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Possible contribution to data-driven primate research: Comment on “Kinematic coding: Measuring information in naturalistic behaviour” by Becchio, Pullar, Scaliti, and Panzeri 对数据驱动的灵长类动物研究的可能贡献:对Becchio, Pullar, Scaliti和Panzeri的“运动学编码:测量自然行为中的信息”的评论
IF 13.7 1区 生物学 Q1 BIOLOGY Pub Date : 2025-06-02 DOI: 10.1016/j.plrev.2025.05.012
Koki Mimura , Ken Nakae , Kenji Doya
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引用次数: 0
Simulating social dynamics with artificial intelligence 用人工智能模拟社会动态
IF 13.7 1区 生物学 Q1 BIOLOGY Pub Date : 2025-06-02 DOI: 10.1016/j.plrev.2025.05.011
Francisco A. Rodrigues , Paula Giovanna Rodrigues
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引用次数: 0
Corrigendum to “Connecting Brain and Mind through Temporo-spatial Dynamics: Towards a Theory of Common Currency”, [Physics of Life Reviews, 52 (2025) 29–43] “通过时空动力学连接大脑和心灵:走向共同货币理论”的勘误表,[生命物理学评论,52 (2025)29-43]
IF 13.7 1区 生物学 Q1 BIOLOGY Pub Date : 2025-05-28 DOI: 10.1016/j.plrev.2025.05.009
Georg Northoff , Andrea Buccellato , Federico Zilio
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引用次数: 0
For infants, actions speak louder than words Comment on “Kinematic coding: Measuring information in naturalistic behaviour” by Cristina Becchio, Kiri Pullar, Eugenio Scaliti, Stefano Panzeri 评论Cristina Becchio, Kiri Pullar, Eugenio Scaliti, Stefano Panzeri的“运动学编码:测量自然行为中的信息”
IF 13.7 1区 生物学 Q1 BIOLOGY Pub Date : 2025-05-22 DOI: 10.1016/j.plrev.2025.05.010
Sabine Hunnius, Marlene Meyer
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引用次数: 0
Comment on “Kinematic coding: Measuring information in naturalistic behavior” by Cristina Becchio, Kiri Pullar, Eugenio Scaliti, Stefano Panzeri 评Cristina Becchio, Kiri Pullar, Eugenio Scaliti, Stefano Panzeri的《运动学编码:测量自然行为中的信息
IF 13.7 1区 生物学 Q1 BIOLOGY Pub Date : 2025-05-19 DOI: 10.1016/j.plrev.2025.05.005
Mario di Bernardo
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引用次数: 0
Encoding of movement style: From kinematics to neurons 运动风格的编码:从运动学到神经元
IF 13.7 1区 生物学 Q1 BIOLOGY Pub Date : 2025-05-19 DOI: 10.1016/j.plrev.2025.05.004
Martin A. Giese
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引用次数: 0
I gotta feeling: Beyond major and minor dichotomy in music emotions. Comment on “The major-minor mode dichotomy in music perception” by Giulio Carraturo, Victor Pando-Naude, Marco Costa, Peter Vuust, Leonardo Bonetti, Elvira Brattico 我感觉:超越音乐情感的大调和小调二分法。评析朱利奥·卡拉图罗、维克多·潘多-诺德、马尔科·科斯塔、彼得·武乌斯特、莱昂纳多·博内蒂、埃尔维拉·布拉提科的“音乐感知中的大调-小调二分法”
IF 13.7 1区 生物学 Q1 BIOLOGY Pub Date : 2025-05-17 DOI: 10.1016/j.plrev.2025.05.006
Laura Ferreri , Barbara Tillmann
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引用次数: 0
Contextualizing kinematic coding in naturalistic scenarios: Comment on “Kinematic coding: Measuring information in naturalistic behaviour” by Becchio, Pullar, Scaliti, and Panzeri 在自然情境中情境化运动编码:对Becchio, Pullar, Scaliti和Panzeri的“运动编码:在自然行为中测量信息”的评论
IF 13.7 1区 生物学 Q1 BIOLOGY Pub Date : 2025-05-17 DOI: 10.1016/j.plrev.2025.05.003
Cosimo Urgesi , Alessandra Finisguerra
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引用次数: 0
Active inference and cognitive control: Balancing deliberation and habits through precision optimization 主动推理与认知控制:通过精确优化平衡深思与习惯
IF 13.7 1区 生物学 Q1 BIOLOGY Pub Date : 2025-05-16 DOI: 10.1016/j.plrev.2025.05.008
Riccardo Proietti , Thomas Parr , Alessia Tessari , Karl Friston , Giovanni Pezzulo
We advance a novel formulation of cognitive control within the active inference framework. The theory proposes that cognitive control amounts to optimising a precision parameter, which acts as a control signal and balances the contributions of deliberative and habitual components of action selection. To illustrate the theory, we simulate a driving scenario in which the driver follows a well-known route, but encounters unexpected challenges. Our simulations show that a standard active inference model can form adaptive habits; i.e., can pass from deliberative to habitual control when the context is stable, but generally fails to revert to deliberative control, when the context changes. To address this failure of context-sensitivity, we introduce a novel type of hierarchical active inference, in which a lower level is responsible for behavioural control and the higher (or meta-cognitive) level observes the belief updating of the lower level below and is responsible for cognitive control. Crucially, the meta-cognitive level can both form habits and suspend them, by controlling the (precision) parameter that prioritizes deliberative choices at the behavioural level. Furthermore, we show that several processes linked to cognitive control — such as surprise detection, cognitive conflict monitoring, control signal regulation and specification, the simulation of future outcomes and the assessment of the costs of control and mental effort — stem coherently from the free energy minimization scheme that underpins active inference. Finally, we discuss the putative neurobiology of cognitive control by simulating brain dynamics in the mesolimbic and mesocortical pathways of the dopamine system, the dorsal anterior cingulate cortex and the locus coeruleus.
我们在主动推理框架内提出了一种新的认知控制公式。该理论提出,认知控制相当于优化一个精确参数,该参数作为控制信号,平衡行动选择中深思熟虑和习惯成分的贡献。为了说明这一理论,我们模拟了一个驾驶场景,在这个场景中,司机沿着一条众所周知的路线行驶,但遇到了意想不到的挑战。仿真结果表明,标准的主动推理模型可以形成自适应习惯;即,当语境稳定时,可以从协商控制过渡到习惯控制,但当语境发生变化时,通常不能恢复到协商控制。为了解决这种上下文敏感性的失败,我们引入了一种新型的分层主动推理,其中较低的层次负责行为控制,较高的(或元认知)层次观察较低层次的信念更新并负责认知控制。至关重要的是,元认知层面既可以形成习惯,也可以暂停习惯,通过控制(精度)参数,优先考虑行为层面的审慎选择。此外,我们还表明,与认知控制相关的几个过程——如惊喜检测、认知冲突监测、控制信号调节和规范、未来结果的模拟以及控制和心理努力成本的评估——都源于支撑主动推理的自由能量最小化方案。最后,我们通过模拟多巴胺系统、背前扣带皮层和蓝斑的中脑边缘和中脑皮层通路的大脑动力学,讨论了认知控制的假定神经生物学。
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引用次数: 0
High-order interaction modeling of tumor-microenvironment crosstalk for tumor growth 肿瘤生长中肿瘤-微环境串扰的高阶相互作用模型
IF 13.7 1区 生物学 Q1 BIOLOGY Pub Date : 2025-05-16 DOI: 10.1016/j.plrev.2025.05.007
Jincan Che , Yu Wang , Li Feng , Claudia Gragnoli , Christopher Griffin , Rongling Wu
Signaling interactions between cancer cells and nonmalignant cells in the tumor microenvironment (TME) are believed to influence tumor progression and drug resistance. However, the genomic machineries mediating such an influence remain elusive, making it difficult to determine therapeutic targets on the tumor and its microenvironment. Here, we argue that a computational model, derived from the integration of evolutionary game theory and ecosystem theory through allometric scaling law, can chart the genomic atlas of high-order interaction networks involving tumor cells, TME, and tumor mass. We assess the application of this model to identify the causal influence of gene-induced tumor-TME crosstalk on tumor growth. The findings demonstrate that cooperation and competition between tumor cells and their infiltrating microenvironment promote or inhibit tumor growth in diverse ways. We identify specific genes that govern this promotion or inhibition, which can be used as genetic targets to alter tumor growth. This model opens up a new avenue to precisely infer the genomic underpinnings of tumor-TME interactions and their impact on tumor progression from any omics data.
肿瘤微环境(TME)中癌细胞和非恶性细胞之间的信号相互作用被认为影响肿瘤的进展和耐药性。然而,介导这种影响的基因组机制仍然难以捉摸,因此难以确定肿瘤及其微环境的治疗靶点。在此,我们认为通过异速缩放定律整合进化博弈论和生态系统理论的计算模型可以绘制涉及肿瘤细胞、TME和肿瘤块的高阶相互作用网络的基因组图谱。我们评估了该模型在确定基因诱导肿瘤- tme串扰对肿瘤生长的因果影响方面的应用。研究结果表明,肿瘤细胞及其浸润微环境之间的合作和竞争以多种方式促进或抑制肿瘤的生长。我们确定了控制这种促进或抑制的特定基因,这些基因可以用作改变肿瘤生长的遗传靶点。该模型为从任何组学数据中精确推断肿瘤- tme相互作用的基因组基础及其对肿瘤进展的影响开辟了一条新的途径。
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引用次数: 0
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Physics of Life Reviews
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