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Bone tissue engineering at a glance 骨组织工程一览
IF 2.3 Q4 ENGINEERING, BIOMEDICAL Pub Date : 2022-01-01 DOI: 10.3934/bioeng.2022002
Vincent Deplaigne, G. Rochefort
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引用次数: 3
Gas-Net: A deep neural network for gastric tumor semantic segmentation Gas-Net:用于胃肿瘤语义分割的深度神经网络
IF 2.3 Q4 ENGINEERING, BIOMEDICAL Pub Date : 2022-01-01 DOI: 10.3934/bioeng.2022018
Lamia Fatiha Kazi Tani, Mohammed Yassine Kazi Tani, B. Kadri
Currently, the gastric cancer is the source of the high mortality rate where it is diagnoses from the stomach and esophagus tests. To this end, the whole of studies in the analysis of cancer are built on AI (artificial intelligence) to develop the analysis accuracy and decrease the danger of death. Mostly, deep learning methods in images processing has made remarkable advancement. In this paper, we present a method for detection, recognition and segmentation of gastric cancer in endoscopic images. To this end, we propose a deep learning method named GAS-Net to detect and recognize gastric cancer from endoscopic images. Our method comprises at the beginning a preprocessing step for images to make all images in the same standard. After that, the GAS-Net method is based an entire architecture to form the network. A union between two loss functions is applied in order to adjust the pixel distribution of normal/abnormal areas. GAS-Net achieved excellent results in recognizing lesions on two datasets annotated by a team of expert from several disciplines (Dataset1, is a dataset of stomach cancer images of anonymous patients that was approved from a private medical-hospital clinic, Dataset2, is a publicly available and open dataset named HyperKvasir ‎[1]). The final results were hopeful and proved the efficiency of the proposal. Moreover, the accuracy of classification in the test phase was 94.06%. This proposal offers a specific mode to detect, recognize and classify gastric tumors.
目前,胃癌是通过胃和食道检查诊断出的高死亡率的来源。为此,整个癌症分析的研究都建立在AI(人工智能)的基础上,以提高分析的准确性,降低死亡的危险。大多数情况下,深度学习方法在图像处理方面取得了显著的进步。本文提出了一种内镜下胃癌图像的检测、识别和分割方法。为此,我们提出了一种名为GAS-Net的深度学习方法来从内镜图像中检测和识别胃癌。我们的方法包括在开始时对图像进行预处理,使所有图像具有相同的标准。之后,GAS-Net方法基于一个完整的体系结构来形成网络。利用两个损失函数的联合来调整正常/异常区域的像素分布。GAS-Net在由来自多个学科的专家团队注释的两个数据集上取得了出色的病变识别结果(Dataset1,是由一家私立医疗医院诊所批准的匿名患者的胃癌图像数据集;Dataset2,是一个公开可用的开放数据集,名为HyperKvasir[1])。最后的结果是有希望的,并证明了该建议的有效性。测试阶段的分类准确率为94.06%。该方案为胃肿瘤的检测、识别和分类提供了一种特定的模式。
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引用次数: 1
Microtissues in cancer modeling 癌症模型中的微组织
IF 2.3 Q4 ENGINEERING, BIOMEDICAL Pub Date : 2022-01-01 DOI: 10.3934/bioeng.2022021
C. Poignard
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引用次数: 0
Promising probiotics for the treatment of nephrotoxicity induced during immune-checkpoint therapy against cancers 有希望的益生菌治疗癌症免疫检查点治疗期间引起的肾毒性
IF 2.3 Q4 ENGINEERING, BIOMEDICAL Pub Date : 2022-01-01 DOI: 10.3934/bioeng.2022019
Sayuri Yoshikawa, Kurumi Taniguchi, Haruka Sawamura, Yuka Ikeda, Ai Tsuji, Satoru Matsuda
The immune-related adverse events resulting from the therapy of immune checkpoint inhibitors could cause kidney injury. Inflammatory reprogramming of regulatory T helper (Treg) cells or type 17 T helper (Th17) cells might be involved in the pathogenesis of nephropathy. Accumulating evidence confirms a connection between the diversity of gut microbiota and kidney diseases, suggesting that successful modification of gut microbiota could attenuate kidney injury. In other words, certain gut microbiota could contribute to the protection of kidneys via the gut-kidney axis. It has been shown that the dysbiosis of gut microbiota might affect the gut-kidney axis, leading to nephrotoxicity. On the contrary, altered levels of D-amino acids, ROS, and SCFAs through the adjustment of gut microbiota might be relevant to the reduction of nephrotoxicity. Here, we have discussed and suggested the beneficial roles of gut microbiota in the prevention of the kidney injury induced during immune-checkpoint therapy.
免疫检查点抑制剂治疗引起的免疫相关不良事件可引起肾损伤。调节性T辅助细胞(Treg)或17型T辅助细胞(Th17)的炎症重编程可能参与了肾病的发病机制。越来越多的证据证实了肠道微生物群多样性与肾脏疾病之间的联系,表明肠道微生物群的成功修饰可以减轻肾脏损伤。换句话说,某些肠道微生物群可以通过肠肾轴对肾脏进行保护。研究表明,肠道菌群失调可能影响肠肾轴,导致肾毒性。相反,通过调节肠道菌群改变d -氨基酸、ROS和SCFAs的水平可能与肾毒性的降低有关。在这里,我们讨论并提出了肠道微生物群在预防免疫检查点治疗期间引起的肾损伤中的有益作用。
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引用次数: 0
Fast delivery of melatonin from electrospun blend polyvinyl alcohol and polyethylene oxide (PVA/PEO) fibers 从静电纺混合聚乙烯醇和聚氧化物(PVA/PEO)纤维中快速输送褪黑素
IF 2.3 Q4 ENGINEERING, BIOMEDICAL Pub Date : 2022-01-01 DOI: 10.3934/bioeng.2022013
Rachel Emerine, S. Chou
Water-soluble polymers possess great advantages in current drug delivery systems, such as fast delivery through polymer matrix dissolution as well as promoting solid dispersion of poorly water-soluble drugs. In this work, water-soluble polyvinyl alcohol (PVA) and polyethylene oxide (PEO) were blended (50/50) to electrospin with and without the incorporation of a model drug, melatonin (MLT), at various blend polymer concentrations. Results suggested that increasing blend PVA/PEO solution concentrations, up to 7 wt%, promoted the formation of smooth and defect-free drug-incorporating fibers with an average fiber diameter ranged from 300 to 700 nm. Mechanical properties of the blank and MLT-loaded PVA/PEO fibers showed dependence on fiber morphologies and fiber mat structures, due to polymer concentrations for electrospinning. Furthermore, the surface wettability of the blend PVA/PEO fibers were investigated and further correlated with the MLT release profile of the fibers. Results suggested that fiber mats with a more well-defined fiber structure promoted a linear release behavior within 10 minutes in vitro. These drug-incorporated fibers were compatible to human umbilical vein endothelial cells (HUVECs) up to 24 hours. In general, this work demonstrated the structure-property correlations of electrospun PVA/PEO fibers and their potential biomedical applications in fast delivery of small molecule drugs.
水溶性聚合物在目前的给药系统中具有很大的优势,可以通过聚合物基质溶解快速给药,也可以促进水溶性差药物的固体分散。在这项工作中,水溶性聚乙烯醇(PVA)和聚氧化物(PEO)以50/50的比例混合,在不同的混合聚合物浓度下,在有和没有模型药物褪黑激素(MLT)的情况下进行电旋。结果表明,当混合PVA/PEO溶液浓度达到7 wt%时,可促进形成光滑、无缺陷的含药纤维,平均纤维直径在300 ~ 700 nm之间。由于静电纺丝时聚合物浓度的不同,PVA/PEO毛坯纤维和mlt负载PVA/PEO纤维的力学性能与纤维形态和纤维垫结构有关。此外,研究了PVA/PEO共混纤维的表面润湿性,并进一步与纤维的MLT释放曲线相关联。结果表明,纤维结构更明确的纤维垫促进了体外10分钟内的线性释放行为。这些掺入药物的纤维与人脐静脉内皮细胞(HUVECs)兼容长达24小时。总的来说,这项工作证明了静电纺PVA/PEO纤维的结构-性能相关性及其在小分子药物快速递送方面的潜在生物医学应用。
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引用次数: 4
Coupled effects of channels and synaptic dynamics in stochastic modelling of healthy and Parkinson's-disease-affected brains 通道和突触动力学在健康和帕金森病影响的大脑随机建模中的耦合效应
IF 2.3 Q4 ENGINEERING, BIOMEDICAL Pub Date : 2021-12-24 DOI: 10.3934/bioeng.2022015
T. Thieu, R. Melnik
Our brain is a complex information processing network in which the nervous system receives information from the environment to quickly react to incoming events or learns from experience to sharp our memory. In the nervous system, the brain states translate collective activities of neurons interconnected via synaptic connections. In this paper, we study coupled effects of channels and synaptic dynamics under the stochastic influence of healthy brain cells with applications to Parkinson's disease (PD). In particular, we investigate the effects of random inputs in a subthalamic nucleus (STN) cell membrane potential model. The STN bursting phenomena and parkinsonian hypokinetic motor symptoms are closely connected, as electrical and chemical maneuvers modulating STN bursts are sufficient to ameliorate or mimic parkinsonian motor deficits. Deep brain stimulation (DBS) of the STN is an important surgical technique used in the treatment to improve PD symptoms. Our numerical results show that the random inputs strongly affect the spiking activities of the STN neuron not only in the case of healthy cells but also in the case of PD cells in the presence of DBS treatment. Specifically, the existence of a random refractory period together with random input current in the system may substantially influence an increased irregularity of spike trains of the output neurons.
我们的大脑是一个复杂的信息处理网络,神经系统从环境中接收信息,对传入的事件做出快速反应,或者从经验中学习,以增强我们的记忆。在神经系统中,大脑状态通过突触连接来翻译神经元的集体活动。本文研究了健康脑细胞随机影响下通道和突触动力学的耦合效应,并将其应用于帕金森病(PD)。特别地,我们研究了随机输入在丘脑底核(STN)细胞膜电位模型中的作用。STN爆发现象与帕金森病运动障碍症状密切相关,因为调节STN爆发的电和化学操作足以改善或模拟帕金森病的运动缺陷。STN深部脑刺激(DBS)是治疗PD症状的重要外科技术。我们的数值结果表明,随机输入强烈影响STN神经元的尖峰活动,不仅在健康细胞的情况下,而且在PD细胞存在DBS治疗的情况下。具体来说,系统中随机不应期和随机输入电流的存在可能会极大地影响输出神经元尖峰序列不规则性的增加。
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引用次数: 1
Dilute acid hydrolysis of wastes of fruits from Amazon for ethanol production 亚马逊果渣的稀酸水解制备乙醇
IF 2.3 Q4 ENGINEERING, BIOMEDICAL Pub Date : 2021-01-01 DOI: 10.3934/bioeng.2021019
F. Fernandes, A. Farias, L. Carneiro, R. Santos, D. Torres, J. Silva, João Souza, É. Souza

This study carried out the screening of wastes from Amazon plants to produce hydrolysates with a high monosaccharides content for ethanol production. Initially, we hydrolyzed (diluted acid) Amazon wastes (peel from the fruit of Astrocaryum aculeatum Meyer, peel from the fruit of Bactris gasipaes Kunth, straw obtained from endocarp of the fruit of Euterpe oleracea Mart., peel from the fruit of Theobroma grandiflorum Schumann and peel from the root of Manihot esculenta Crant) to obtain hydrolysates with the high content of fermentable sugars. Then, we investigated by 23 factorial design the influence of the factors: a) hydrolysis time (min); b) H2SO4-to-waste ratio (g/g) and c) solid-to-liquid ratio (g/mL) in the variables reducing sugars and furans. The hydrolysis of the peel of the fruit of Bactris gasipaes resulted in the highest concentration of reducing sugars (23.7 g/L). After detoxification and concentration process, the Bactris gasipaes hydrolysate results in 96.7 g/L of reducing sugars largely fermentable (90%) by Saccharomyces cerevisiae PE-2. The experimental design demonstrated that the factors H2SO4-to-waste ratio (g/g) and solid-to-liquid ratio (g/mL) were the most significant affecting the final content of reducing sugars and furans in the hydrolysate of the peel of Bactris gasipaes. Hydrolysis time of 4.4 min, H2SO4-to-waste ratio of 0.63 g/g, and the solid-to-liquid ratio of 0.17 g/mL resulted in the concentration of reducing sugars of 49 g/L. This study shows the potential of peels from the fruit of Bactris gasipaes to produce ethanol.

本研究对亚马逊河流域植物的废弃物进行筛选,以生产单糖含量高的水解物用于乙醇生产。最初,我们水解(稀释酸)亚马逊废弃物(Astrocaryum aculeatum Meyer果实的果皮、Bactris gasipaes Kunth果实的果皮、Euterpe oleracea Mart果实内果皮获得的秸秆)。从桔梗(Theobroma grandflorum Schumann)的果实和manhot esculenta grant的根部剥皮,以获得具有高含量可发酵糖的水解产物。然后,采用23因子设计考察了水解时间(min);b)还原糖和呋喃变量中h2so4 -废物比(g/g)和c)固液比(g/mL)。果皮水解得到的还原糖浓度最高(23.7 g/L)。经过解毒和浓缩处理,气态杆菌水解产物的还原糖含量为96.7 g/L,大部分(90%)可被酿酒酵母PE-2发酵。实验设计表明,h2so4 -废物比(g/g)和固液比(g/mL)是影响气态杆菌果皮水解产物中还原糖和呋喃最终含量的最显著因素。当水解时间为4.4 min, h2so4 -废物比为0.63 g/g,料液比为0.17 g/mL时,还原糖浓度为49 g/L。这项研究显示了气体杆菌果实的果皮生产乙醇的潜力。
{"title":"Dilute acid hydrolysis of wastes of fruits from Amazon for ethanol production","authors":"F. Fernandes, A. Farias, L. Carneiro, R. Santos, D. Torres, J. Silva, João Souza, É. Souza","doi":"10.3934/bioeng.2021019","DOIUrl":"https://doi.org/10.3934/bioeng.2021019","url":null,"abstract":"<abstract> <p>This study carried out the screening of wastes from Amazon plants to produce hydrolysates with a high monosaccharides content for ethanol production. Initially, we hydrolyzed (diluted acid) Amazon wastes (peel from the fruit of <italic>Astrocaryum aculeatum</italic> Meyer, peel from the fruit of <italic>Bactris gasipaes</italic> Kunth, straw obtained from endocarp of the fruit of <italic>Euterpe oleracea</italic> Mart., peel from the fruit of <italic>Theobroma grandiflorum</italic> Schumann and peel from the root of <italic>Manihot esculenta</italic> Crant) to obtain hydrolysates with the high content of fermentable sugars. Then, we investigated by 2<sup>3</sup> factorial design the influence of the factors: a) hydrolysis time (min); b) H<sub>2</sub>SO<sub>4</sub>-to-waste ratio (g/g) and c) solid-to-liquid ratio (g/mL) in the variables reducing sugars and furans. The hydrolysis of the peel of the fruit of <italic>Bactris gasipaes</italic> resulted in the highest concentration of reducing sugars (23.7 g/L). After detoxification and concentration process, the <italic>Bactris gasipaes</italic> hydrolysate results in 96.7 g/L of reducing sugars largely fermentable (90%) by <italic>Saccharomyces cerevisiae</italic> PE-2. The experimental design demonstrated that the factors H<sub>2</sub>SO<sub>4</sub>-to-waste ratio (g/g) and solid-to-liquid ratio (g/mL) were the most significant affecting the final content of reducing sugars and furans in the hydrolysate of the peel of <italic>Bactris gasipaes</italic>. Hydrolysis time of 4.4 min, H<sub>2</sub>SO<sub>4</sub>-to-waste ratio of 0.63 g/g, and the solid-to-liquid ratio of 0.17 g/mL resulted in the concentration of reducing sugars of 49 g/L. This study shows the potential of peels from the fruit of <italic>Bactris gasipaes</italic> to produce ethanol.</p> </abstract>","PeriodicalId":45029,"journal":{"name":"AIMS Bioengineering","volume":"33 1","pages":""},"PeriodicalIF":2.3,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"76222948","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
Bioengineering applied to Covid-19 pandemic: from bench to bedside 将生物工程应用于 Covid-19 大流行病:从工作台到床边
IF 2.3 Q4 ENGINEERING, BIOMEDICAL Pub Date : 2021-01-01 DOI: 10.3934/bioeng.2021002
R. Buchaim
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引用次数: 1
Vinegar production from Theobroma grandiflorum SCHUM (cupuassu) 桔梗香醋的生产
IF 2.3 Q4 ENGINEERING, BIOMEDICAL Pub Date : 2021-01-01 DOI: 10.3934/bioeng.2021022
A. Pinheiro, Augusto Bücker, A. C. Cortez, J. V. D. de Souza, Érica Simplício de Souza
The tropical fruit cupuassu comes from Theobroma grandiflorum (SCHUM), a close relative of cocoa. Cupuassu has a rich yet delicate flavour profile with notes of chocolate, pineapple, passion fruit and other fruits. Here, we produced a cupuassu-fruit wine using a Saccharomyces cerevisiae inoculum (and univariate analysis to determine conditions for optimum ethanol production) and then fermented this wine to produce a delicate and unique cupuassu vinegar using acid-acid bacteria. The cupuassu wine was produced by fermentation of juice chaptalized with sucrose, with a final ethanol concentration of 10% (v/v). Acetic-acid fermentations were carried out in both a bubble-column reactor and a mechanically non-aerated reactor (high-surface reactor), producing final concentrations of 4.5 and 3.3% (w/v) acetic acid, respectively. The ethanol- and acetic-acid yields obtained were comparable to those of other fruit wines and fruit vinegars. The cupuassu vinegar retained the rich flavor profile of the cupuassu. We believe that the production of flavorsome products from local plants can have benefits for conservation by promoting ecologically sustainable agriculture and may contribute to cultural identity of Amazon people.
热带水果cupuassu来自Theobroma grandflorum (SCHUM),是可可的近亲。库普阿苏有着丰富而精致的巧克力、菠萝、百香果和其他水果的味道。在这里,我们使用酿酒酵母接种(并进行单变量分析以确定最佳乙醇生产条件)生产了一种库普阿苏果酒,然后使用酸菌对其进行发酵,生产出一种精致而独特的库普阿苏醋。以甘蔗汁为原料,以乙醇浓度为10% (v/v),以蔗糖为原料进行发酵,制备了库瓜苏酒。在鼓泡塔反应器和机械无曝气反应器(高表面反应器)中进行醋酸发酵,最终乙酸浓度分别为4.5和3.3% (w/v)。所得乙醇和乙酸的产率与其他果酒和果醋相当。库普阿苏醋保留了库普阿苏丰富的风味。我们认为,从当地植物中生产美味的产品可以通过促进生态可持续农业而有益于保护,并可能有助于亚马逊人的文化认同。
{"title":"Vinegar production from Theobroma grandiflorum SCHUM (cupuassu)","authors":"A. Pinheiro, Augusto Bücker, A. C. Cortez, J. V. D. de Souza, Érica Simplício de Souza","doi":"10.3934/bioeng.2021022","DOIUrl":"https://doi.org/10.3934/bioeng.2021022","url":null,"abstract":"The tropical fruit cupuassu comes from Theobroma grandiflorum (SCHUM), a close relative of cocoa. Cupuassu has a rich yet delicate flavour profile with notes of chocolate, pineapple, passion fruit and other fruits. Here, we produced a cupuassu-fruit wine using a Saccharomyces cerevisiae inoculum (and univariate analysis to determine conditions for optimum ethanol production) and then fermented this wine to produce a delicate and unique cupuassu vinegar using acid-acid bacteria. The cupuassu wine was produced by fermentation of juice chaptalized with sucrose, with a final ethanol concentration of 10% (v/v). Acetic-acid fermentations were carried out in both a bubble-column reactor and a mechanically non-aerated reactor (high-surface reactor), producing final concentrations of 4.5 and 3.3% (w/v) acetic acid, respectively. The ethanol- and acetic-acid yields obtained were comparable to those of other fruit wines and fruit vinegars. The cupuassu vinegar retained the rich flavor profile of the cupuassu. We believe that the production of flavorsome products from local plants can have benefits for conservation by promoting ecologically sustainable agriculture and may contribute to cultural identity of Amazon people.","PeriodicalId":45029,"journal":{"name":"AIMS Bioengineering","volume":"1 1","pages":""},"PeriodicalIF":2.3,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"82628641","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Implications of Gut-Brain axis in the pathogenesis of Psychiatric disorders 肠脑轴在精神疾病发病机制中的意义
IF 2.3 Q4 ENGINEERING, BIOMEDICAL Pub Date : 2021-01-01 DOI: 10.3934/bioeng.2021021
Kurumi Taniguchi, Yuka Ikeda, Nozomi Nagase, Ai Tsuji, Y. Kitagishi, Satoru Matsuda
Psychiatric disorders may extremely impair the quality of life with patients and are important reasons of social disability. Several data have shown that psychiatric disorders are associated with an altered composition of gut microbiota. Dietary intake could determine the microbiota, which contribute to produce various metabolites of fermentation such as short chain fatty acids. Some of the metabolites could result in epigenetic alterations leading to the disease susceptibility. Epigenetic dysfunction is in fact implicated in various psychiatric and neurologic disorders. For example, it has been shown that neuroepigenetic dysregulation occurs in psychiatric disorders including schizophrenia. Several studies have demonstrated that the intestinal microbiome may influence the function of central nervous system. Furthermore, it has been proved that the alterations in the gut microbiota-composition might affect in the bidirectional communication between gut and brain. Similarly, evidences demonstrating the association between psychiatric disorders and the gut microbiota have come from preclinical studies. It is clear that an intricate symbiotic relationship might exist between host and microbe, although the practical significance of the gut microbiota has not yet to be determined. In this review, we have summarized the function of gut microbiota in main psychiatric disorders with respect to the mental health. In addition, we would like to discuss the potential mechanisms of the disorders for the practical diagnosis and future treatment by using bioengineering of microbiota and their metabolites.
精神疾病严重影响患者的生活质量,是社会残疾的重要原因。一些数据表明,精神疾病与肠道微生物群组成的改变有关。饲料的摄取量可以决定微生物群,这些微生物群有助于产生各种发酵代谢产物,如短链脂肪酸。一些代谢物可能导致表观遗传改变,从而导致疾病易感性。表观遗传功能障碍实际上与各种精神和神经疾病有关。例如,已经证明神经表观遗传失调发生在精神疾病中,包括精神分裂症。一些研究表明,肠道微生物群可能影响中枢神经系统的功能。此外,已经证明肠道微生物群组成的改变可能影响肠道和大脑之间的双向通信。同样,证明精神疾病和肠道微生物群之间存在关联的证据也来自临床前研究。很明显,宿主和微生物之间可能存在复杂的共生关系,尽管肠道微生物群的实际意义尚未确定。本文就肠道菌群在主要精神疾病中的作用及其与心理健康的关系进行综述。此外,我们希望通过微生物群及其代谢物的生物工程技术来讨论疾病的潜在机制,以便于实际诊断和未来的治疗。
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引用次数: 7
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