首页 > 最新文献

Application of Clinical Genetics最新文献

英文 中文
Candidate Gene Analysis Of Alopecia Areata In Jordanian Population Of Arab Descent: A Case–Control Study 约旦阿拉伯人后裔斑秃的候选基因分析:一项病例对照研究
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2019-11-21 DOI: 10.2147/TACG.S226664
L. Al-Eitan, Rawan O. Al Momani, Khalid K Al Momani, Ahmad M Al Warawrah, Hanan A. Aljamal, M. Alghamdi, A. Muhanna, Firas A. Al-qarqaz
Background Alopecia areata (AA) is a non-cicatricial patchy hair loss on the scalp, face or other parts of the body. AA was found to be responsive to immunosuppressive therapies, a finding that supports an autoimmune basis for the disease. Several genetic studies have shown the significance of immunological factors as key genetic components in AA. Objective In this study, we aimed to investigate the genetic association of 7 single-nucleotide polymorphisms (SNPs) within five candidate genes including TAP1, CXCL1, CXCL2, HSPA1B, and TNFα with AA susceptibility in the Jordanian Arab population. Methods A case–control genetic association study conducted in 152 patients and 150 healthy individuals was performed using the sequenom MassARRAY system (iPLEX GOLD) to genotype the selected SNPs. Results rs1800629 SNP of the TNFα gene was significantly associated with AA in the heterozygous and rare homozygous genotypes (P=0.022 and P=0.0079, respectively) with no linkage of the TAP1, CXCL1, CXCL2 and HSPA1B variants. Conclusion This is the first study of its kind among the Jordanian population providing evidence of genetic association of the TNFα with AA susceptibility. Further genetic studies on Arab descent including other variants are required to clarify and strengthen the association of these genes with susceptibility to develop AA.
斑秃(AA)是一种发生在头皮、面部或身体其他部位的非瘢痕性斑状脱发。发现AA对免疫抑制疗法有反应,这一发现支持了该疾病的自身免疫基础。一些遗传学研究表明,免疫因子是AA的关键遗传成分。目的研究约旦阿拉伯人群中5个候选基因(包括TAP1、CXCL1、CXCL2、HSPA1B和TNFα) 7个单核苷酸多态性与AA易感性的遗传关系。方法采用测序MassARRAY系统(iPLEX GOLD)对152例患者和150例健康人进行病例对照遗传关联研究,对所选snp进行基因分型。结果TNFα基因rs1800629 SNP与AA在杂合子和罕见纯合子基因型中存在显著相关性(P=0.022和P=0.0079),而与TAP1、CXCL1、CXCL2和HSPA1B基因型无连锁关系。结论:这是首次在约旦人群中进行的此类研究,为TNFα与AA易感性的遗传关联提供了证据。需要对阿拉伯后裔进行进一步的遗传研究,包括其他变异,以澄清和加强这些基因与AA易感性的关联。
{"title":"Candidate Gene Analysis Of Alopecia Areata In Jordanian Population Of Arab Descent: A Case–Control Study","authors":"L. Al-Eitan, Rawan O. Al Momani, Khalid K Al Momani, Ahmad M Al Warawrah, Hanan A. Aljamal, M. Alghamdi, A. Muhanna, Firas A. Al-qarqaz","doi":"10.2147/TACG.S226664","DOIUrl":"https://doi.org/10.2147/TACG.S226664","url":null,"abstract":"Background Alopecia areata (AA) is a non-cicatricial patchy hair loss on the scalp, face or other parts of the body. AA was found to be responsive to immunosuppressive therapies, a finding that supports an autoimmune basis for the disease. Several genetic studies have shown the significance of immunological factors as key genetic components in AA. Objective In this study, we aimed to investigate the genetic association of 7 single-nucleotide polymorphisms (SNPs) within five candidate genes including TAP1, CXCL1, CXCL2, HSPA1B, and TNFα with AA susceptibility in the Jordanian Arab population. Methods A case–control genetic association study conducted in 152 patients and 150 healthy individuals was performed using the sequenom MassARRAY system (iPLEX GOLD) to genotype the selected SNPs. Results rs1800629 SNP of the TNFα gene was significantly associated with AA in the heterozygous and rare homozygous genotypes (P=0.022 and P=0.0079, respectively) with no linkage of the TAP1, CXCL1, CXCL2 and HSPA1B variants. Conclusion This is the first study of its kind among the Jordanian population providing evidence of genetic association of the TNFα with AA susceptibility. Further genetic studies on Arab descent including other variants are required to clarify and strengthen the association of these genes with susceptibility to develop AA.","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"12 1","pages":"221 - 228"},"PeriodicalIF":3.1,"publicationDate":"2019-11-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2147/TACG.S226664","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45577408","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
SLC22A1 And ATM Genes Polymorphisms Are Associated With The Risk Of Type 2 Diabetes Mellitus In Western Saudi Arabia: A Case-Control Study SLC22A1和ATM基因多态性与沙特阿拉伯西部2型糖尿病风险相关:一项病例对照研究
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2019-11-15 DOI: 10.2147/TACG.S229952
Rana M Altall, S. Qusti, Najlaa Filimban, A. Alhozali, N. A. Alotaibi, A. Dallol, A. Chaudhary, S. Bakhashab
Introduction Type 2 diabetes mellitus (T2DM) is a major global health problem that is progressively affected by genetic and environmental factors. The aim of this study is to determine the influence of solute carrier family 22 member 1 (SLC22A1) rs628031 and rs461473, and ataxia telangiectasia mutated (ATM) rs11212617 polymorphisms on the risk of T2DM in Saudi Arabia by considering many parameters associated with glycemic control of T2DM, such as body mass index (BMI), fasting blood glucose, glycated hemoglobin (HbA1c), and triglyceride. Methods In a case-control study, genomic DNA from controls and diabetic groups was isolated and genotyped for each single-nucleotide polymorphism. Results There were significant correlations between T2DM and both BMI and HbA1c. Significant associations between G/G and A/G genotypes of rs628031 and rs461473 variants of SLC22A1 and high levels of HbA1c were detected. Therefore, G was predicted to be the risk allele among the assessed SLC22A1 variants. A significant correlation was observed between A/A and A/C genotypes of the rs11212617 polymorphism of ATM and elevated HbA1c. Relative risk calculation confirmed A to be the risk allele in the T2DM population. Conclusion Our study showed the risk of the assessed SLC22A1 and ATM variants on glycemic control parameters in diabetic patients.
2型糖尿病(T2DM)是一种主要的全球性健康问题,它逐渐受到遗传和环境因素的影响。本研究的目的是通过考虑与T2DM血糖控制相关的许多参数,如体重指数(BMI)、空腹血糖、糖化血红蛋白(HbA1c)和甘油三酯,确定溶质载体家族22成员1 (SLC22A1) rs628031和rs461473以及失调性毛细血管扩张突变(ATM) rs11212617多态性对沙特阿拉伯T2DM风险的影响。方法采用病例对照研究方法,分别从对照组和糖尿病组中分离基因组DNA,并对每个单核苷酸多态性进行基因分型。结果T2DM与BMI、HbA1c均有显著相关性。SLC22A1 rs628031和rs461473变异的G/G和A/G基因型与高水平HbA1c之间存在显著相关性。因此,预测G是评估的SLC22A1变异中的风险等位基因。ATM rs11212617多态性的A/A和A/C基因型与HbA1c升高有显著相关性。相对风险计算证实A是T2DM人群的危险等位基因。结论我们的研究显示了SLC22A1和ATM变异对糖尿病患者血糖控制参数的风险。
{"title":"SLC22A1 And ATM Genes Polymorphisms Are Associated With The Risk Of Type 2 Diabetes Mellitus In Western Saudi Arabia: A Case-Control Study","authors":"Rana M Altall, S. Qusti, Najlaa Filimban, A. Alhozali, N. A. Alotaibi, A. Dallol, A. Chaudhary, S. Bakhashab","doi":"10.2147/TACG.S229952","DOIUrl":"https://doi.org/10.2147/TACG.S229952","url":null,"abstract":"Introduction Type 2 diabetes mellitus (T2DM) is a major global health problem that is progressively affected by genetic and environmental factors. The aim of this study is to determine the influence of solute carrier family 22 member 1 (SLC22A1) rs628031 and rs461473, and ataxia telangiectasia mutated (ATM) rs11212617 polymorphisms on the risk of T2DM in Saudi Arabia by considering many parameters associated with glycemic control of T2DM, such as body mass index (BMI), fasting blood glucose, glycated hemoglobin (HbA1c), and triglyceride. Methods In a case-control study, genomic DNA from controls and diabetic groups was isolated and genotyped for each single-nucleotide polymorphism. Results There were significant correlations between T2DM and both BMI and HbA1c. Significant associations between G/G and A/G genotypes of rs628031 and rs461473 variants of SLC22A1 and high levels of HbA1c were detected. Therefore, G was predicted to be the risk allele among the assessed SLC22A1 variants. A significant correlation was observed between A/A and A/C genotypes of the rs11212617 polymorphism of ATM and elevated HbA1c. Relative risk calculation confirmed A to be the risk allele in the T2DM population. Conclusion Our study showed the risk of the assessed SLC22A1 and ATM variants on glycemic control parameters in diabetic patients.","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"12 1","pages":"213 - 219"},"PeriodicalIF":3.1,"publicationDate":"2019-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2147/TACG.S229952","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43610477","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 8
TRIM5α 136Q, CCR5 Promoter 59029G And CCR264I Alleles Impact The Progression Of HIV In Children And Adolescents. TRIM5α 136Q, CCR5启动子59029G和CCR264I等位基因影响儿童和青少年HIV的进展
IF 2.6 Q2 GENETICS & HEREDITY Pub Date : 2019-11-07 eCollection Date: 2019-01-01 DOI: 10.2147/TACG.S205335
Béatrice Dambaya, Céline Nguefeu Nkenfou, Linda Mekue, Georges Této, Nicole Ngoufack, Georgia Ambada, Njiokou Flobert, Vittorio Colizzi, Ndjolo Alexis

Background: Children show various degrees of vulnerability regarding HIV infection and disease progression. This disparity presents challenges for the follow-up of infected children. Here we investigated reasons behind this variability focusing on some host-related HIV genes.

Methods: We screened 570 Cameroonian children and adolescents, aged 1 to 19 years old. Among them, 137 were followed over 4 years, from 2010 to 2015. Upon signing a proxy consent, children and adolescents were classified according to their age, CD4 count, viral load and clinical symptoms as long-term non-progressors (LTNP), slow progressors (SP) and rapid progressors (RP). Their blood was collected every 6 months and used for biological and host genetic polymorphism analyses. Five genes were genotyped: Trim5α (R136Q), CCR5 promoter 59029G, CCR2-64I, SDF 3'A and CCR5-Δ32. Exposed non-infected (HEU) and unexposed HIV negative children (HNEU) were recruited as control groups.

Results: Among the 5 genes studied, the protective allele of Trim5α (R136Q) was present in all LTNP and in 72.34% and 2.56% of SP and RP, respectively (p<0.0001). The CCR5 promoter 59029G/G was also more present in LTNP and SP than in RP (p=0.02; p=0.04). The protective CCR2-64I homozygous genotype was almost absent in all groups, only the heterozygous genotype was present with a significant difference between RP vs SP (p=0.0001), and SP vs LTNP (p=0.0002). The CCR2-∆32 was completely absent either as homozygous or heterozygous genotype. It was a monomorphic allele. SDF 3'A was almost present as homozygous wild-type genotype in our study population and was associated neither to disease acquisition nor to disease progression.

Conclusion: Among the 5 genes described in the study, Trim 5α (R136Q), CCR5 promoter 59029G and CCR2V64I alleles were associated to the progression of HIV infection in children and adolescents.

背景儿童在艾滋病毒感染和疾病进展方面表现出不同程度的脆弱性。这种差异对受感染儿童的后续行动提出了挑战。在这里,我们研究了这种变异性背后的原因,重点是一些与宿主相关的HIV基因。方法我们对570名1至19岁的喀麦隆儿童和青少年进行了筛查。其中,137人在2010年至2015年的4年时间里进行了随访。签署代理同意书后,儿童和青少年根据年龄、CD4计数、病毒载量和临床症状分为长期非进展型(LTNP)、缓慢进展型(SP)和快速进展型(RP)。每6个月采集一次他们的血液,用于生物和宿主基因多态性分析。对5个基因进行了基因分型:Trim5α(R136Q)、CCR5启动子59029G、CCR2-64I、SDF 3 A和CCR5-Δ32。暴露的未感染(HEU)和未暴露的HIV阴性儿童(HNEU)被招募为对照组。结果在所研究的5个基因中,保护性等位基因Trim5α(R136Q)在所有LTNP中均存在,在SP和RP中分别存在72.34%和2.56%(p<0.0001)。CCR5启动子59029G/G在LTNP和SP中的存在也高于RP(p=0.02;p=0.04),只有杂合基因型存在,RP与SP(p=0.0001)和SP与LTNP(p=0.0002)之间存在显著差异。CCR2-∆32完全不存在,无论是纯合型还是杂合型。这是一个单态等位基因。SDF 3âA在我们的研究人群中几乎以纯合野生型基因型的形式存在,与疾病获得和疾病进展无关。结论在研究中描述的5个基因中,Trim 5α(R136Q)、CCR5启动子59029G和CCR2V64I等位基因与儿童和青少年HIV感染的进展有关。
{"title":"TRIM5α 136Q, CCR5 Promoter 59029G And CCR264I Alleles Impact The Progression Of HIV In Children And Adolescents.","authors":"Béatrice Dambaya, Céline Nguefeu Nkenfou, Linda Mekue, Georges Této, Nicole Ngoufack, Georgia Ambada, Njiokou Flobert, Vittorio Colizzi, Ndjolo Alexis","doi":"10.2147/TACG.S205335","DOIUrl":"10.2147/TACG.S205335","url":null,"abstract":"<p><strong>Background: </strong>Children show various degrees of vulnerability regarding HIV infection and disease progression. This disparity presents challenges for the follow-up of infected children. Here we investigated reasons behind this variability focusing on some host-related HIV genes.</p><p><strong>Methods: </strong>We screened 570 Cameroonian children and adolescents, aged 1 to 19 years old. Among them, 137 were followed over 4 years, from 2010 to 2015. Upon signing a proxy consent, children and adolescents were classified according to their age, CD4 count, viral load and clinical symptoms as long-term non-progressors (LTNP), slow progressors (SP) and rapid progressors (RP). Their blood was collected every 6 months and used for biological and host genetic polymorphism analyses. Five genes were genotyped: <i>Trim5α (R136Q), CCR5</i> promoter <i>59029G, CCR2-64I, SDF 3'A</i> and <i>CCR5-Δ32</i>. Exposed non-infected (HEU) and unexposed HIV negative children (HNEU) were recruited as control groups.</p><p><strong>Results: </strong>Among the 5 genes studied, the protective allele of Trim5α (R136Q) was present in all LTNP and in 72.34% and 2.56% of SP and RP, respectively (p<0.0001). The CCR5 promoter 59029G/G was also more present in LTNP and SP than in RP (p=0.02; p=0.04). The protective CCR2-64I homozygous genotype was almost absent in all groups, only the heterozygous genotype was present with a significant difference between RP vs SP (p=0.0001), and SP vs LTNP (p=0.0002). The CCR2-∆32 was completely absent either as homozygous or heterozygous genotype. It was a monomorphic allele. SDF 3'A was almost present as homozygous wild-type genotype in our study population and was associated neither to disease acquisition nor to disease progression.</p><p><strong>Conclusion: </strong>Among the 5 genes described in the study, Trim 5α (R136Q), CCR5 promoter 59029G and CCR2V64I alleles were associated to the progression of HIV infection in children and adolescents.</p>","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"12 1","pages":"203-211"},"PeriodicalIF":2.6,"publicationDate":"2019-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6844200/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42679472","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Update On The Clinical Perspectives And Care Of The Child With 47,XXY (Klinefelter Syndrome). 47,XXY(克氏综合征)患儿的临床前景和护理更新。
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2019-10-23 eCollection Date: 2019-01-01 DOI: 10.2147/TACG.S180450
Carole A Samango-Sprouse, Debra R Counts, Selena L Tran, Patricia C Lasutschinkow, Grace F Porter, Andrea L Gropman

47,XXY (Klinefelter syndrome [KS]) is the most common sex chromosomal aneuploidy (1:660), yet, despite this, only 25% of the males are ever diagnosed. Males with 47,XXY present with characteristic symptoms throughout their lifetime with typical physical and neurodevelopmental manifestations focused in growth, cognitive development, endocrine function, and reproduction. Studies have demonstrated that optimal outcomes are dependent on early detection combined with consistent and targeted neurodevelopmental treatment throughout the lifespan. During infancy and into the preschool years, individuals with 47,XXY commonly face deficits in growth and development in the areas of early hormonal, motor, speech, and behavioral development. As they transition into school, the primary neurodevelopmental concerns include language difficulty, executive dysfunction, behavior, and learning and reading deficits. Adults with 47,XXY often present with taller than average height, low levels of fertility, azoospermia, and elevated gonadotropin levels. These presentations may persist from early childhood through adulthood but can be mitigated by appropriate interventions. Early neurodevelopmental and hormonal treatment has been shown to have a minimizing effect on the physical and neurodevelopmental manifestations in individuals with 47,XXY. With innovative and current research studies, the features common to the neurodevelopmental profile of 47,XXY have been further expanded and defined. Further research is necessary to elucidate and understand the relationship between the brain, behavior, and the phenotypic profile of 47,XXY.

47.XXY(Klinefelter综合征[KS])是最常见的性染色体非整倍体(1:660),然而,尽管如此,只有25%的男性被诊断出来。47岁、XXY岁的男性一生都有特征性症状,典型的身体和神经发育表现集中在生长、认知发育、内分泌功能和生殖方面。研究表明,最佳结果取决于早期发现,并在整个生命周期内进行一致和有针对性的神经发育治疗。在婴儿期和学龄前,47岁、XXY的个体通常在早期激素、运动、言语和行为发育方面面临生长发育缺陷。当他们过渡到学校时,主要的神经发育问题包括语言困难、执行功能障碍、行为以及学习和阅读缺陷。47岁、XXY岁的成年人通常身高高于平均水平,生育能力低下,无精子症,促性腺激素水平升高。这些表现可能从儿童早期一直持续到成年,但可以通过适当的干预措施来缓解。早期神经发育和激素治疗已被证明对47,XXY患者的身体和神经发育表现的影响最小。随着创新和当前的研究,47,XXY的神经发育特征得到了进一步的扩展和定义。需要进一步的研究来阐明和理解大脑、行为和47,XXY表型特征之间的关系。
{"title":"Update On The Clinical Perspectives And Care Of The Child With 47,XXY (Klinefelter Syndrome).","authors":"Carole A Samango-Sprouse,&nbsp;Debra R Counts,&nbsp;Selena L Tran,&nbsp;Patricia C Lasutschinkow,&nbsp;Grace F Porter,&nbsp;Andrea L Gropman","doi":"10.2147/TACG.S180450","DOIUrl":"https://doi.org/10.2147/TACG.S180450","url":null,"abstract":"<p><p>47,XXY (Klinefelter syndrome [KS]) is the most common sex chromosomal aneuploidy (1:660), yet, despite this, only 25% of the males are ever diagnosed. Males with 47,XXY present with characteristic symptoms throughout their lifetime with typical physical and neurodevelopmental manifestations focused in growth, cognitive development, endocrine function, and reproduction. Studies have demonstrated that optimal outcomes are dependent on early detection combined with consistent and targeted neurodevelopmental treatment throughout the lifespan. During infancy and into the preschool years, individuals with 47,XXY commonly face deficits in growth and development in the areas of early hormonal, motor, speech, and behavioral development. As they transition into school, the primary neurodevelopmental concerns include language difficulty, executive dysfunction, behavior, and learning and reading deficits. Adults with 47,XXY often present with taller than average height, low levels of fertility, azoospermia, and elevated gonadotropin levels. These presentations may persist from early childhood through adulthood but can be mitigated by appropriate interventions. Early neurodevelopmental and hormonal treatment has been shown to have a minimizing effect on the physical and neurodevelopmental manifestations in individuals with 47,XXY. With innovative and current research studies, the features common to the neurodevelopmental profile of 47,XXY have been further expanded and defined. Further research is necessary to elucidate and understand the relationship between the brain, behavior, and the phenotypic profile of 47,XXY.</p>","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"12 ","pages":"191-202"},"PeriodicalIF":3.1,"publicationDate":"2019-10-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2147/TACG.S180450","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41215366","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 18
Genetic Analysis Of ABCA1 Gene Of Primary Glaucoma In Jordanian Arab Population 约旦阿拉伯人群原发性青光眼ABCA1基因的遗传分析
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2019-10-04 DOI: 10.2147/TACG.S213818
R. Alkhatib, Nada Abudhaim, L. Al-Eitan, N. Abdo, A. Alqudah, Hatem A. Aman
Background Glaucoma is a neurodegenerative disease that leads to progressive loss of retinal ganglion cells, causing irreversible visual field defects. At the present time, glaucoma is clinically defined but the exact etiology is unknown. The aim of this study is to genotype rs2472493 and rs2487032 SNIPs within ABCA1 gene in 52 Jordanian Arab patients with primary glaucoma and 96 control subjects, and also to investigate the genetic association of these SNPs with primary glaucoma. Methods DNA was extracted from both patients and controls according to a well-established procedure. Then, DNA was amplified by PCR using specific primers for this gene. Analysis of polymorphisms was carried out by using DNA sequencing genotyping method. Results The results showed that the two SNPs (rs2472493 and rs2487032) located upstream of ABCA1 gene have no significant associations with primary glaucoma disorder (P > 0.05). Conclusion This study is the first of its kind to reveal no genetic association between ABCA1 gene and primary glaucoma disorder in Jordanian population of Arab descent.
青光眼是一种神经退行性疾病,导致视网膜神经节细胞进行性丧失,造成不可逆的视野缺损。目前临床上对青光眼有明确的定义,但其确切的病因尚不清楚。本研究的目的是对52例约旦阿拉伯原发性青光眼患者和96例对照者的ABCA1基因内rs2472493和rs2487032 snp进行基因分型,并探讨这些snp与原发性青光眼的遗传关系。方法按既定程序提取患者和对照组的DNA。然后,利用该基因的特异性引物进行PCR扩增。采用DNA测序基因分型方法进行多态性分析。结果位于ABCA1基因上游的两个snp (rs2472493和rs2487032)与原发性青光眼疾病无显著相关性(P < 0.05)。结论本研究首次揭示ABCA1基因与约旦阿拉伯裔人群原发性青光眼疾病之间无遗传关联。
{"title":"Genetic Analysis Of ABCA1 Gene Of Primary Glaucoma In Jordanian Arab Population","authors":"R. Alkhatib, Nada Abudhaim, L. Al-Eitan, N. Abdo, A. Alqudah, Hatem A. Aman","doi":"10.2147/TACG.S213818","DOIUrl":"https://doi.org/10.2147/TACG.S213818","url":null,"abstract":"Background Glaucoma is a neurodegenerative disease that leads to progressive loss of retinal ganglion cells, causing irreversible visual field defects. At the present time, glaucoma is clinically defined but the exact etiology is unknown. The aim of this study is to genotype rs2472493 and rs2487032 SNIPs within ABCA1 gene in 52 Jordanian Arab patients with primary glaucoma and 96 control subjects, and also to investigate the genetic association of these SNPs with primary glaucoma. Methods DNA was extracted from both patients and controls according to a well-established procedure. Then, DNA was amplified by PCR using specific primers for this gene. Analysis of polymorphisms was carried out by using DNA sequencing genotyping method. Results The results showed that the two SNPs (rs2472493 and rs2487032) located upstream of ABCA1 gene have no significant associations with primary glaucoma disorder (P > 0.05). Conclusion This study is the first of its kind to reveal no genetic association between ABCA1 gene and primary glaucoma disorder in Jordanian population of Arab descent.","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"12 1","pages":"181 - 189"},"PeriodicalIF":3.1,"publicationDate":"2019-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2147/TACG.S213818","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47583181","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Gene Therapy For Beta-Thalassemia: Updated Perspectives β -地中海贫血的基因治疗:最新观点
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2019-09-01 DOI: 10.2147/TACG.S178546
Garyfalia Karponi, Nikolaos Zogas
Abstract Allogeneic hematopoietic stem cell transplantation was until very recently, the only permanent curative option available for patients suffering from transfusion-dependent beta-thalassemia. Gene therapy, by autologous transplantation of genetically modified hematopoietic stem cells, currently represents a novel therapeutic promise, after many years of extensive preclinical research for the optimization of gene transfer protocols. Nowadays, clinical trials being held on a worldwide setting, have demonstrated that, by re-establishing effective hemoglobin production, patients may be rendered transfusion- and chelation-independent and evade the immunological complications that normally accompany allogeneic hematopoietic stem cell transplantation. The present review will offer a retrospective scope of the long way paved towards successful implementation of gene therapy for beta-thalassemia, and will pinpoint the latest strategies employed to increase globin expression that extend beyond the classic transgene addition perspective. A thorough search was performed using Pubmed in order to identify studies that provide a proof of principle on the aforementioned topic at a preclinical and clinical level. Inclusion criteria also regarded gene transfer technologies of the past two decades, as well as publications outlining the pitfalls that precluded earlier successful implementation of gene therapy for beta-thalassemia. Overall, after decades of research, that included both successes and pitfalls, the path towards a permanent, donor-irrespective cure for beta-thalassemia patients is steadily becoming a realistic approach.
摘要直到最近,异基因造血干细胞移植还是输血依赖性β地中海贫血患者唯一的永久治疗选择。经过多年对基因转移方案优化的广泛临床前研究,通过转基因造血干细胞的自体移植进行的基因治疗目前代表着一种新的治疗前景。如今,在世界范围内进行的临床试验表明,通过重新建立有效的血红蛋白生产,患者可以独立于输血和螯合,并避免通常伴随异基因造血干细胞移植的免疫并发症。本综述将回顾成功实施β地中海贫血基因治疗的漫长道路,并将指出增加珠蛋白表达的最新策略,这些策略超越了经典的转基因添加视角。使用Pubmed进行了彻底的搜索,以确定在临床前和临床水平上提供上述主题原理证明的研究。纳入标准还考虑了过去二十年的基因转移技术,以及概述阻碍早期成功实施β地中海贫血基因治疗的陷阱的出版物。总的来说,经过几十年的研究,包括成功和陷阱,为β地中海贫血患者提供永久性的、不受捐赠者影响的治疗方法正逐渐成为一种现实的方法。
{"title":"Gene Therapy For Beta-Thalassemia: Updated Perspectives","authors":"Garyfalia Karponi, Nikolaos Zogas","doi":"10.2147/TACG.S178546","DOIUrl":"https://doi.org/10.2147/TACG.S178546","url":null,"abstract":"Abstract Allogeneic hematopoietic stem cell transplantation was until very recently, the only permanent curative option available for patients suffering from transfusion-dependent beta-thalassemia. Gene therapy, by autologous transplantation of genetically modified hematopoietic stem cells, currently represents a novel therapeutic promise, after many years of extensive preclinical research for the optimization of gene transfer protocols. Nowadays, clinical trials being held on a worldwide setting, have demonstrated that, by re-establishing effective hemoglobin production, patients may be rendered transfusion- and chelation-independent and evade the immunological complications that normally accompany allogeneic hematopoietic stem cell transplantation. The present review will offer a retrospective scope of the long way paved towards successful implementation of gene therapy for beta-thalassemia, and will pinpoint the latest strategies employed to increase globin expression that extend beyond the classic transgene addition perspective. A thorough search was performed using Pubmed in order to identify studies that provide a proof of principle on the aforementioned topic at a preclinical and clinical level. Inclusion criteria also regarded gene transfer technologies of the past two decades, as well as publications outlining the pitfalls that precluded earlier successful implementation of gene therapy for beta-thalassemia. Overall, after decades of research, that included both successes and pitfalls, the path towards a permanent, donor-irrespective cure for beta-thalassemia patients is steadily becoming a realistic approach.","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"12 1","pages":"167 - 180"},"PeriodicalIF":3.1,"publicationDate":"2019-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2147/TACG.S178546","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48234266","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 34
Ketogenic diet in ATAD3A mutation carriers may not improve cerebellar atrophy but some clinical features [Letter] ATAD3A突变携带者的生酮饮食可能不会改善小脑萎缩,但会改善一些临床特征[信]
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2019-08-05 DOI: 10.2147/TACG.S221407
J. Finsterer
Krankenanstalt Rudolfstiftung, Messerli Institute, Vienna, Austria Dear editor With interest I read the article by Madhoun et al about a 4.5-year-old female with multisystem mitochondrial disorder (MID) due to the variant c.251T>C in the ATAD3A gene. The patient was reported to have profited from the ketogenic diet (KD) by slowing the progression of cerebellar atrophy, and improving vitality, interaction, moaning, carrying, tremor, and weakness. I have the following comments and concerns. It is quite unlikely that the cerebellar volume increased upon application of the KD. More likely is that the increase in the relative sagittal length of the cerebellum was due to variability of repeated measurements or simply due to the growing cerebellum in this developing child. Potential volumetric changes can be only confirmed by investigating a series of patients but not by assessing a single case. The tremor in the patient was attributed to Parkinsonism most likely upon the phenotype as a hand pill rolling tremor. We should be informed about the DatScan results, if the tremor responded to L-DOPA, and if there were any other stigmata of Parkinsonism in this patient. More likely than Parkinson's tremor is a cerebellar tremor in the light of progressive cerebellar atrophy. A hand pill rolling tremor may also occur with a cerebellar syndrome. MRI in figure 1 suggests that there was also atrophy of the spinal cord. It is conceivable that muscle weakness in the described patient was attributable to involvement of the anterior horn cells. Were there any indications for neuronopathy in the presented patient? Though optic atrophy may be a feature of ATAD3A mutations, it was not reported as a feature of the index case. Optic atrophy may be subtle and not visible on ophthalmologic or imaging investigations but only on functional tests. Thus, we should be informed if latency and amplitude of visually evoked potentials were prolonged respectively reduced. We should be informed if muscle weakness was attributed to affection of the central nervous system or due to myopathy. It should be mentioned if deep tendon reflexes were reduced or exaggerated. A normal needle EMG does not exclude myopathy. Since seizures have been reported as a phenotypic feature of ATAD3A mutations, we should be informed about the history in this regards and the EEG findings. Correspondence: Josef Finsterer Krankenanstalt Rudolfstiftung, Messerli Institute, Postfach 20, 1180 Vienna, Austria Tel +43 1 711 657 2085 Fax +43 17 1165 Email fifigs1@yahoo.de The Application of Clinical Genetics Dovepress open access to scientific and medical research
我很感兴趣地读了Madhoun等人写的一篇关于一名因ATAD3A基因C . 251t >C变异而患有多系统线粒体疾病(MID)的4.5岁女性的文章。据报道,患者从生酮饮食(KD)中获益,减缓了小脑萎缩的进展,改善了活力、互动、呻吟、携带、震颤和虚弱。我有以下看法和关切。应用KD后小脑体积增加的可能性不大。更有可能的是,小脑相对矢状长度的增加是由于重复测量的可变性,或者仅仅是由于这个发育中的孩子的小脑正在生长。潜在的体积变化只能通过调查一系列患者来确认,而不能通过评估单个病例来确认。患者的震颤归因于帕金森病,最可能的表型是手丸滚动震颤。我们应该被告知DatScan的结果,如果震颤对左旋多巴有反应,如果这个病人有其他帕金森病的症状。比起帕金森氏震颤,更有可能是小脑性震颤,因为小脑进行性萎缩。小脑综合征也可能伴有手滚丸性震颤。图1 MRI显示脊髓也有萎缩。可以想象,所述患者的肌肉无力是由于前角细胞受累所致。病人是否有神经病变的指征?虽然视神经萎缩可能是ATAD3A突变的一个特征,但没有作为索引病例的一个特征被报道。视神经萎缩在眼科或影像学检查中可能不明显,仅在功能检查中可见。因此,我们应该知道视觉诱发电位的潜伏期和振幅是否分别延长和减少。如果肌肉无力是由于中枢神经系统的影响或由于肌病,我们应该被告知。如果深腱反射减少或夸大,应注意。针刺肌电图正常不能排除肌病。由于癫痫发作已被报道为ATAD3A突变的表型特征,我们应该了解这方面的病史和脑电图结果。通讯:Josef Finsterer Krankenanstalt Rudolfstiftung, Messerli研究所,Postfach 20, 1180维也纳,奥地利电话+43 1 711 657 2085传真+43 17 1165电子邮件fifigs1@yahoo.de临床遗传学应用Dovepress开放获取科学和医学研究
{"title":"Ketogenic diet in ATAD3A mutation carriers may not improve cerebellar atrophy but some clinical features [Letter]","authors":"J. Finsterer","doi":"10.2147/TACG.S221407","DOIUrl":"https://doi.org/10.2147/TACG.S221407","url":null,"abstract":"Krankenanstalt Rudolfstiftung, Messerli Institute, Vienna, Austria Dear editor With interest I read the article by Madhoun et al about a 4.5-year-old female with multisystem mitochondrial disorder (MID) due to the variant c.251T>C in the ATAD3A gene. The patient was reported to have profited from the ketogenic diet (KD) by slowing the progression of cerebellar atrophy, and improving vitality, interaction, moaning, carrying, tremor, and weakness. I have the following comments and concerns. It is quite unlikely that the cerebellar volume increased upon application of the KD. More likely is that the increase in the relative sagittal length of the cerebellum was due to variability of repeated measurements or simply due to the growing cerebellum in this developing child. Potential volumetric changes can be only confirmed by investigating a series of patients but not by assessing a single case. The tremor in the patient was attributed to Parkinsonism most likely upon the phenotype as a hand pill rolling tremor. We should be informed about the DatScan results, if the tremor responded to L-DOPA, and if there were any other stigmata of Parkinsonism in this patient. More likely than Parkinson's tremor is a cerebellar tremor in the light of progressive cerebellar atrophy. A hand pill rolling tremor may also occur with a cerebellar syndrome. MRI in figure 1 suggests that there was also atrophy of the spinal cord. It is conceivable that muscle weakness in the described patient was attributable to involvement of the anterior horn cells. Were there any indications for neuronopathy in the presented patient? Though optic atrophy may be a feature of ATAD3A mutations, it was not reported as a feature of the index case. Optic atrophy may be subtle and not visible on ophthalmologic or imaging investigations but only on functional tests. Thus, we should be informed if latency and amplitude of visually evoked potentials were prolonged respectively reduced. We should be informed if muscle weakness was attributed to affection of the central nervous system or due to myopathy. It should be mentioned if deep tendon reflexes were reduced or exaggerated. A normal needle EMG does not exclude myopathy. Since seizures have been reported as a phenotypic feature of ATAD3A mutations, we should be informed about the history in this regards and the EEG findings. Correspondence: Josef Finsterer Krankenanstalt Rudolfstiftung, Messerli Institute, Postfach 20, 1180 Vienna, Austria Tel +43 1 711 657 2085 Fax +43 17 1165 Email fifigs1@yahoo.de The Application of Clinical Genetics Dovepress open access to scientific and medical research","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"12 1","pages":"161 - 162"},"PeriodicalIF":3.1,"publicationDate":"2019-08-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2147/TACG.S221407","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44908136","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Polymorphisms of CYP2C9*2, CYP2C9*3 and VKORC1 genes related to time in therapeutic range in patients with atrial fibrillation using warfarin. 使用华法林的心房颤动患者的CYP2C9*2、CYP2C9*3和VKORC1基因多态性与治疗范围内的时间相关。
IF 2.6 Q2 GENETICS & HEREDITY Pub Date : 2019-08-02 eCollection Date: 2019-01-01 DOI: 10.2147/TACG.S197316
Maria Mariana Barros Melo da Silveira, Leiliandry de Araújo Melo, Filipe Maia Ferreira Gomes, Leonardo José de Cupertino Barreto da Rocha Andrade, Isabela Paulino Serur, Isabelle Cecília de Vasconcellos Piscoya, Raposo Marina Gueiros, Kleyton Palmeira do Ó, Raul Emídio de Lima, Victor Arthur Eulálio Brasileiro, Luydson Richardson Silva Vasconcelos, Dário Celestino Sobral Filho

Introduction: Warfarin continues to be the most widely used anticoagulant in clinical practice around the world for the prevention of thromboembolic events in patients with atrial fibrillation (AF). The evaluation of the quality of anticoagulation control, estimated by time in therapeutic range (TTR), is accepted as a good method to evaluate the quality of anticoagulation. The variability of TTR can be explained by the presence of variants of the CYP2C9 and VKORC1 genes.

Methods: This study examined the association between polymorphisms of the CYP2C9 and VKORC1 genes and control of oral anticoagulation, through TTR, in patients with AF. A cross-sectional study was conducted within a cohort follow-up. The study comprised of 317 patients with AF, using warfarin, who were followed up for one year. The genotyping of genes CYP2C9 (rs1057910), (rs1799853) and VKORC1 (rs923231) was performed by PCR in real time, using TaqMan probes.

Results: Patients who had variant genotypes for the CYP2C9*3 gene (rs1057910) presented higher TTR (TTR 81-100%) when compared to when compared to the <45% and 46-60% TTR groups (p=0.005 and p=0.002, respectively). Regarding VKORC1 (rs923231), patients who had the variant genotype for the VKORC1 (rs923231) gene also presented a higher TTR (TTR 81-100%), when when compared to the <45% and 46-60% TTR groups (p=0.005 and p=0.004, respectively). In a multivariate model, VKORC1 (rs923231) remained associated for comparisons with the TTR groups (<45% vs 81-100% groups, p=0.01; and 46-60% vs 81-100% groups, p=0.01).

Conclusion: The genotypes of the CYP2C9*3 (AA) and VKORC1 -1639 (GG) genes were associated with the worst quality of anticoagulation control (TTR) in patients with AF using warfarin in the northeast of Brazil.

引言:华法林仍然是世界各地临床实践中应用最广泛的抗凝剂,用于预防心房颤动(AF)患者的血栓栓塞事件。通过治疗范围内的时间(TTR)来评估抗凝控制的质量,被认为是评估抗凝质量的好方法。TTR的变异性可以通过CYP2C9和VKORC1基因变异的存在来解释。方法:本研究通过TTR检测了心房颤动患者CYP2C9和VKORC1基因多态性与口服抗凝控制之间的关系。在队列随访中进行了横断面研究。这项研究包括317名使用华法林的房颤患者,他们接受了一年的随访。CYP2C9(rs1057910)、(rs1799853)和VKORC1(rs923231)基因的基因分型是使用TaqMan探针通过实时PCR进行的。结果:CYP2C9*3基因(rs1057910)变异基因型患者的TTR(TTR 81-100%)高于p=0.005和p=0.002。关于VKORC1(rs923231),与p分别为0.005和0.004的患者相比,具有VKORC1(rss923231)基因变异基因型的患者也表现出更高的TTR(TTR 81-100%)。在多变量模型中,VKORC1(rs923231)与TTR组的比较仍然相关(p=0.01;46-60%与81-100%组,p=0.01)。结论:在巴西东北部使用华法林的AF患者中,CYP2C9*3(AA)和VKORC1-1639(GG)基因型与最差的抗凝控制(TTR)质量相关。
{"title":"Polymorphisms of <i>CYP2C9*2, CYP2C9*3</i> and <i>VKORC1</i> genes related to time in therapeutic range in patients with atrial fibrillation using warfarin.","authors":"Maria Mariana Barros Melo da Silveira, Leiliandry de Araújo Melo, Filipe Maia Ferreira Gomes, Leonardo José de Cupertino Barreto da Rocha Andrade, Isabela Paulino Serur, Isabelle Cecília de Vasconcellos Piscoya, Raposo Marina Gueiros, Kleyton Palmeira do Ó, Raul Emídio de Lima, Victor Arthur Eulálio Brasileiro, Luydson Richardson Silva Vasconcelos, Dário Celestino Sobral Filho","doi":"10.2147/TACG.S197316","DOIUrl":"10.2147/TACG.S197316","url":null,"abstract":"<p><strong>Introduction: </strong>Warfarin continues to be the most widely used anticoagulant in clinical practice around the world for the prevention of thromboembolic events in patients with atrial fibrillation (AF). The evaluation of the quality of anticoagulation control, estimated by time in therapeutic range (TTR), is accepted as a good method to evaluate the quality of anticoagulation. The variability of TTR can be explained by the presence of variants of the <i>CYP2C9</i> and <i>VKORC1</i> genes.</p><p><strong>Methods: </strong>This study examined the association between polymorphisms of the <i>CYP2C9</i> and <i>VKORC1</i> genes and control of oral anticoagulation, through TTR, in patients with AF. A cross-sectional study was conducted within a cohort follow-up. The study comprised of 317 patients with AF, using warfarin, who were followed up for one year. The genotyping of genes <i>CYP2C9</i> (rs1057910), (rs1799853) and <i>VKORC1</i> (rs923231) was performed by PCR in real time, using TaqMan probes.</p><p><strong>Results: </strong>Patients who had variant genotypes for the <i>CYP2C9*3</i> gene (rs1057910) presented higher TTR (TTR 81-100%) when compared to when compared to the <45% and 46-60% TTR groups (<i>p</i>=0.005 and <i>p</i>=0.002, respectively). Regarding <i>VKORC1</i> (rs923231), patients who had the variant genotype for the <i>VKORC1</i> (rs923231) gene also presented a higher TTR (TTR 81-100%), when when compared to the <45% and 46-60% TTR groups (<i>p</i>=0.005 and <i>p</i>=0.004, respectively). In a multivariate model, <i>VKORC1</i> (rs923231) remained associated for comparisons with the TTR groups (<45% vs 81-100% groups, <i>p</i>=0.01; and 46-60% vs 81-100% groups, <i>p</i>=0.01).</p><p><strong>Conclusion: </strong>The genotypes of the <i>CYP2C9*3</i> (AA) and <i>VKORC1</i> -1639 (GG) genes were associated with the worst quality of anticoagulation control (TTR) in patients with AF using warfarin in the northeast of Brazil.</p>","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"12 ","pages":"151-159"},"PeriodicalIF":2.6,"publicationDate":"2019-08-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/08/84/tacg-12-151.PMC6684853.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41215365","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Ketogenic diet attenuates cerebellar atrophy progression in a subject with a biallelic variant at the ATAD3A locus [Response to Letter] 生酮饮食减轻ATAD3A基因座双等位基因变异受试者小脑萎缩的进展
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2019-08-01 DOI: 10.2147/TACG.S224520
A. Al Madhoun, Fahad Alnaser, Motasem Melhem, R. Nizam, Tala Al-Dabbous, F. Al-Mulla
Ashraf Al Madhoun Fahad Alnaser Motasem Melhem Rasheeba Nizam Tala Al-Dabbous Fahd Al-Mulla 1Genetics and Bioinformatics Department, Dasman Diabetes Institute, Dasman, 15462 Kuwait City, Kuwait; 2Animal and Imaging Core Facility Department, Dasman Diabetes Institute, Dasman, 15462 Kuwait City, Kuwait; 3Radiology Department, Ibn Sina Hospital, Ministry of Health, Kuwait City, Kuwait; 4Bayt Abdullah Children’s Hospice, NBK Children’s Cancer Hospital, Al-Adan ICU, Kuwait City, Kuwait Dear editor It is with great interest to read the comments of Dr. Josef Finsterer on our recent article, “Ketogenic diet attenuates cerebellar atrophy progression in a subject with a biallelic variant at the ATAD3A locus by Al Madhoun et al, 2019,” which has received a substantial article-level metrics and respond to the queries raised single nucleotide polymorphisms and deletion mutations within ATAD3 are lethal at embryonic stage or postnatally and the few survivors are living with low quality of life. Accordingly, ATAD3 genotyping enable prediction of genotype/phenotype relationship. Desai et al (2017) associated ATAD3 function with cholesterol homeostasis and maintenance of the mitochondrial genome stability. We thought that Ketogenic Diet (KD) may modulate mitochondrial biogenesis especially that it has proven efficacy in mitochondriopathies-mediated neurological disorders. Thus, it is not unrealistic to include KD treatment in a disease that is caused by ATAD3 gene mutations. The girl described in our paper is unique. She has been clinically evaluated extensively in Canada, but unfortunately, the family was not given a formal diagnosis. We diagnosed her with Harel-Yoon syndrome after discovering a novel pathogenic missense homozygous mutation in the ATAD3 gene (rs546711654 c.251C>T; p.Thr84Met). Globally, the variant allele frequency of rs546711654 is 0.0002 (https://www.ncbi.nlm.nih.gov/clinvar/variation/452865/). This information means that the disease is rare and therefore it is not possible to study other children harboring the same mutation. In response to KD, we never claimed an increase in the relative sagittal length of the cerebellum. But rather, an obvious slowing of her cerebellar atrophy. The KD was applied between the 2nd and 3rd MRI examination at the age of 4 and 5.5 years old. It has been reported that KD lowers the blood pH, increases ATP by shifting from glucoseto ketone-based metabolism. Although all body tissues are influenced by KD, the most prominent effect is on the nervous system activities. Accordingly, we do not exclude a positive effect on the muscle function. KD increases mitochondrial biogenesis. We agree that a real-effect of KD can only be assessed reliably in double-blind randomized clinical trials, but this is Correspondence: Fahd Al-Mulla Head of Genetics and Bioinformatics Department, Dasman Diabetes Institute, Dasman, 15462 Kuwait City, Kuwait Tel +9 652 224 2999 Ext. 2211 Email fahd@al-mulla.org The Application of Clinical Gene
1达斯曼糖尿病研究所遗传与生物信息部,科威特市达斯曼15462;2达斯曼糖尿病研究所动物与影像核心设施科,科威特达斯曼15462;3科威特市卫生部伊本西纳医院放射科;尊敬的编辑:我们非常有兴趣阅读Josef Finsterer博士对我们最近的一篇文章的评论,“Al Madhoun等人,2019年,在ATAD3A位点双等位基因变异的研究对象中,生酮饮食减缓了小脑萎缩的进展。”ATAD3内的单核苷酸多态性和缺失突变在胚胎期或出生后是致命的,少数幸存者生活质量很低。因此,ATAD3基因分型能够预测基因型/表型关系。Desai等人(2017)将ATAD3功能与胆固醇稳态和线粒体基因组稳定性的维持联系起来。我们认为生酮饮食(KD)可能调节线粒体生物发生,特别是它已被证明对线粒体病变介导的神经系统疾病有效。因此,在由ATAD3基因突变引起的疾病中纳入KD治疗并非不现实。我们报纸上描述的那个女孩是独一无二的。她在加拿大进行了广泛的临床评估,但不幸的是,家人没有得到正式的诊断。在发现ATAD3基因(rs546711654 c.251C>T;p.Thr84Met)。在全球范围内,rs546711654的变异等位基因频率为0.0002 (https://www.ncbi.nlm.nih.gov/clinvar/variation/452865/)。这一信息意味着这种疾病是罕见的,因此不可能研究其他携带相同突变的儿童。在对KD的反应中,我们从未声称小脑的相对矢状长度增加。而是她小脑萎缩的明显减缓。KD应用于4岁至5.5岁第2次和第3次MRI检查之间。据报道,KD降低血液pH值,增加ATP,从葡萄糖为基础的代谢转变为酮。虽然所有的身体组织都受到KD的影响,但最显著的影响是对神经系统的活动。因此,我们不排除对肌肉功能的积极影响。KD增加线粒体生物发生。我们同意,KD的实际效果只能在双盲随机临床试验中可靠地评估,但这是通信:Fahd Al-Mulla遗传和生物信息部主任,Dasman糖尿病研究所,Dasman, 15462科威特城,科威特电话+9 652 224 2999 Ext. 2211电子邮件fahd@al-mulla.org临床遗传学应用Dovepress开放获取科学和医学研究
{"title":"Ketogenic diet attenuates cerebellar atrophy progression in a subject with a biallelic variant at the ATAD3A locus [Response to Letter]","authors":"A. Al Madhoun, Fahad Alnaser, Motasem Melhem, R. Nizam, Tala Al-Dabbous, F. Al-Mulla","doi":"10.2147/TACG.S224520","DOIUrl":"https://doi.org/10.2147/TACG.S224520","url":null,"abstract":"Ashraf Al Madhoun Fahad Alnaser Motasem Melhem Rasheeba Nizam Tala Al-Dabbous Fahd Al-Mulla 1Genetics and Bioinformatics Department, Dasman Diabetes Institute, Dasman, 15462 Kuwait City, Kuwait; 2Animal and Imaging Core Facility Department, Dasman Diabetes Institute, Dasman, 15462 Kuwait City, Kuwait; 3Radiology Department, Ibn Sina Hospital, Ministry of Health, Kuwait City, Kuwait; 4Bayt Abdullah Children’s Hospice, NBK Children’s Cancer Hospital, Al-Adan ICU, Kuwait City, Kuwait Dear editor It is with great interest to read the comments of Dr. Josef Finsterer on our recent article, “Ketogenic diet attenuates cerebellar atrophy progression in a subject with a biallelic variant at the ATAD3A locus by Al Madhoun et al, 2019,” which has received a substantial article-level metrics and respond to the queries raised single nucleotide polymorphisms and deletion mutations within ATAD3 are lethal at embryonic stage or postnatally and the few survivors are living with low quality of life. Accordingly, ATAD3 genotyping enable prediction of genotype/phenotype relationship. Desai et al (2017) associated ATAD3 function with cholesterol homeostasis and maintenance of the mitochondrial genome stability. We thought that Ketogenic Diet (KD) may modulate mitochondrial biogenesis especially that it has proven efficacy in mitochondriopathies-mediated neurological disorders. Thus, it is not unrealistic to include KD treatment in a disease that is caused by ATAD3 gene mutations. The girl described in our paper is unique. She has been clinically evaluated extensively in Canada, but unfortunately, the family was not given a formal diagnosis. We diagnosed her with Harel-Yoon syndrome after discovering a novel pathogenic missense homozygous mutation in the ATAD3 gene (rs546711654 c.251C&gt;T; p.Thr84Met). Globally, the variant allele frequency of rs546711654 is 0.0002 (https://www.ncbi.nlm.nih.gov/clinvar/variation/452865/). This information means that the disease is rare and therefore it is not possible to study other children harboring the same mutation. In response to KD, we never claimed an increase in the relative sagittal length of the cerebellum. But rather, an obvious slowing of her cerebellar atrophy. The KD was applied between the 2nd and 3rd MRI examination at the age of 4 and 5.5 years old. It has been reported that KD lowers the blood pH, increases ATP by shifting from glucoseto ketone-based metabolism. Although all body tissues are influenced by KD, the most prominent effect is on the nervous system activities. Accordingly, we do not exclude a positive effect on the muscle function. KD increases mitochondrial biogenesis. We agree that a real-effect of KD can only be assessed reliably in double-blind randomized clinical trials, but this is Correspondence: Fahd Al-Mulla Head of Genetics and Bioinformatics Department, Dasman Diabetes Institute, Dasman, 15462 Kuwait City, Kuwait Tel +9 652 224 2999 Ext. 2211 Email fahd@al-mulla.org The Application of Clinical Gene","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"12 1","pages":"163 - 165"},"PeriodicalIF":3.1,"publicationDate":"2019-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2147/TACG.S224520","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47382108","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
First report case with negative genetic study (array CGH, exome sequencing) in patients with vertical transmission of Zika virus infection and associated brain abnormalities 首次报告寨卡病毒垂直传播感染和相关大脑异常患者的阴性基因研究(阵列CGH,外显子组测序)病例
IF 3.1 Q2 GENETICS & HEREDITY Pub Date : 2019-07-30 DOI: 10.2147/TACG.S190661
E. Candelo, G. Caicedo, F. Rosso, A. Ballesteros, Jaime Orrego, L. E. Escobar, P. Lapunzina, J. Nevado, H. Pachajoa
Introduction Zika virus (ZIKV) is a little-known emerging mosquito-borne flavivirus. The perinatal ZIKV infection was associated with birth defects during the Brazilian outbreak. There was an increased risk of intrauterine transmission of the virus and a marked increase in the number of newborns with microcephaly. We report on two such cases. Case Report The first case was a 25-year-old pregnant woman from Colombia who became acutely ill with general symptoms during the tenth week of gestation, followed by severe generalized itching and maculopapular rash for approximately five days. This case was reported during the epidemic stage of the ZIKV infection in Colombia. At 23.3 gestational weeks, ultrasonography showed abnormal intracranial anatomy with cerebral ventriculomegaly, microcephaly, and parenchymal calcification. Given the grave prognosis, the patient elected to terminate the pregnancy at 25 gestational weeks. The second case was a 24-year-old pregnant woman who became acutely ill during the 17th week of gestation, which corresponded with the ZIKV epidemic in Colombia. At 30.5 gestational weeks, ultrasonography showed isolated fetal cerebral ventriculomegaly. We detected ZIKV in the amniotic fluid; however, the virus was not detected in the urine or serum of the mother or fetus. Tests for dengue virus, chikungunya virus, Toxoplasma gondii, rubella virus, cytomegalovirus, herpes simplex virus, HIV, hepatitis B and C, and parvovirus B19 were all negative. Different samples obtained from the placenta, amniotic liquid, and cerebrospinal fluid were positive for viral isolation of ZIKV RNA using TaqMan RT-PCR. Additionally, the parents and fetuses were tested for genetic diseases using whole exome sequencing and array CGH to rule out possible genetic syndromes that produce these congenital abnormalities. Conclusion These were the first cases in Colombia to show early vertical transmission of ZIKV and the first cases associated with congenital cerebral abnormalities in which molecular, infectious, and genomic tests were performed.
寨卡病毒(ZIKV)是一种鲜为人知的蚊子传播的黄病毒。围产期ZIKV感染与巴西疫情期间的出生缺陷有关。病毒宫内传播的风险增加,小头畸形新生儿的数量显著增加。我们报告了两起此类案件。病例报告第一例是一名来自哥伦比亚的25岁孕妇,她在妊娠第十周出现急性全身症状,随后约五天出现严重的全身瘙痒和斑丘疹。该病例是在哥伦比亚ZIKV感染的流行阶段报告的。妊娠23.3周时,超声检查显示颅内解剖异常,伴有脑室肥大、小头畸形和实质钙化。鉴于预后严重,患者选择在妊娠25周时终止妊娠。第二个病例是一名24岁的孕妇,她在妊娠第17周患上了急性疾病,这与哥伦比亚的ZIKV疫情相对应。孕30.5周时,超声检查显示胎儿孤立性脑室肥大。我们在羊水中检测到ZIKV;然而,在母亲或胎儿的尿液或血清中没有检测到病毒。登革热病毒、基孔肯雅病毒、弓形虫、风疹病毒、巨细胞病毒、单纯疱疹病毒、艾滋病毒、乙型和丙型肝炎以及细小病毒B19的检测均为阴性。从胎盘、羊水和脑脊液中获得的不同样本使用TaqMan RT-PCR对ZIKV RNA的病毒分离呈阳性。此外,使用全外显子组测序和阵列CGH对父母和胎儿进行遗传疾病检测,以排除可能导致这些先天性异常的遗传综合征。结论这是哥伦比亚第一例显示ZIKV早期垂直传播的病例,也是第一例进行分子、感染和基因组检测的与先天性大脑异常相关的病例。
{"title":"First report case with negative genetic study (array CGH, exome sequencing) in patients with vertical transmission of Zika virus infection and associated brain abnormalities","authors":"E. Candelo, G. Caicedo, F. Rosso, A. Ballesteros, Jaime Orrego, L. E. Escobar, P. Lapunzina, J. Nevado, H. Pachajoa","doi":"10.2147/TACG.S190661","DOIUrl":"https://doi.org/10.2147/TACG.S190661","url":null,"abstract":"Introduction Zika virus (ZIKV) is a little-known emerging mosquito-borne flavivirus. The perinatal ZIKV infection was associated with birth defects during the Brazilian outbreak. There was an increased risk of intrauterine transmission of the virus and a marked increase in the number of newborns with microcephaly. We report on two such cases. Case Report The first case was a 25-year-old pregnant woman from Colombia who became acutely ill with general symptoms during the tenth week of gestation, followed by severe generalized itching and maculopapular rash for approximately five days. This case was reported during the epidemic stage of the ZIKV infection in Colombia. At 23.3 gestational weeks, ultrasonography showed abnormal intracranial anatomy with cerebral ventriculomegaly, microcephaly, and parenchymal calcification. Given the grave prognosis, the patient elected to terminate the pregnancy at 25 gestational weeks. The second case was a 24-year-old pregnant woman who became acutely ill during the 17th week of gestation, which corresponded with the ZIKV epidemic in Colombia. At 30.5 gestational weeks, ultrasonography showed isolated fetal cerebral ventriculomegaly. We detected ZIKV in the amniotic fluid; however, the virus was not detected in the urine or serum of the mother or fetus. Tests for dengue virus, chikungunya virus, Toxoplasma gondii, rubella virus, cytomegalovirus, herpes simplex virus, HIV, hepatitis B and C, and parvovirus B19 were all negative. Different samples obtained from the placenta, amniotic liquid, and cerebrospinal fluid were positive for viral isolation of ZIKV RNA using TaqMan RT-PCR. Additionally, the parents and fetuses were tested for genetic diseases using whole exome sequencing and array CGH to rule out possible genetic syndromes that produce these congenital abnormalities. Conclusion These were the first cases in Colombia to show early vertical transmission of ZIKV and the first cases associated with congenital cerebral abnormalities in which molecular, infectious, and genomic tests were performed.","PeriodicalId":39131,"journal":{"name":"Application of Clinical Genetics","volume":"12 1","pages":"141 - 150"},"PeriodicalIF":3.1,"publicationDate":"2019-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2147/TACG.S190661","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45975542","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
期刊
Application of Clinical Genetics
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1