy-Weinberg equilibrium. Results A total of 134 children under 15 years comprised of 38 HIV-exposed infected (28.36%) and 96 HIV-exposed un-infected (71.64%) participants were recruited. Prevalences of 44.78% wild type homozygous, 48.52% heterozygous and 6.7% mutant homozygous alleles were found in the overall population. An allelic frequency of 29.69% for the mutant allele CCR2-64I was found in HIV-exposed un-infected individuals as compared to 34.21% in HIV-infected children (p=0.47). Conclusion The CCR2-64I allele is relatively common in the Northern Region of Cameroon, with a similar distribution among HIV-exposed un-infected and infected children. As this allele alone does not seem to confer protection against HIV-1 infection, further studies using genotype-combination of CCR2 polymorphism and other single nucleotide polymorphisms would be of great relevance in both HIV prevention and novel therapeutic strategies.","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"12 1","pages":"229 - 234"},"PeriodicalIF":3.1,"publicationDate":"2019-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2147/TACG.S202498","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48529744","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Candidate Gene Analysis Of Alopecia Areata In Jordanian Population Of Arab Descent: A Case–Control Study 约旦阿拉伯人后裔斑秃的候选基因分析:一项病例对照研究
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2019-11-21 DOI: 10.2147/TACG.S226664
L. Al-Eitan, Rawan O. Al Momani, Khalid K Al Momani, Ahmad M Al Warawrah, Hanan A. Aljamal, M. Alghamdi, A. Muhanna, Firas A. Al-qarqaz
Background Alopecia areata (AA) is a non-cicatricial patchy hair loss on the scalp, face or other parts of the body. AA was found to be responsive to immunosuppressive therapies, a finding that supports an autoimmune basis for the disease. Several genetic studies have shown the significance of immunological factors as key genetic components in AA. Objective In this study, we aimed to investigate the genetic association of 7 single-nucleotide polymorphisms (SNPs) within five candidate genes including TAP1, CXCL1, CXCL2, HSPA1B, and TNFα with AA susceptibility in the Jordanian Arab population. Methods A case–control genetic association study conducted in 152 patients and 150 healthy individuals was performed using the sequenom MassARRAY system (iPLEX GOLD) to genotype the selected SNPs. Results rs1800629 SNP of the TNFα gene was significantly associated with AA in the heterozygous and rare homozygous genotypes (P=0.022 and P=0.0079, respectively) with no linkage of the TAP1, CXCL1, CXCL2 and HSPA1B variants. Conclusion This is the first study of its kind among the Jordanian population providing evidence of genetic association of the TNFα with AA susceptibility. Further genetic studies on Arab descent including other variants are required to clarify and strengthen the association of these genes with susceptibility to develop AA.
斑秃(AA)是一种发生在头皮、面部或身体其他部位的非瘢痕性斑状脱发。发现AA对免疫抑制疗法有反应,这一发现支持了该疾病的自身免疫基础。一些遗传学研究表明,免疫因子是AA的关键遗传成分。目的研究约旦阿拉伯人群中5个候选基因(包括TAP1、CXCL1、CXCL2、HSPA1B和TNFα) 7个单核苷酸多态性与AA易感性的遗传关系。方法采用测序MassARRAY系统(iPLEX GOLD)对152例患者和150例健康人进行病例对照遗传关联研究,对所选snp进行基因分型。结果TNFα基因rs1800629 SNP与AA在杂合子和罕见纯合子基因型中存在显著相关性(P=0.022和P=0.0079),而与TAP1、CXCL1、CXCL2和HSPA1B基因型无连锁关系。结论:这是首次在约旦人群中进行的此类研究,为TNFα与AA易感性的遗传关联提供了证据。需要对阿拉伯后裔进行进一步的遗传研究,包括其他变异,以澄清和加强这些基因与AA易感性的关联。
{"title":"Candidate Gene Analysis Of Alopecia Areata In Jordanian Population Of Arab Descent: A Case–Control Study","authors":"L. Al-Eitan, Rawan O. Al Momani, Khalid K Al Momani, Ahmad M Al Warawrah, Hanan A. Aljamal, M. Alghamdi, A. Muhanna, Firas A. Al-qarqaz","doi":"10.2147/TACG.S226664","DOIUrl":"https://doi.org/10.2147/TACG.S226664","url":null,"abstract":"Background Alopecia areata (AA) is a non-cicatricial patchy hair loss on the scalp, face or other parts of the body. AA was found to be responsive to immunosuppressive therapies, a finding that supports an autoimmune basis for the disease. Several genetic studies have shown the significance of immunological factors as key genetic components in AA. Objective In this study, we aimed to investigate the genetic association of 7 single-nucleotide polymorphisms (SNPs) within five candidate genes including TAP1, CXCL1, CXCL2, HSPA1B, and TNFα with AA susceptibility in the Jordanian Arab population. Methods A case–control genetic association study conducted in 152 patients and 150 healthy individuals was performed using the sequenom MassARRAY system (iPLEX GOLD) to genotype the selected SNPs. Results rs1800629 SNP of the TNFα gene was significantly associated with AA in the heterozygous and rare homozygous genotypes (P=0.022 and P=0.0079, respectively) with no linkage of the TAP1, CXCL1, CXCL2 and HSPA1B variants. Conclusion This is the first study of its kind among the Jordanian population providing evidence of genetic association of the TNFα with AA susceptibility. Further genetic studies on Arab descent including other variants are required to clarify and strengthen the association of these genes with susceptibility to develop AA.","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"12 1","pages":"221 - 228"},"PeriodicalIF":3.1,"publicationDate":"2019-11-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2147/TACG.S226664","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45577408","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
SLC22A1 And ATM Genes Polymorphisms Are Associated With The Risk Of Type 2 Diabetes Mellitus In Western Saudi Arabia: A Case-Control Study SLC22A1和ATM基因多态性与沙特阿拉伯西部2型糖尿病风险相关:一项病例对照研究
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2019-11-15 DOI: 10.2147/TACG.S229952
Rana M Altall, S. Qusti, Najlaa Filimban, A. Alhozali, N. A. Alotaibi, A. Dallol, A. Chaudhary, S. Bakhashab
Introduction Type 2 diabetes mellitus (T2DM) is a major global health problem that is progressively affected by genetic and environmental factors. The aim of this study is to determine the influence of solute carrier family 22 member 1 (SLC22A1) rs628031 and rs461473, and ataxia telangiectasia mutated (ATM) rs11212617 polymorphisms on the risk of T2DM in Saudi Arabia by considering many parameters associated with glycemic control of T2DM, such as body mass index (BMI), fasting blood glucose, glycated hemoglobin (HbA1c), and triglyceride. Methods In a case-control study, genomic DNA from controls and diabetic groups was isolated and genotyped for each single-nucleotide polymorphism. Results There were significant correlations between T2DM and both BMI and HbA1c. Significant associations between G/G and A/G genotypes of rs628031 and rs461473 variants of SLC22A1 and high levels of HbA1c were detected. Therefore, G was predicted to be the risk allele among the assessed SLC22A1 variants. A significant correlation was observed between A/A and A/C genotypes of the rs11212617 polymorphism of ATM and elevated HbA1c. Relative risk calculation confirmed A to be the risk allele in the T2DM population. Conclusion Our study showed the risk of the assessed SLC22A1 and ATM variants on glycemic control parameters in diabetic patients.
2型糖尿病(T2DM)是一种主要的全球性健康问题,它逐渐受到遗传和环境因素的影响。本研究的目的是通过考虑与T2DM血糖控制相关的许多参数,如体重指数(BMI)、空腹血糖、糖化血红蛋白(HbA1c)和甘油三酯,确定溶质载体家族22成员1 (SLC22A1) rs628031和rs461473以及失调性毛细血管扩张突变(ATM) rs11212617多态性对沙特阿拉伯T2DM风险的影响。方法采用病例对照研究方法,分别从对照组和糖尿病组中分离基因组DNA,并对每个单核苷酸多态性进行基因分型。结果T2DM与BMI、HbA1c均有显著相关性。SLC22A1 rs628031和rs461473变异的G/G和A/G基因型与高水平HbA1c之间存在显著相关性。因此,预测G是评估的SLC22A1变异中的风险等位基因。ATM rs11212617多态性的A/A和A/C基因型与HbA1c升高有显著相关性。相对风险计算证实A是T2DM人群的危险等位基因。结论我们的研究显示了SLC22A1和ATM变异对糖尿病患者血糖控制参数的风险。
{"title":"SLC22A1 And ATM Genes Polymorphisms Are Associated With The Risk Of Type 2 Diabetes Mellitus In Western Saudi Arabia: A Case-Control Study","authors":"Rana M Altall, S. Qusti, Najlaa Filimban, A. Alhozali, N. A. Alotaibi, A. Dallol, A. Chaudhary, S. Bakhashab","doi":"10.2147/TACG.S229952","DOIUrl":"https://doi.org/10.2147/TACG.S229952","url":null,"abstract":"Introduction Type 2 diabetes mellitus (T2DM) is a major global health problem that is progressively affected by genetic and environmental factors. The aim of this study is to determine the influence of solute carrier family 22 member 1 (SLC22A1) rs628031 and rs461473, and ataxia telangiectasia mutated (ATM) rs11212617 polymorphisms on the risk of T2DM in Saudi Arabia by considering many parameters associated with glycemic control of T2DM, such as body mass index (BMI), fasting blood glucose, glycated hemoglobin (HbA1c), and triglyceride. Methods In a case-control study, genomic DNA from controls and diabetic groups was isolated and genotyped for each single-nucleotide polymorphism. Results There were significant correlations between T2DM and both BMI and HbA1c. Significant associations between G/G and A/G genotypes of rs628031 and rs461473 variants of SLC22A1 and high levels of HbA1c were detected. Therefore, G was predicted to be the risk allele among the assessed SLC22A1 variants. A significant correlation was observed between A/A and A/C genotypes of the rs11212617 polymorphism of ATM and elevated HbA1c. Relative risk calculation confirmed A to be the risk allele in the T2DM population. Conclusion Our study showed the risk of the assessed SLC22A1 and ATM variants on glycemic control parameters in diabetic patients.","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"12 1","pages":"213 - 219"},"PeriodicalIF":3.1,"publicationDate":"2019-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2147/TACG.S229952","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43610477","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 8
TRIM5α 136Q, CCR5 Promoter 59029G And CCR264I Alleles Impact The Progression Of HIV In Children And Adolescents. TRIM5α 136Q, CCR5启动子59029G和CCR264I等位基因影响儿童和青少年HIV的进展
IF 2.6 Q2 GENETICS & HEREDITY Pub Date : 2019-11-07 eCollection Date: 2019-01-01 DOI: 10.2147/TACG.S205335
Béatrice Dambaya, Céline Nguefeu Nkenfou, Linda Mekue, Georges Této, Nicole Ngoufack, Georgia Ambada, Njiokou Flobert, Vittorio Colizzi, Ndjolo Alexis

Background: Children show various degrees of vulnerability regarding HIV infection and disease progression. This disparity presents challenges for the follow-up of infected children. Here we investigated reasons behind this variability focusing on some host-related HIV genes.

Methods: We screened 570 Cameroonian children and adolescents, aged 1 to 19 years old. Among them, 137 were followed over 4 years, from 2010 to 2015. Upon signing a proxy consent, children and adolescents were classified according to their age, CD4 count, viral load and clinical symptoms as long-term non-progressors (LTNP), slow progressors (SP) and rapid progressors (RP). Their blood was collected every 6 months and used for biological and host genetic polymorphism analyses. Five genes were genotyped: Trim5α (R136Q), CCR5 promoter 59029G, CCR2-64I, SDF 3'A and CCR5-Δ32. Exposed non-infected (HEU) and unexposed HIV negative children (HNEU) were recruited as control groups.

Results: Among the 5 genes studied, the protective allele of Trim5α (R136Q) was present in all LTNP and in 72.34% and 2.56% of SP and RP, respectively (p<0.0001). The CCR5 promoter 59029G/G was also more present in LTNP and SP than in RP (p=0.02; p=0.04). The protective CCR2-64I homozygous genotype was almost absent in all groups, only the heterozygous genotype was present with a significant difference between RP vs SP (p=0.0001), and SP vs LTNP (p=0.0002). The CCR2-∆32 was completely absent either as homozygous or heterozygous genotype. It was a monomorphic allele. SDF 3'A was almost present as homozygous wild-type genotype in our study population and was associated neither to disease acquisition nor to disease progression.

Conclusion: Among the 5 genes described in the study, Trim 5α (R136Q), CCR5 promoter 59029G and CCR2V64I alleles were associated to the progression of HIV infection in children and adolescents.

背景儿童在艾滋病毒感染和疾病进展方面表现出不同程度的脆弱性。这种差异对受感染儿童的后续行动提出了挑战。在这里,我们研究了这种变异性背后的原因,重点是一些与宿主相关的HIV基因。方法我们对570名1至19岁的喀麦隆儿童和青少年进行了筛查。其中,137人在2010年至2015年的4年时间里进行了随访。签署代理同意书后,儿童和青少年根据年龄、CD4计数、病毒载量和临床症状分为长期非进展型(LTNP)、缓慢进展型(SP)和快速进展型(RP)。每6个月采集一次他们的血液,用于生物和宿主基因多态性分析。对5个基因进行了基因分型:Trim5α(R136Q)、CCR5启动子59029G、CCR2-64I、SDF 3 A和CCR5-Δ32。暴露的未感染(HEU)和未暴露的HIV阴性儿童(HNEU)被招募为对照组。结果在所研究的5个基因中,保护性等位基因Trim5α(R136Q)在所有LTNP中均存在,在SP和RP中分别存在72.34%和2.56%(p<0.0001)。CCR5启动子59029G/G在LTNP和SP中的存在也高于RP(p=0.02;p=0.04),只有杂合基因型存在,RP与SP(p=0.0001)和SP与LTNP(p=0.0002)之间存在显著差异。CCR2-∆32完全不存在,无论是纯合型还是杂合型。这是一个单态等位基因。SDF 3âA在我们的研究人群中几乎以纯合野生型基因型的形式存在,与疾病获得和疾病进展无关。结论在研究中描述的5个基因中,Trim 5α(R136Q)、CCR5启动子59029G和CCR2V64I等位基因与儿童和青少年HIV感染的进展有关。
{"title":"TRIM5α 136Q, CCR5 Promoter 59029G And CCR264I Alleles Impact The Progression Of HIV In Children And Adolescents.","authors":"Béatrice Dambaya, Céline Nguefeu Nkenfou, Linda Mekue, Georges Této, Nicole Ngoufack, Georgia Ambada, Njiokou Flobert, Vittorio Colizzi, Ndjolo Alexis","doi":"10.2147/TACG.S205335","DOIUrl":"10.2147/TACG.S205335","url":null,"abstract":"<p><strong>Background: </strong>Children show various degrees of vulnerability regarding HIV infection and disease progression. This disparity presents challenges for the follow-up of infected children. Here we investigated reasons behind this variability focusing on some host-related HIV genes.</p><p><strong>Methods: </strong>We screened 570 Cameroonian children and adolescents, aged 1 to 19 years old. Among them, 137 were followed over 4 years, from 2010 to 2015. Upon signing a proxy consent, children and adolescents were classified according to their age, CD4 count, viral load and clinical symptoms as long-term non-progressors (LTNP), slow progressors (SP) and rapid progressors (RP). Their blood was collected every 6 months and used for biological and host genetic polymorphism analyses. Five genes were genotyped: <i>Trim5α (R136Q), CCR5</i> promoter <i>59029G, CCR2-64I, SDF 3'A</i> and <i>CCR5-Δ32</i>. Exposed non-infected (HEU) and unexposed HIV negative children (HNEU) were recruited as control groups.</p><p><strong>Results: </strong>Among the 5 genes studied, the protective allele of Trim5α (R136Q) was present in all LTNP and in 72.34% and 2.56% of SP and RP, respectively (p<0.0001). The CCR5 promoter 59029G/G was also more present in LTNP and SP than in RP (p=0.02; p=0.04). The protective CCR2-64I homozygous genotype was almost absent in all groups, only the heterozygous genotype was present with a significant difference between RP vs SP (p=0.0001), and SP vs LTNP (p=0.0002). The CCR2-∆32 was completely absent either as homozygous or heterozygous genotype. It was a monomorphic allele. SDF 3'A was almost present as homozygous wild-type genotype in our study population and was associated neither to disease acquisition nor to disease progression.</p><p><strong>Conclusion: </strong>Among the 5 genes described in the study, Trim 5α (R136Q), CCR5 promoter 59029G and CCR2V64I alleles were associated to the progression of HIV infection in children and adolescents.</p>","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"12 1","pages":"203-211"},"PeriodicalIF":2.6,"publicationDate":"2019-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6844200/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42679472","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Update On The Clinical Perspectives And Care Of The Child With 47,XXY (Klinefelter Syndrome). 47,XXY(克氏综合征)患儿的临床前景和护理更新。
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2019-10-23 eCollection Date: 2019-01-01 DOI: 10.2147/TACG.S180450
Carole A Samango-Sprouse, Debra R Counts, Selena L Tran, Patricia C Lasutschinkow, Grace F Porter, Andrea L Gropman

47,XXY (Klinefelter syndrome [KS]) is the most common sex chromosomal aneuploidy (1:660), yet, despite this, only 25% of the males are ever diagnosed. Males with 47,XXY present with characteristic symptoms throughout their lifetime with typical physical and neurodevelopmental manifestations focused in growth, cognitive development, endocrine function, and reproduction. Studies have demonstrated that optimal outcomes are dependent on early detection combined with consistent and targeted neurodevelopmental treatment throughout the lifespan. During infancy and into the preschool years, individuals with 47,XXY commonly face deficits in growth and development in the areas of early hormonal, motor, speech, and behavioral development. As they transition into school, the primary neurodevelopmental concerns include language difficulty, executive dysfunction, behavior, and learning and reading deficits. Adults with 47,XXY often present with taller than average height, low levels of fertility, azoospermia, and elevated gonadotropin levels. These presentations may persist from early childhood through adulthood but can be mitigated by appropriate interventions. Early neurodevelopmental and hormonal treatment has been shown to have a minimizing effect on the physical and neurodevelopmental manifestations in individuals with 47,XXY. With innovative and current research studies, the features common to the neurodevelopmental profile of 47,XXY have been further expanded and defined. Further research is necessary to elucidate and understand the relationship between the brain, behavior, and the phenotypic profile of 47,XXY.

47.XXY(Klinefelter综合征[KS])是最常见的性染色体非整倍体(1:660),然而,尽管如此,只有25%的男性被诊断出来。47岁、XXY岁的男性一生都有特征性症状,典型的身体和神经发育表现集中在生长、认知发育、内分泌功能和生殖方面。研究表明,最佳结果取决于早期发现,并在整个生命周期内进行一致和有针对性的神经发育治疗。在婴儿期和学龄前,47岁、XXY的个体通常在早期激素、运动、言语和行为发育方面面临生长发育缺陷。当他们过渡到学校时,主要的神经发育问题包括语言困难、执行功能障碍、行为以及学习和阅读缺陷。47岁、XXY岁的成年人通常身高高于平均水平,生育能力低下,无精子症,促性腺激素水平升高。这些表现可能从儿童早期一直持续到成年,但可以通过适当的干预措施来缓解。早期神经发育和激素治疗已被证明对47,XXY患者的身体和神经发育表现的影响最小。随着创新和当前的研究,47,XXY的神经发育特征得到了进一步的扩展和定义。需要进一步的研究来阐明和理解大脑、行为和47,XXY表型特征之间的关系。
{"title":"Update On The Clinical Perspectives And Care Of The Child With 47,XXY (Klinefelter Syndrome).","authors":"Carole A Samango-Sprouse,&nbsp;Debra R Counts,&nbsp;Selena L Tran,&nbsp;Patricia C Lasutschinkow,&nbsp;Grace F Porter,&nbsp;Andrea L Gropman","doi":"10.2147/TACG.S180450","DOIUrl":"https://doi.org/10.2147/TACG.S180450","url":null,"abstract":"<p><p>47,XXY (Klinefelter syndrome [KS]) is the most common sex chromosomal aneuploidy (1:660), yet, despite this, only 25% of the males are ever diagnosed. Males with 47,XXY present with characteristic symptoms throughout their lifetime with typical physical and neurodevelopmental manifestations focused in growth, cognitive development, endocrine function, and reproduction. Studies have demonstrated that optimal outcomes are dependent on early detection combined with consistent and targeted neurodevelopmental treatment throughout the lifespan. During infancy and into the preschool years, individuals with 47,XXY commonly face deficits in growth and development in the areas of early hormonal, motor, speech, and behavioral development. As they transition into school, the primary neurodevelopmental concerns include language difficulty, executive dysfunction, behavior, and learning and reading deficits. Adults with 47,XXY often present with taller than average height, low levels of fertility, azoospermia, and elevated gonadotropin levels. These presentations may persist from early childhood through adulthood but can be mitigated by appropriate interventions. Early neurodevelopmental and hormonal treatment has been shown to have a minimizing effect on the physical and neurodevelopmental manifestations in individuals with 47,XXY. With innovative and current research studies, the features common to the neurodevelopmental profile of 47,XXY have been further expanded and defined. Further research is necessary to elucidate and understand the relationship between the brain, behavior, and the phenotypic profile of 47,XXY.</p>","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"12 ","pages":"191-202"},"PeriodicalIF":3.1,"publicationDate":"2019-10-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2147/TACG.S180450","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41215366","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 18
Genetic Analysis Of ABCA1 Gene Of Primary Glaucoma In Jordanian Arab Population 约旦阿拉伯人群原发性青光眼ABCA1基因的遗传分析
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2019-10-04 DOI: 10.2147/TACG.S213818
R. Alkhatib, Nada Abudhaim, L. Al-Eitan, N. Abdo, A. Alqudah, Hatem A. Aman
Background Glaucoma is a neurodegenerative disease that leads to progressive loss of retinal ganglion cells, causing irreversible visual field defects. At the present time, glaucoma is clinically defined but the exact etiology is unknown. The aim of this study is to genotype rs2472493 and rs2487032 SNIPs within ABCA1 gene in 52 Jordanian Arab patients with primary glaucoma and 96 control subjects, and also to investigate the genetic association of these SNPs with primary glaucoma. Methods DNA was extracted from both patients and controls according to a well-established procedure. Then, DNA was amplified by PCR using specific primers for this gene. Analysis of polymorphisms was carried out by using DNA sequencing genotyping method. Results The results showed that the two SNPs (rs2472493 and rs2487032) located upstream of ABCA1 gene have no significant associations with primary glaucoma disorder (P > 0.05). Conclusion This study is the first of its kind to reveal no genetic association between ABCA1 gene and primary glaucoma disorder in Jordanian population of Arab descent.
青光眼是一种神经退行性疾病,导致视网膜神经节细胞进行性丧失,造成不可逆的视野缺损。目前临床上对青光眼有明确的定义,但其确切的病因尚不清楚。本研究的目的是对52例约旦阿拉伯原发性青光眼患者和96例对照者的ABCA1基因内rs2472493和rs2487032 snp进行基因分型,并探讨这些snp与原发性青光眼的遗传关系。方法按既定程序提取患者和对照组的DNA。然后,利用该基因的特异性引物进行PCR扩增。采用DNA测序基因分型方法进行多态性分析。结果位于ABCA1基因上游的两个snp (rs2472493和rs2487032)与原发性青光眼疾病无显著相关性(P < 0.05)。结论本研究首次揭示ABCA1基因与约旦阿拉伯裔人群原发性青光眼疾病之间无遗传关联。
{"title":"Genetic Analysis Of ABCA1 Gene Of Primary Glaucoma In Jordanian Arab Population","authors":"R. Alkhatib, Nada Abudhaim, L. Al-Eitan, N. Abdo, A. Alqudah, Hatem A. Aman","doi":"10.2147/TACG.S213818","DOIUrl":"https://doi.org/10.2147/TACG.S213818","url":null,"abstract":"Background Glaucoma is a neurodegenerative disease that leads to progressive loss of retinal ganglion cells, causing irreversible visual field defects. At the present time, glaucoma is clinically defined but the exact etiology is unknown. The aim of this study is to genotype rs2472493 and rs2487032 SNIPs within ABCA1 gene in 52 Jordanian Arab patients with primary glaucoma and 96 control subjects, and also to investigate the genetic association of these SNPs with primary glaucoma. Methods DNA was extracted from both patients and controls according to a well-established procedure. Then, DNA was amplified by PCR using specific primers for this gene. Analysis of polymorphisms was carried out by using DNA sequencing genotyping method. Results The results showed that the two SNPs (rs2472493 and rs2487032) located upstream of ABCA1 gene have no significant associations with primary glaucoma disorder (P > 0.05). Conclusion This study is the first of its kind to reveal no genetic association between ABCA1 gene and primary glaucoma disorder in Jordanian population of Arab descent.","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"12 1","pages":"181 - 189"},"PeriodicalIF":3.1,"publicationDate":"2019-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2147/TACG.S213818","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47583181","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Gene Therapy For Beta-Thalassemia: Updated Perspectives β -地中海贫血的基因治疗:最新观点
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2019-09-01 DOI: 10.2147/TACG.S178546
Garyfalia Karponi, Nikolaos Zogas
Abstract Allogeneic hematopoietic stem cell transplantation was until very recently, the only permanent curative option available for patients suffering from transfusion-dependent beta-thalassemia. Gene therapy, by autologous transplantation of genetically modified hematopoietic stem cells, currently represents a novel therapeutic promise, after many years of extensive preclinical research for the optimization of gene transfer protocols. Nowadays, clinical trials being held on a worldwide setting, have demonstrated that, by re-establishing effective hemoglobin production, patients may be rendered transfusion- and chelation-independent and evade the immunological complications that normally accompany allogeneic hematopoietic stem cell transplantation. The present review will offer a retrospective scope of the long way paved towards successful implementation of gene therapy for beta-thalassemia, and will pinpoint the latest strategies employed to increase globin expression that extend beyond the classic transgene addition perspective. A thorough search was performed using Pubmed in order to identify studies that provide a proof of principle on the aforementioned topic at a preclinical and clinical level. Inclusion criteria also regarded gene transfer technologies of the past two decades, as well as publications outlining the pitfalls that precluded earlier successful implementation of gene therapy for beta-thalassemia. Overall, after decades of research, that included both successes and pitfalls, the path towards a permanent, donor-irrespective cure for beta-thalassemia patients is steadily becoming a realistic approach.
摘要直到最近,异基因造血干细胞移植还是输血依赖性β地中海贫血患者唯一的永久治疗选择。经过多年对基因转移方案优化的广泛临床前研究,通过转基因造血干细胞的自体移植进行的基因治疗目前代表着一种新的治疗前景。如今,在世界范围内进行的临床试验表明,通过重新建立有效的血红蛋白生产,患者可以独立于输血和螯合,并避免通常伴随异基因造血干细胞移植的免疫并发症。本综述将回顾成功实施β地中海贫血基因治疗的漫长道路,并将指出增加珠蛋白表达的最新策略,这些策略超越了经典的转基因添加视角。使用Pubmed进行了彻底的搜索,以确定在临床前和临床水平上提供上述主题原理证明的研究。纳入标准还考虑了过去二十年的基因转移技术,以及概述阻碍早期成功实施β地中海贫血基因治疗的陷阱的出版物。总的来说,经过几十年的研究,包括成功和陷阱,为β地中海贫血患者提供永久性的、不受捐赠者影响的治疗方法正逐渐成为一种现实的方法。
{"title":"Gene Therapy For Beta-Thalassemia: Updated Perspectives","authors":"Garyfalia Karponi, Nikolaos Zogas","doi":"10.2147/TACG.S178546","DOIUrl":"https://doi.org/10.2147/TACG.S178546","url":null,"abstract":"Abstract Allogeneic hematopoietic stem cell transplantation was until very recently, the only permanent curative option available for patients suffering from transfusion-dependent beta-thalassemia. Gene therapy, by autologous transplantation of genetically modified hematopoietic stem cells, currently represents a novel therapeutic promise, after many years of extensive preclinical research for the optimization of gene transfer protocols. Nowadays, clinical trials being held on a worldwide setting, have demonstrated that, by re-establishing effective hemoglobin production, patients may be rendered transfusion- and chelation-independent and evade the immunological complications that normally accompany allogeneic hematopoietic stem cell transplantation. The present review will offer a retrospective scope of the long way paved towards successful implementation of gene therapy for beta-thalassemia, and will pinpoint the latest strategies employed to increase globin expression that extend beyond the classic transgene addition perspective. A thorough search was performed using Pubmed in order to identify studies that provide a proof of principle on the aforementioned topic at a preclinical and clinical level. Inclusion criteria also regarded gene transfer technologies of the past two decades, as well as publications outlining the pitfalls that precluded earlier successful implementation of gene therapy for beta-thalassemia. Overall, after decades of research, that included both successes and pitfalls, the path towards a permanent, donor-irrespective cure for beta-thalassemia patients is steadily becoming a realistic approach.","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"12 1","pages":"167 - 180"},"PeriodicalIF":3.1,"publicationDate":"2019-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2147/TACG.S178546","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48234266","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 34
期刊
Application of Clinical Genetics
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1