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Multiparameter imaging reveals clinically relevant cancer cell-stroma interaction dynamics in head and neck cancer 多参数成像揭示头颈癌中与临床相关的癌细胞-基质相互作用动态
IF 64.5 1区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-10-28 DOI: 10.1016/j.cell.2024.09.046
Karolina Punovuori, Fabien Bertillot, Yekaterina A. Miroshnikova, Mirjam I. Binner, Satu-Marja Myllymäki, Gautier Follain, Kai Kruse, Johannes Routila, Teemu Huusko, Teijo Pellinen, Jaana Hagström, Noemi Kedei, Sami Ventelä, Antti Mäkitie, Johanna Ivaska, Sara A. Wickström
Epithelial tumors are characterized by abundant inter- and intra-tumor heterogeneity, which complicates diagnostics and treatment. The contribution of cancer-stroma interactions to this heterogeneity is poorly understood. Here, we report a paradigm to quantify phenotypic diversity in head and neck squamous cell carcinoma (HNSCC) with single-cell resolution. By combining cell-state markers with morphological features, we identify phenotypic signatures that correlate with clinical features, including metastasis and recurrence. Integration of tumor and stromal signatures reveals that partial epithelial-mesenchymal transition (pEMT) renders disease outcome highly sensitive to stromal composition, generating a strong prognostic and predictive signature. Spatial transcriptomics and subsequent analyses of cancer spheroid dynamics identify the cancer-associated fibroblast-pEMT axis as a nexus for intercompartmental signaling that reprograms pEMT cells into an invasive phenotype. Taken together, we establish a paradigm to identify clinically relevant tumor phenotypes and discover a cell-state-dependent interplay between stromal and epithelial compartments that drives cancer aggression.
上皮肿瘤的特点是肿瘤间和肿瘤内存在大量异质性,这使得诊断和治疗变得复杂。人们对肿瘤与基质之间的相互作用对这种异质性的影响知之甚少。在这里,我们报告了一种以单细胞分辨率量化头颈部鳞状细胞癌(HNSCC)表型多样性的范例。通过将细胞状态标记物与形态特征相结合,我们确定了与临床特征(包括转移和复发)相关的表型特征。整合肿瘤和基质特征后发现,部分上皮-间质转化(pEMT)使疾病结果对基质组成高度敏感,从而产生了一个强大的预后和预测特征。空间转录组学和随后的癌症球体动力学分析确定了癌症相关成纤维细胞-pEMT 轴是室间信号转导的枢纽,它将 pEMT 细胞重编程为侵袭性表型。总之,我们建立了一个范例来识别临床相关的肿瘤表型,并发现了基质和上皮细胞间依赖细胞状态的相互作用,这种相互作用推动了癌症的侵袭。
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引用次数: 0
Bitter taste receptors as sensors of gut luminal contents 作为肠腔内容物传感器的苦味感受器
IF 65.1 1区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-10-28 DOI: 10.1038/s41575-024-01005-z
Catia Sternini, Enrique Rozengurt

Taste is important in the selection of food and is orchestrated by a group of distinct receptors, the taste G protein-coupled receptors (GPCRs). Taste 1 receptors (Tas1rs in mice and TAS1Rs in humans; also known as T1Rs) detect sweet and umami tastes, and taste 2 receptors (Tas2rs in mice and TAS2Rs in humans; also known as T2Rs) detect bitterness. These receptors are also expressed in extraoral sites, including the gastrointestinal mucosa. Tas2rs/TAS2Rs have gained interest as potential targets to prevent or treat metabolic disorders. These bitter taste receptors are expressed in functionally distinct types of gastrointestinal mucosal cells, including enteroendocrine cells, which, upon stimulation, increase intracellular Ca2+ and release signalling molecules that regulate gut chemosensory processes critical for digestion and absorption of nutrients, for neutralization and expulsion of harmful substances, and for metabolic regulation. Expression of Tas2rs/TAS2Rs in gut mucosa is upregulated by high-fat diets, and intraluminal bitter ‘tastants’ affect gastrointestinal functions and ingestive behaviour through local and gut–brain axis signalling. Tas2rs/TAS2Rs are also found in Paneth and goblet cells, which release antimicrobial peptides and glycoproteins, and in tuft cells, which trigger type 2 immune response against parasites, thus providing a direct line of defence against pathogens. This Review will focus on gut Tas2r/TAS2R distribution, signalling and regulation in enteroendocrine cells, supporting their role as chemosensors of luminal content that serve distinct functions as regulators of body homeostasis and immune response.

味觉在选择食物时非常重要,由一组不同的受体--味觉 G 蛋白偶联受体(GPCRs)--协调。味觉 1 受体(小鼠的 Tas1rs 和人类的 TAS1Rs,也称为 T1Rs)可检测甜味和鲜味,味觉 2 受体(小鼠的 Tas2rs 和人类的 TAS2Rs,也称为 T2Rs)可检测苦味。这些受体在口外部位也有表达,包括胃肠粘膜。作为预防或治疗代谢紊乱的潜在靶点,Tas2rs/TAS2Rs 引起了人们的兴趣。这些苦味受体在功能不同类型的胃肠道粘膜细胞(包括肠内分泌细胞)中表达,这些细胞在受到刺激时会增加细胞内 Ca2+ 并释放信号分子,从而调节对营养物质的消化和吸收、有害物质的中和与排出以及新陈代谢调节至关重要的肠道化学感受过程。Tas2rs/TAS2Rs在肠道粘膜中的表达受高脂肪饮食的影响而上调,肠道内的苦味 "味道剂 "通过局部和肠道-大脑轴信号影响胃肠功能和摄食行为。Tas2rs/TAS2Rs还存在于释放抗菌肽和糖蛋白的Paneth细胞和鹅口疮细胞以及触发针对寄生虫的2型免疫反应的簇细胞中,从而为抵御病原体提供了一道直接防线。本综述将重点探讨肠道 Tas2r/TAS2R 在肠内分泌细胞中的分布、信号传导和调节,支持它们作为肠腔内容物化学传感器的作用,这些化学传感器具有调节机体平衡和免疫反应的独特功能。
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引用次数: 0
The CRISPR-associated adenosine deaminase Cad1 converts ATP to ITP to provide antiviral immunity CRISPR相关腺苷脱氨酶Cad1将ATP转化为ITP,提供抗病毒免疫力
IF 64.5 1区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-10-28 DOI: 10.1016/j.cell.2024.10.002
Christian F. Baca, Puja Majumder, James H. Hickling, Linzhi Ye, Marianna Teplova, Sean F. Brady, Dinshaw J. Patel, Luciano A. Marraffini
Type III CRISPR systems provide immunity against genetic invaders through the production of cyclic oligo-adenylate (cAn) molecules that activate effector proteins that contain CRISPR-associated Rossman fold (CARF) domains. Here, we characterized the function and structure of an effector in which the CARF domain is fused to an adenosine deaminase domain, CRISPR-associated adenosine deaminase 1 (Cad1). We show that upon binding of cA4 or cA6 to its CARF domain, Cad1 converts ATP to ITP, both in vivo and in vitro. Cryoelectron microscopy (cryo-EM) structural studies on full-length Cad1 reveal an hexameric assembly composed of a trimer of dimers, with bound ATP at inter-domain sites required for activity and ATP/ITP within deaminase active sites. Upon synthesis of cAn during phage infection, Cad1 activation leads to a growth arrest of the host that prevents viral propagation. Our findings reveal that CRISPR-Cas systems employ a wide range of molecular mechanisms beyond nucleic acid degradation to provide adaptive immunity in prokaryotes.
III型CRISPR系统通过产生环状低聚腺苷酸(cAn)分子来激活含有CRISPR相关罗斯曼折叠(CARF)结构域的效应蛋白,从而提供抵御基因入侵者的免疫力。在这里,我们描述了一种效应蛋白的功能和结构,这种效应蛋白的CARF结构域与腺苷脱氨酶结构域融合,即CRISPR相关腺苷脱氨酶1(Cad1)。我们发现,当 cA4 或 cA6 与其 CARF 结构域结合后,Cad1 在体内和体外都能将 ATP 转化为 ITP。对全长 Cad1 的冷冻电子显微镜(cryo-EM)结构研究显示,Cad1 是由三聚体和二聚体组成的六聚体,结合的 ATP 位于活性所需的结构域间位点,ATP/ITP 位于脱氨酶活性位点。在噬菌体感染过程中合成 cAn 时,Cad1 激活会导致宿主生长停滞,从而阻止病毒传播。我们的研究结果表明,CRISPR-Cas系统在核酸降解之外还采用了多种分子机制,为原核生物提供适应性免疫。
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引用次数: 0
Streptococcus anginosus promotes gastric inflammation, atrophy, and tumorigenesis in mice 副猪链球菌促进小鼠胃部炎症、萎缩和肿瘤发生
IF 64.5 1区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-10-26 DOI: 10.1016/j.cell.2024.10.036
Kaili Fu, Alvin Ho Kwan Cheung, Chi Chun Wong, Weixin Liu, Yunfei Zhou, Feixue Wang, Pingmei Huang, Kai Yuan, Olabisi Oluwabukola Coker, Yasi Pan, Danyu Chen, Nga Man Lam, Mengxue Gao, Xiang Zhang, He Huang, Ka Fai To, Joseph Jao Yiu Sung, Jun Yu
(Cell 187, 882–896.e1–e17; February 15, 2024)
(细胞》187 期,882-896.e1-e17;2024 年 2 月 15 日)
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引用次数: 0
Celebrating 20 years of Nature Reviews Gastroenterology & Hepatology 庆祝《自然》杂志《胃肠病学与肝病学》创刊 20 周年
IF 45.9 1区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-10-25 DOI: 10.1038/s41575-024-01002-2
Twenty years since the launch of Nature Reviews Gastroenterology & Hepatology, developments in research and clinical practice continue apace. In our anniversary issue, we focus on the past, present and future of gastroenterology and hepatology.
Nature Reviews Gastroenterology & Hepatology》创刊二十年来,研究和临床实践继续快速发展。在周年纪念特刊中,我们将聚焦胃肠病学和肝病学的过去、现在和未来。
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引用次数: 0
Alcohol-free and low-strength drinks: friend or foe? 无酒精和低浓度饮料:朋友还是敌人?
IF 65.1 1区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-10-25 DOI: 10.1038/s41575-024-01006-y
Thomas Marjot, Ashwin Dhanda
Consumption of no and low-alcohol (NoLo) beverages is now commonplace in modern society. However, the debate surrounding the relative risks and benefits of these products is nuanced and evolving, particularly in patients with a history of alcohol use disorder or alcohol-related liver disease. This Comment summarizes the major individual and public health implications of NoLo drinks in order to help inform our interactions with these patient groups.
饮用无酒精和低酒精(NoLo)饮料在现代社会已司空见惯。然而,围绕这些产品的相对风险和益处的争论是细致入微和不断变化的,尤其是对有酒精使用障碍或酒精相关肝病史的患者而言。本评论总结了无酒精饮料对个人和公共健康的主要影响,以帮助我们了解与这些患者群体的互动。
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引用次数: 0
Bile acid transport inhibitors in paediatric hepatology: more than just an itch 胆汁酸转运抑制剂在儿科肝病中的应用:不仅仅是瘙痒
IF 65.1 1区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-10-24 DOI: 10.1038/s41575-024-01008-w
Tamir Diamond, Binita M. Kamath
Apical sodium-dependent bile acid transporter inhibitors have revolutionized care for children with genetic cholestasis. This Clinical Outlook discusses how this new class of drugs came into clinical practice and how they might benefit transplant-free survival for a multitude of indications.
尖端钠依赖性胆汁酸转运体抑制剂彻底改变了对遗传性胆汁淤积症患儿的治疗。本期《临床展望》将讨论这一类新药是如何进入临床实践的,以及它们如何在多种适应症中为无移植生存带来益处。
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引用次数: 0
Host–pathobiont interactions in Crohn’s disease 克罗恩病中宿主与病原体之间的相互作用
IF 65.1 1区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-10-24 DOI: 10.1038/s41575-024-00997-y
Roberta Caruso, Bernard C. Lo, Grace Y. Chen, Gabriel Núñez

The mammalian intestine is colonized by trillions of microorganisms that are collectively referred to as the gut microbiota. The majority of symbionts have co-evolved with their host in a mutualistic relationship that benefits both. Under certain conditions, such as in Crohn’s disease, a subtype of inflammatory bowel disease, some symbionts bloom to cause disease in genetically susceptible hosts. Although the identity and function of disease-causing microorganisms or pathobionts in Crohn’s disease remain largely unknown, mounting evidence from animal models suggests that pathobionts triggering Crohn’s disease-like colitis inhabit certain niches and penetrate the intestinal tissue to trigger inflammation. In this Review, we discuss the distinct niches occupied by intestinal symbionts and the evidence that pathobionts triggering Crohn’s disease live in the mucus layer or near the intestinal epithelium. We also discuss how Crohn’s disease-associated mutations in the host disrupt intestinal homeostasis by promoting the penetration and accumulation of pathobionts in the intestinal tissue. Finally, we discuss the potential role of microbiome-based interventions in precision therapeutic strategies for the treatment of Crohn’s disease.

哺乳动物肠道内有数万亿微生物,统称为肠道微生物群。大多数共生菌与宿主共同进化,形成了互惠互利的关系。在某些条件下,例如在克罗恩病(炎症性肠病的一种亚型)中,一些共生菌在易感基因宿主体内开花结果,导致疾病。虽然克罗恩病中致病微生物或病原菌的身份和功能在很大程度上仍不为人所知,但来自动物模型的越来越多的证据表明,引发克罗恩病样结肠炎的病原菌栖息在特定的龛位中,并穿透肠道组织引发炎症。在本综述中,我们将讨论肠道共生体占据的独特壁龛,以及引发克罗恩病的病原体生活在粘液层或肠道上皮附近的证据。我们还讨论了宿主体内与克罗恩病相关的突变是如何通过促进肠组织中病原菌的渗透和积累来破坏肠道平衡的。最后,我们讨论了基于微生物组的干预措施在克罗恩病精准治疗策略中的潜在作用。
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引用次数: 0
Clade I mpox virus genomic diversity in the Democratic Republic of the Congo, 2018–2024: Predominance of zoonotic transmission 2018-2024 年刚果民主共和国 I 支 mpox 病毒基因组多样性:人畜共患病传播占主导地位
IF 64.5 1区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-10-24 DOI: 10.1016/j.cell.2024.10.017
Eddy Kinganda-Lusamaki, Adrienne Amuri-Aziza, Nicolas Fernandez-Nuñez, Jean-Claude Makangara-Cigolo, Catherine Pratt, Emmanuel Hasivirwe Vakaniaki, Nicole A. Hoff, Gradi Luakanda-Ndelemo, Prince Akil-Bandali, Sabin Sabiti Nundu, Noella Mulopo-Mukanya, Michel Ngimba, Brigitte Modadra-Madakpa, Ruth Diavita, Princesse Paku-Tshambu, Elisabeth Pukuta-Simbu, Sydney Merritt, Áine O’Toole, Nicola Low, Antoine Nkuba-Ndaye, Steve Ahuka-Mundeke
Recent reports raise concerns on the changing epidemiology of mpox in the Democratic Republic of the Congo (DRC). High-quality genomes were generated for 337 patients from 14/26 provinces to document whether the increase in number of cases is due to zoonotic spillover events or viral evolution, with enrichment of APOBEC3 mutations linked to human adaptation. Our study highlights two patterns of transmission contributing to the source of human cases. All new sequences from the eastern South Kivu province (n = 17; 4.8%) corresponded to the recently described clade Ib, associated with sexual contact and sustained human-to-human transmission. By contrast, all other genomes are clade Ia, which exhibits high genetic diversity with low numbers of APOBEC3 mutations compared with clade Ib, suggesting multiple zoonotic introductions. The presence of multiple clade I variants in urban areas highlights the need for coordinated international response efforts and more studies on the transmission and the reservoir of mpox.
最近的报道引起了人们对刚果民主共和国(DRC)麻风腮流行病学变化的关注。我们为来自14/26个省的337名患者生成了高质量的基因组,以记录病例数的增加是由于人畜共患病的蔓延还是病毒的进化,其中APOBEC3突变的富集与人类的适应有关。我们的研究强调了导致人类病例来源的两种传播模式。来自南基伍省东部的所有新序列(n = 17;4.8%)都与最近描述的支系 Ib 相符,这与性接触和持续的人际传播有关。与此相反,所有其他基因组都属于Ia支系,与Ib支系相比,Ia支系表现出较高的遗传多样性,但APOBEC3变异的数量较少,这表明存在多次人畜共患病的传入。在城市地区出现多个 I 支系变异体突出表明,需要协调国际应对努力,并对 mpox 的传播和储存库进行更多研究。
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引用次数: 0
Mechanisms of memory-supporting neuronal dynamics in hippocampal area CA3 海马 CA3 区记忆支持神经元动力学机制
IF 64.5 1区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-10-24 DOI: 10.1016/j.cell.2024.09.041
Yiding Li, John J. Briguglio, Sandro Romani, Jeffrey C. Magee
Hippocampal CA3 is central to memory formation and retrieval. Although various network mechanisms have been proposed, direct evidence is lacking. Using intracellular Vm recordings and optogenetic manipulations in behaving mice, we found that CA3 place-field activity is produced by a symmetric form of behavioral timescale synaptic plasticity (BTSP) at recurrent synapses among CA3 pyramidal neurons but not at synapses from the dentate gyrus (DG). Additional manipulations revealed that excitatory input from the entorhinal cortex (EC) but not the DG was required to update place cell activity based on the animal’s movement. These data were captured by a computational model that used BTSP and an external updating input to produce attractor dynamics under online learning conditions. Theoretical analyses further highlight the superior memory storage capacity of such networks, especially when dealing with correlated input patterns. This evidence elucidates the cellular and circuit mechanisms of learning and memory formation in the hippocampus.
海马 CA3 是记忆形成和检索的核心。尽管人们提出了各种网络机制,但缺乏直接证据。通过在行为小鼠体内进行细胞内Vm记录和光遗传学操作,我们发现CA3位置场活动是由CA3锥体神经元之间的递归突触上的对称形式的行为时标突触可塑性(BTSP)产生的,而不是由来自齿状回(DG)的突触产生的。其他操作显示,根据动物的运动更新位置细胞的活动需要来自内侧皮层(EC)而非 DG 的兴奋性输入。这些数据被一个计算模型所捕获,该模型使用 BTSP 和外部更新输入来产生在线学习条件下的吸引子动力学。理论分析进一步凸显了这种网络的超强记忆存储能力,尤其是在处理相关输入模式时。这些证据阐明了海马学习和记忆形成的细胞和电路机制。
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引用次数: 0
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Journal of Chemical Theory and Computation
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