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Geochemical evidences linking the Lower Cretaceous source rocks to the biodegraded bitumen seeps and tar sands in the Gulf of Guinea Basin 将下白垩统源岩与几内亚湾盆地生物降解沥青渗漏和焦油砂联系起来的地球化学证据
IF 2.6 3区 地球科学 Q2 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2024-10-04 DOI: 10.1016/j.orggeochem.2024.104866
Abdulkareem Toyin , Ningning Zhong , Falilat Omotolani Idris , Olabisi Adekeye , Shengbao Shi
The source of biodegraded bitumen seeps and tar sands in the Nigerian axis of the Gulf of Guinea province has been a contentious issue for decades. The most prevalent opinion is that the biodegraded bitumen seeps are migration oils that were degraded by bacterial. In the present study, outcrop source rocks (Lower Cretaceous), core samples (Upper Cretaceous) from a shallow well-x, and bitumen seeps and tar sands from the eastern axis of the Dahomey Basin of Nigeria were analyzed. Rock-Eval™ pyrolysis show that the outcrop rocks are classified as having excellent-very good source quality; in contrast, those from well-x are classified as having only poor-fair quality. The cross plot of hydrogen index (HI) against Tmax indicates that samples from the outcrops contain type II/III organic matter, whereas well samples contain type III organic matter and all source rocks are thermally immature, which is supported by vitrinite reflectance (Ro: 0.20–0.48 %), and biomarker maturity parameters (C32 (S/S + R), MPI-I). In the bitumen seeps and tar sands, isoprenoids, n-alkanes, steranes and hopanes have been degraded, and tricyclic and tetracyclic terpanes are still mostly intact. In addition, C30 hopane and homohopanes have been demethylated, and C25 norhopanes are present in abundance, suggesting that the bitumen seeps and tar sands experienced heavy biodegradation in the range of PM-6 or greater. The distribution of 4,9-DMD, 4,8-DMD and 3,4-DMD diamondoids and the δ13C of saturate and aromatic fractions indicate that the bitumen seeps and tar sands were generated from Types II and III source rocks. The ratio of demethylated Ts/Tm indicates that the samples are low maturity and were generated from immature source rocks. Cross plots of tricyclic terpane ratios (C25/C26TT vs C25TT/C24TeT, C23/C21TT vs (C19+20)/C23TT, and C24TeT/C24TeT + C26TT vs (C19+20)/C23TT) also reveal that the biodegraded bitumen seeps and tar sands are closely related to source rocks in outcrop groups 1 and 2. This conclusion is supported by the ternary plots of tricyclic terpanes, 4,9DMD, 4,8DMD and 3,4DMD diamondoids, and the cross plot of EAI against DMDI-1. The occurrence of exsudatinite in the outcrop source rocks in group 1, consistent with early hydrocarbon generation, and the low ratio of demethylated Ts/Tm (<1) in the bitumen samples confirms that the biodegraded bitumen seeps and tar sands in the Nigerian Dahomey Basin were generated by the Lower Cretaceous source rocks in group 1. The study advances on the previous propositions on the source of bitumen seeps and tar sands and contributes our knowledge in the Gulf of Guinea Basin.
几十年来,几内亚湾省尼日利亚轴线地区生物降解沥青渗漏和焦油砂的来源一直是一个有争议的问题。最普遍的观点认为,生物降解沥青渗漏是被细菌降解的迁移油。本研究分析了尼日利亚达荷美盆地东轴线的露头源岩(下白垩统)、浅井岩芯样本(上白垩统)以及沥青渗漏和焦油砂。Rock-Eval™热解结果表明,露头岩的岩源质量被划分为极好-非常好;相比之下,来自 x 井的岩源质量被划分为较差-一般。氢指数(HI)与 Tmax 的交叉图表明,露头岩样品含有 II/III 类有机质,而井样品含有 III 类有机质,所有源岩的热成熟度都不高,这一点得到了玻璃光泽反射率(Ro:0.20-0.48 %)和生物标记成熟度参数(C32 (S/S + R)、MPI-I)的支持。在沥青渗漏和焦油砂中,异戊烯、正烷烃、甾烷和烷烃已经降解,而三环和四环萜类大部分仍完好无损。此外,C30 霍烷和均霍烷已经去甲基化,C25 诺霍烷也大量存在,这表明沥青渗漏和焦油砂经历了 PM-6 或更大范围的严重生物降解。4,9-DMD、4,8-DMD 和 3,4-DMD 金刚烷的分布以及饱和馏分和芳香馏分的 δ13C 表明,沥青渗漏和焦油砂产生于 II 类和 III 类源岩。脱甲基 Ts/Tm 的比率表明,样本的成熟度较低,是由不成熟的源岩生成的。三环萜烷比率(C25/C26TT 与 C25TT/C24TeT、C23/C21TT 与 (C19+20)/C23TT、C24TeT/C24TeT + C26TT 与 (C19+20)/C23TT)的交叉图也显示,生物降解沥青渗漏和焦油砂与第 1 和第 2 露头组的源岩密切相关。三环萜、4,9DMD、4,8DMD 和 3,4DMD 金刚烷的三元图以及 EAI 与 DMDI-1 的交叉图都支持这一结论。第 1 组露头源岩中出现的外渗岩与早期碳氢化合物的生成相一致,而沥青样品中去甲基化 Ts/Tm 的低比率(<1)证实了尼日利亚达荷美盆地的生物降解沥青渗漏和焦油砂是由第 1 组下白垩统源岩生成的。 该研究推进了之前关于沥青渗漏和焦油砂来源的假设,并有助于我们对几内亚湾盆地的了解。
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引用次数: 0
Maturity characterization and formation mechanisms of nano-scale anisotropic pyrobitumen based on atomic force microscopy (AFM) 基于原子力显微镜(AFM)的纳米级各向异性焦沥青的成熟度表征和形成机理
IF 2.6 3区 地球科学 Q2 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2024-09-26 DOI: 10.1016/j.orggeochem.2024.104879
Zhaoxi Zuo , Jian Cao , Wenxuan Hu , Ruijie Zhang , Xiaolin Wang , Suping Yao , Bing Luo , Jingkun Zhang
Highly evolved pyrobitumen is an important and realistic object for maturity characterization of ancient and deeply buried organic matter, but measurement of its reflectance is challenging due to its strong optical anisotropy and nano-scale relief. Here we conducted a case study in the Sinian (Ediacaran) Dengying Formation of the Sichuan Basin, China. High-resolution, three-dimensional, morphological imaging by atomic force microscopy (AFM), laser Raman (LRM) spectroscopy, and reflectance studies were conducted on the reservoir pyrobitumen. Our results show that Young’s modulus and adhesion, which are mechanical maturity parameter, provides effective characterization of maturity. The increase in Young’s modulus of pyrobitumen lags that of the vitrinite, given that pyrobitumen is formed by oil cracking and is more hydrogen-rich than vitrinite. A quantitative relationship between Young’s modulus, adhesion and reflectance in bright and dark areas of pyrobitumen was established, which can be used for maturity characterization. The changes in Young’s modulus of the pyrobitumen is related to the condensation of organic matter and directional arrangement of microcrystals. Young’s modulus of organic matter is a robust mechanical maturity index at high organic matter maturity (Ro > 2.0 %), but it is important to pay attention to the influence of anisotropy. Compared to Young’s modulus, adhesion is less affected by anisotropy. The nano-mechanics such as Young’s modulus and adhesion will be new maturity indicator in addition to conventional optical and spectroscopic method. The nano-mechanical properties of organic matter are expected to be applied to maturity indicators and macerals classification in the field of organic petrology in the further research.
高度演化的热沥青是表征古代和深埋有机物成熟度的一个重要而现实的对象,但由于其强烈的光学各向异性和纳米级的浮雕,对其反射率的测量具有挑战性。在此,我们对中国四川盆地的新元古代(埃迪卡拉纪)登瀛地层进行了案例研究。通过原子力显微镜(AFM)、激光拉曼光谱(LRM)和反射率研究,对储层火成岩进行了高分辨率、三维形态成像。研究结果表明,杨氏模量和附着力作为力学成熟度参数,可有效表征成熟度。由于焦沥青是由石油裂解形成的,比矾土更富含氢,因此焦沥青杨氏模量的增长滞后于矾土。杨氏模量、附着力与火成沥青亮区和暗区的反射率之间建立了定量关系,可用于成熟度表征。高温沥青杨氏模量的变化与有机物的凝结和微晶的定向排列有关。在有机质成熟度较高(Ro > 2.0 %)时,有机质的杨氏模量是一个可靠的机械成熟度指标,但必须注意各向异性的影响。与杨氏模量相比,粘附力受各向异性的影响较小。除了传统的光学和光谱方法外,杨氏模量和附着力等纳米力学性能将成为新的成熟度指标。有机物的纳米力学性能有望在进一步的研究中应用于有机岩石学领域的成熟度指标和宏观矿物分类。
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引用次数: 0
Annotation of DOM metabolomes with an ultrahigh resolution mass spectrometry molecular formula library 利用超高分辨率质谱分子式库对 DOM 代谢组进行注释
IF 2.6 3区 地球科学 Q2 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2024-09-25 DOI: 10.1016/j.orggeochem.2024.104880
Nicole R. Coffey , Christian Dewey , Kieran Manning , Yuri Corilo , William Kew , Lydia Babcock-Adams , Amy M. McKenna , Rhona K. Stuart , Rene M. Boiteau
Increased accessibility of liquid chromatography mass spectrometry (LC-MS) metabolomics instrumentation and software have expanded their use in studies of dissolved organic matter (DOM) and exometabolites released by microbes. Current strategies to annotate metabolomes generally rely on matching tandem MS/MS spectra to databases of authentic standards. However, spectral matching approaches typically have low annotation rates for DOM. An alternative approach is to annotate molecular formula based on accurate mass and isotopic fine structure measurements that can be obtained from state-of-the-art ultrahigh resolution Fourier Transform Ion Cyclotron Resonance mass spectrometry (FT-ICR MS), but instrument accessibility for large metabolomic studies is generally limited. Here, we describe a strategy to annotate exometabolomes obtained from lower resolution LC-MS systems by matching metabolomic features to a molecular formula library generated for a representative sample analyzed by LC 21T- FT-ICR MS. The molecular formula library approach successfully annotated 53% of exometabolome features of the marine diatom Phaeodactylum tricornutum – a nearly ten-fold increase over the 6% annotation rate achieved using a conventional MS/MS approach. There was 94% agreement between assigned formula that were annotated with both approaches, and mass error analysis of the discrepancies suggested that the FT-ICR MS formula assignments were more reliable. Differences in the exometabolome of P. tricornutum grown under iron replete and iron limited conditions revealed 668 significant metabolites, including a suite of peptide-like molecules released by P. tricornutum in response to iron deficiency. These findings demonstrate the utility of FT-ICR MS formula libraries for extending the accuracy and comprehensiveness of metabolome annotations.
液相色谱质谱(LC-MS)代谢组学仪器和软件的普及扩大了其在溶解有机物(DOM)和微生物释放的外代谢物研究中的应用。目前注释代谢组的策略一般依赖于将串联 MS/MS 图谱与真实标准数据库进行匹配。然而,光谱匹配法对 DOM 的注释率通常较低。另一种方法是根据最先进的超高分辨率傅立叶变换离子回旋共振质谱(FT-ICR MS)获得的精确质量和同位素精细结构测量结果来注释分子式,但大型代谢组学研究的仪器可及性通常有限。在此,我们介绍了一种通过将代谢组学特征与 LC 21T- FT-ICR MS 分析的代表性样品生成的分子式库进行匹配来注释从低分辨率 LC-MS 系统获得的外代谢组的策略。分子式库方法成功地注释了海洋硅藻 Phaeodactylum tricornutum 53% 的外代谢组特征,比传统 MS/MS 方法的 6% 注释率提高了近 10 倍。两种方法注释的分配公式之间的一致性达到 94%,对差异进行的质量误差分析表明,FT-ICR MS 公式分配更可靠。在缺铁和缺铁条件下生长的三疣梭子蟹外代谢组的差异揭示了 668 种重要的代谢物,其中包括三疣梭子蟹在缺铁时释放的一系列肽类分子。这些发现证明了 FT-ICR MS 配方库在提高代谢组注释的准确性和全面性方面的实用性。
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引用次数: 0
Abiotic chlorination of organic matter in the soil environment: A simulation study 土壤环境中有机物的非生物氯化:模拟研究
IF 2.6 3区 地球科学 Q2 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2024-09-19 DOI: 10.1016/j.orggeochem.2024.104877
Fanfan Ju , Liuzhu Chen , Yaoyao Kong , Teng Ma , Chi Zhang , Zhanqiang Chen
Chlorination of organic matter occurs naturally and is an important part of the chlorine cycle. To investigate the likelihood that inorganic oxidants, (Fe(NO3)3, H2O2, and hydroxyl radicals (·OH), frequently present in soil environments, could promote the synthesis of chlorinated organic matter in the soil environment, litterfall, humus, and soil (0–20 cm) were collected and used in laboratory based simulation experiments. Results indicate that these inorganic oxidants might promote the synthesis of chlorinated organic matter, but their impact varied due to varying suitable reaction circumstances. Litterfall was the most sensitive to chlorination, likely caused by the presence of abundant amounts of labile organic matter, and the chlorination process was limited by its Cl level. Hydroxyl radicals showed a dual effect (producing or degrading chlorinated organic matter) on the three materials assessed, which was controlled by both ·OH concentration and the stability of organic matter, and the dual effect was evident in order of litterfall > humus > soil. The Fe(NO3)3-mediated chlorination of organic matter was only significant in litterfall due to its labile organic matter composition, while the peroxidative reaction caused by H2O2 in the producing chlorinated organic matter was only obvious in soil, most likely due to the presence of metals, facilitating the process. Combined this study sheds light on the chlorine cycle by verifying that inorganic oxidants might mediate abiotic chlorination of organic matter in a natural soil environment.
有机物的氯化是自然发生的,也是氯循环的重要组成部分。为了研究土壤环境中经常存在的无机氧化剂(Fe(NO3)3、H2O2 和羟基自由基 (-OH))促进土壤环境中氯化有机物合成的可能性,我们收集了落叶、腐殖质和土壤(0-20 厘米),并将其用于实验室模拟实验。结果表明,这些无机氧化剂可能会促进氯化有机物的合成,但由于适合的反应环境不同,其影响也不同。降尘对氯化反应最为敏感,这可能是由于降尘中存在大量易溶有机物,而氯化过程则受到降尘中 Cl- 含量的限制。羟基自由基对所评估的三种材料显示出双重效应(产生或降解氯化有机物),这种效应受 -OH 浓度和有机物稳定性的控制,双重效应按垃圾堆落、腐殖质、土壤的顺序排列。由于有机物成分易变,Fe(NO3)3 介导的有机物氯化反应只在垃圾堆中明显,而 H2O2 在产生氯化有机物时引起的过氧化反应只在土壤中明显,这很可能是由于土壤中存在金属,促进了这一过程。这项研究通过验证无机氧化剂可能在自然土壤环境中介导有机物的非生物氯化过程,从而揭示了氯的循环。
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引用次数: 0
Effects of fluid pressure on the occurrence of multi-phase oil and accumulation of light oil and condensate from crude oil cracking: Insights from modified gold tube pyrolysis experiments 流体压力对原油裂解产生多相油以及轻油和凝析油累积的影响:改良金管热解实验的启示
IF 2.6 3区 地球科学 Q2 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2024-09-05 DOI: 10.1016/j.orggeochem.2024.104864
Jun Shi , Yun Li , Wenmin Jiang , Yongqiang Xiong , Hua Wang

An oil with an initial equivalent maturity of 0.74 %Ro, was pyrolyzed in a closed gold tube pyrolysis system with added silica sand and no added water under simulated conditions spanning 0.7 %–2.1 % EasyRo. The internal fluid pressure, ranging from 0 to >150 MPa at individual maturities states of 1.0 %, 1.5 % and 2.1 % EasyRo, was controlled by increasing sample mass and setting external confining pressure (50, 100 and 150 MPa). Results indicate that the increasing fluid pressure initially promoted and then gradually retarded crude oil cracking. The free-radical reaction mechanism (hydrogen radical supply), free space of vessels, and characteristics of pressure medium control the influence of fluid pressure on the chemical reaction process. The decreasing free space of volume-constant vessels and the difference of hydrogen radicals supplied in various thermal maturity stages together gradually reduce the reaction rate of crude oil cracking. Thus, the yields of methane, wet gas, and light and heavy hydrocarbons increase at low fluid pressure ranges and then decrease at high-pressure conditions. Moreover, the physical controls of fluid phase behaviors include the evolution of fluid phase states influencing the increased rates of fluid pressure and fluid pressure influencing the production of multi-phase hydrocarbons. The increase in fluid pressure is faster in the saturated gas–liquid phase than in the unsaturated phase; thus, the phase behaviors induce the yields of product change. The increasing fluid pressure induces the occurrence of multi-phase hydrocarbons and accumulation of light oil and condensate. This study introduces a novel approach to investigate the influence of fluid pressure on reservoir oil cracking, emphasising phase behavior analysis, and shedding light on the evolution of organic matter in deep and ultra-deep strata.

在 0.7 %-2.1 % EasyRo 的模拟条件下,一种初始等效成熟度为 0.74 %Ro 的石油在添加了硅砂、无添加水的封闭式金管热解系统中进行热解。在 1.0 %、1.5 % 和 2.1 % EasyRo 的不同成熟度状态下,内部流体压力从 0 到 150 兆帕不等,通过增加样品质量和设置外部约束压力(50、100 和 150 兆帕)来控制。结果表明,流体压力的增加最初会促进原油裂解,然后逐渐延缓。自由基反应机理(氢基供应)、容器自由空间和压力介质特性控制着流体压力对化学反应过程的影响。恒容容器自由空间的减小和不同热成熟阶段氢自由基供应量的差异共同作用,逐渐降低了原油裂解的反应速率。因此,甲烷、湿气、轻烃和重烃的产量在低流体压力范围内会增加,而在高压条件下会减少。此外,流体相行为的物理控制包括流体相态的演变影响流体压力的增加率,以及流体压力影响多相碳氢化合物的产量。在饱和气液相中,流体压力的增加速度比在不饱和相中快;因此,相行为会引起产品的产量变化。流体压力的增加导致多相碳氢化合物的出现以及轻油和凝析油的积累。本研究引入了一种新方法来研究流体压力对储层石油裂化的影响,强调相行为分析,并揭示了深层和超深层地层中有机物的演化过程。
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引用次数: 0
Geochemistry Articles – July 2024 地球化学文章 - 2024 年 7 月
IF 2.6 3区 地球科学 Q2 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2024-08-28 DOI: 10.1016/j.orggeochem.2024.104853
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引用次数: 0
Hydroxylated GDGTs-0 in marine methane seep environments: A putative indicator for archaeal methanogenesis 海洋甲烷渗漏环境中的羟基化 GDGTs-0:古甲烷生成的推定指标
IF 2.6 3区 地球科学 Q2 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2024-08-28 DOI: 10.1016/j.orggeochem.2024.104862
Hongxiang Guan , Lei Liu , Daniel Birgel , Jörn Peckmann , Dong Feng , Sanzhong Li
Marine methane seeps are environments with a high microbial diversity, but are known for one biogeochemical key process, the sulfate-driven anaerobic oxidation of methane (SD-AOM) performed by anaerobic methane-oxidizing archaea (ANME) and sulfate-reducing bacteria (SRB). SD-AOM is also the dominant process at methane seeps in the South China Sea based on the lipid biomarker inventory of authigenic seep carbonates characterized by crocetane, a high sn2-hydroxyarchaeol over archaeol ratio, low contents of glycerol dibiphytanyl glycerol tetraethers (GDGTs), and δ13Clipid-methane offsets of −52 ± 4‰. Combined with the dominance of aragonite over other carbonate minerals, such pattern suggests high seepage intensity with a predominance of ANME-2/SRB consortia. Interestingly, the studied seep carbonates also yielded some uncommon biomarkers for these consortia, which may derive from methanogenic archaea. Methylotrophic methanogenesis has been shown to be the dominant mode of methanogenesis in seep environments where non-competitive substrates like methanol or trimethylamine are abundant. The presence of methylotrophic methanogens is possibly indicated by high contents (more than 50% of all GDGTs) of hydroxylated GDGTs-0 (OH-GDGT-0 and 2OH-GDGT-0) with extreme 13C-depletion (−128‰ to −116‰); this unique pattern is recognized in only some of the studied seep carbonates, while other carbonates are dominated by typical distributions of ANME-2 lipids, also comprising GDGTs with 0 to 4 rings, but lacking high contents of OH-GDGTs. The overall lack of crenarchaeol, the specific biomarker of planktonic Thaumarchaeota, agrees with the tentative assignment of the highly abundant OH-GDGTs-0 to methanogenic archaea. Such interpretation is necessarily circumstantial considering that the compound and carbon isotope composition of the membranes of ANME and methanogenic archaea is similar. Although production of OH-GDGTs has been previously reported for both planktonic Thaumarchaeota and ANME, OH-GDGT-0 as sole and highly abundant OH-GDGT has only been recognized in one culture of methanogenic archaea. Therefore, the high abundance of 13C-depleted hydroxylated GDGTs-0 compared to only minor contents of regular, ANME-derived GDGTs 1–4 with similar 13C-depletions can possibly be used as an indicator for methylotrophic methanogenesis in seep environments. Future experimental work is needed and should test if 13C-depleted hydroxylated GDGTs-0 are indeed biomarkers of methylotrophic methanogenesis at seeps.
海洋甲烷渗漏是微生物多样性很高的环境,但有一个生物地球化学关键过程为人所知,即由厌氧甲烷氧化古细菌(ANME)和硫酸盐还原菌(SRB)执行的硫酸盐驱动的甲烷厌氧氧化(SD-AOM)过程。根据自生渗漏碳酸盐的脂质生物标志物清单,SD-AOM 也是南海甲烷渗漏的主要过程,其特点是鳄鱼烷、sn2-羟基archaeol 与古醇类的比率高、甘油二二乙烷甘油四醚(GDGTs)含量低、δ13Clipid-甲烷偏移为 -52 ± 4‰。结合文石相对于其他碳酸盐矿物的优势,这种模式表明渗流强度很高,ANME-2/SRB 联合体占主导地位。有趣的是,所研究的渗流碳酸盐还为这些菌群提供了一些不常见的生物标志物,这些标志物可能来自产甲烷古细菌。在甲醇或三甲胺等非竞争性底物含量丰富的渗漏环境中,甲基营养甲烷生成已被证明是甲烷生成的主要模式。羟基化的 GDGTs-0(OH-GDGT-0 和 2OH-GDGT-0)含量高(占所有 GDGTs 的 50%以上),13C-消耗量极高(-128‰ 到 -116‰),这可能表明存在甲养甲烷菌;这种独特的模式仅出现在部分研究的渗出碳酸盐岩中,而其他碳酸盐岩则以典型的 ANME-2 脂类分布为主,也包括 0 至 4 环的 GDGT,但缺乏高含量的 OH-GDGT。由于总体上缺乏浮游厚壳类群(Thaumarchaeota)的特异生物标记--克伦鲨烯醇(crenarchaeol),这与将高含量的羟基-GDGTs-0 暂时归类为甲烷古菌的观点一致。考虑到 ANME 和产甲烷古细菌膜的化合物和碳同位素组成相似,这种解释必然是间接的。虽然浮游潮生菌和 ANME 都有产生 OH-GDGTs 的报道,但 OH-GDGT-0 作为唯一的高丰度 OH-GDGT 只在一种产甲烷古细菌培养物中被发现。因此,13C-耗尽的羟基化 GDGTs-0 的高丰度含量与常规的、ANME 衍生的 GDGTs 1-4 的少量含量(具有相似的 13C-耗尽)相比,可以作为渗漏环境中养甲烷生成的指标。未来的实验工作需要检验 13C 贫化羟基化 GDGTs-0 是否确实是渗漏中养甲烷生成的生物标志物。
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引用次数: 0
Geochemistry Articles – June 2024 地球化学文章 - 2024 年 6 月
IF 2.6 3区 地球科学 Q2 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2024-08-26 DOI: 10.1016/j.orggeochem.2024.104849
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引用次数: 0
A matter of extraction – Extraction yields and ratios of faecal lipid biomarker from archaeological soils using Soxhlet, microwave-assisted and accelerated-solvent extraction 提取问题--使用索氏提取法、微波辅助提取法和加速溶剂提取法提取考古土壤中的粪便脂质生物标志物的产量和比率
IF 2.6 3区 地球科学 Q2 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2024-08-23 DOI: 10.1016/j.orggeochem.2024.104863
Sascha Scherer , Jago Jonathan Birk , Stefanie Klassen , Sabine Fiedler
The performance of Soxhlet (SOX), microwave-assisted (MAE) and accelerated-solvent extraction (ASE) in the analysis of faecal lipid biomarkers (FLB, Δ5-sterols, stanols, stanones) from archaeological soils was investigated to assess effectiveness and reproducibility of the extraction methods. Results from two Anthrosols that were analysed in six replicates show that SOX achieves significantly higher extraction yields for individual substances and steroid sums than MAE, while ASE produces the lowest lipid yields. Regarding the FLB ratios, which are used for sourcing of faeces, the three extraction methods show comparable values with three out of five ratios differing significantly between different soil samples. The reproducibility of extraction yields decreases with SOX > ASE > MAE, as well as for concentrations <100  ng g−1 sediment. Analyses of six different soils indicate a weak influence of soil properties (pH, texture, total organic carbon and cation exchange capacity) on the effectiveness of extraction methods. From our study we conclude that the classical SOX is still the preferred extraction approach when reliably higher FLB yields are of foremost interest or low concentrations are expected, as it is most effective and reproducible. However, considering the drawbacks of SOX (high extraction times and high solvent consumption), MAE and ASE appear to be comparably attractive for extracting FLBs in archaeological contexts. In addition to comparable FLB ratios, MAE and ASE are economically more efficient, as they reach a higher sample throughput and waste lower amounts of extractant.
研究了索氏提取(SOX)、微波辅助提取(MAE)和加速溶剂萃取(ASE)在分析考古土壤中粪便脂质生物标志物(FLB、Δ5-甾醇、甾醇、甾酮)方面的性能,以评估提取方法的有效性和可重复性。对两种炭溶胶进行六次重复分析的结果表明,SOX 的单个物质和类固醇总萃取率明显高于 MAE,而 ASE 的脂质萃取率最低。至于用于确定粪便来源的 FLB 比值,三种萃取方法的数值相当,不同土壤样本之间的五个比值中有三个存在显著差异。提取率的重现性随着 SOX、ASE、MAE 以及浓度为 100 纳克/克-1 的沉积物而降低。对六种不同土壤的分析表明,土壤性质(pH 值、质地、总有机碳和阳离子交换容量)对萃取方法的有效性影响较小。根据我们的研究,我们得出的结论是,当对可靠的较高 FLB 产量最感兴趣或预期浓度较低时,传统的 SOX 仍是首选的萃取方法,因为它最有效且可重复。不过,考虑到 SOX 的缺点(萃取时间长、溶剂消耗量大),MAE 和 ASE 对于在考古环境中萃取 FLB 似乎具有相当的吸引力。除了具有可比的FLB比率外,MAE和ASE还具有更高的经济效益,因为它们可以达到更高的样品处理量,浪费更少的萃取剂。
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引用次数: 0
Interaction between peptide and solid lignin suggest mechanisms of abiotic covalent bond formation 多肽与固体木质素之间的相互作用表明了非生物共价键的形成机制
IF 2.6 3区 地球科学 Q2 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2024-08-23 DOI: 10.1016/j.orggeochem.2024.104861
João Vitor dos Santos , Amanda Koenig , Patrick G. Hatcher
The mechanisms behind the formation of soil organic matter (SOM) and associated nitrogen immobilization remain partially elusive, while ongoing research continues to shed light on carbon and nitrogen sequestration in the environment. Studies show that quinone-like structures within alkali-soluble humic extracts of SOM can bond covalently with nitrogen-containing molecules derived from proteinaceous organic matter. However, direct molecular evidence for this chemical bonding with lignin in the solid form and non-solvent-extracted SOM is lacking. Using gel-state 1H-15N heteronuclear single quantum coherence (HSQC) high-resolution magic angle spinning (HRMAS) nuclear magnetic resonance (NMR) spectroscopy, we demonstrate that a 15N-labeled peptide (glycine-glycine-glycine-arginine, GGGR), can covalently bind to solid, untreated, brown rotted wood as well as 1,2-naphthoquinone, a quinone-model molecule typically found in degraded lignin. The new peaks in both reactions represent a change in the environment surrounding the N-functional groups. Interaction of the 15N-labeled peptide with the model quinone produced NMR cross peaks that are similar to those of the solid lignin. This suggests that the quinone-like structures are the most likely functional groups to form covalent bonds with peptides in the degraded lignin. Both Michael addition and Schiff base formation is proposed when the peptide GGGR interacts with white oak lignin and 1,2-naphthoquinone. These processes are of considerable importance to N incorporation into SOM and offer insights into how proteinaceous molecules could potentially be preserved and sequestered through covalent bond formation.
土壤有机物质(SOM)的形成和相关的氮固定机制仍有部分令人难以捉摸,而正在进行的研究则继续揭示环境中的碳和氮固存问题。研究表明,SOM 的碱溶性腐殖质萃取物中的类醌结构可与蛋白质有机物中的含氮分子共价结合。然而,这种化学键与固态木质素和非溶剂萃取的 SOM 的直接分子证据还很缺乏。利用凝胶态 1H-15N 异核单量子相干(HSQC)高分辨率魔角旋转(HRMAS)核磁共振(NMR)光谱、我们证明,15N 标记的多肽(甘氨酸-甘氨酸-甘氨酸-精氨酸,GGGR)能与未经处理的棕色固体腐木以及 1,2-萘醌(降解木质素中常见的醌类分子)共价结合。这两种反应中出现的新峰值代表了 N-官能团周围环境的变化。15N 标记的肽与模型醌相互作用产生的 NMR 交叉峰与固体木质素的交叉峰相似。这表明类醌结构是最有可能与降解木质素中的肽形成共价键的官能团。当肽 GGGR 与白橡木木质素和 1,2-萘醌相互作用时,可能会形成迈克尔加成和希夫碱。这些过程对于将氮掺入 SOM 中具有相当重要的意义,并有助于深入了解如何通过共价键的形成来保存和封存蛋白质分子。
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引用次数: 0
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Organic Geochemistry
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