Emerging Topics in Life Sciences最新文献

There is mounting evidence that plastic and microplastic contamination of soils can affect physico-chemical processes and soil fauna, as has been excellently summarised in many recently published meta-analyses and systematic reviews elsewhere. It has become clear that impacts are highly context dependent on, e.g. polymer type, shape, dose and the soil itself. Most published studies are based on experimental approaches using (semi-)controlled laboratory conditions. They typically focus on one or several representative animal species and their behaviour and/or physiological response - for example, earthworms, but rarely on whole communities of animals. Nevertheless, soil animals are rarely found in isolation and form part of intricate foodwebs. Soil faunal biodiversity is complex, and species diversity and interactions within the soil are very challenging to unravel, which may explain why there is still a dearth of information on this. Research needs to focus on soil animals from a holistic viewpoint, moving away from studies on animals in isolation and consider different trophic levels including their interactions. Furthermore, as evidence obtained from laboratory studies is complemented by relatively few studies done in field conditions, more research is needed to fully understand the mechanisms by which plastic pollution affects soil animals under realistic field conditions. However, field-based studies are typically more challenging logistically, requiring relatively large research teams, ideally of an interdisciplinary nature to maintain long-term field experiments. Lastly, with more alternative, (bio)degradable and/or compostable plastics being developed and used, their effects on soil animals will need to be further researched.

Plastic pollution can both chemically and physically impede marine biota. But it can also provide novel substrates for colonization, and its leachate might stimulate phytoplankton growth. Plastic contains carbon, which is released into the environment upon breakdown. All of these mechanisms have been proposed to contribute global impacts on open ocean carbon cycling and climate from ubiquitous plastic pollution. Laboratory studies produce compelling data showing both stimulation and inhibition of primary producers and disruption of predatory lifecycles at individual scale, but global carbon cycle impacts remain mostly unquantified. Preliminary modelling estimates ecosystem alterations and direct carbon release due to plastic pollution will remain vastly less disruptive to global carbon cycling than the direct damage wrought by fossil fuel carbon emissions. But when considered by mass, carbon in the form of bulky, persistent plastic particles may be disproportionally more influential on biogeochemical cycling than carbon as a gas in the atmosphere or as a dissolved component of seawater. Thus, future research should pay particular attention to the optical and other physical effects of marine plastic pollution on Earth system and ecological function, and resulting impacts on oxygen and nutrient cycling. Improved understanding of the breakdown of plastics in the marine environment should also be considered high-priority, as any potential perturbation of biological carbon cycling by plastic pollution is climate-relevant on centennial timescales and longer.

Assessing three interlinked issues, plastic pollution, climate change and biodiversity loss separately can overlook potential interactions that may lead to positive or negative impacts on global ecosystem processes. Recent studies suggest that threatened species and ecosystems are vulnerable to both plastic pollution and climate change stressors. Here we consider the connectivity and state of knowledge between these three environmental issues with a focus on the Global South. Nine out of top ten Long-Term Climate Risk Index (CRI) (2000-2019) ranked countries are located within the Global South, yet research is focused in the Global North. A literature search for the top ten Long-Term Climate Risk Index (CRI) (2000-2019) ranked countries matched a total of 2416 (3.3% of global publications) search results on climate change, with 56 (4% of the global publications) on plastic pollution, and seven (7.7% of the global publications) on both climate change and plastic pollution. There is a strong correlation between the Global South and high biodiversity hotspots, high food insecurity and low environmental performance. Using Bangladesh as a case study, we show the erosion rates and sea level rise scenarios that will increase ocean-bound plastic pollution and impact high biodiversity areas. Poverty alleviation and promoting renewable energy and green practices can significantly reduce the stress on the environment. We recommend that these connected planetary threats can be best addressed through a holistic and collaborative approach to research, a focus on the Global South, and an ambitious policy agenda.

Plastic pollution is now a worldwide phenomenon affecting all marine ecosystems, but some ecosystems and regions remain understudied. Here, we review the presence and impacts of macroplastics and microplastics for four such ecosystems: mangroves, seagrass meadows, the Arctic Ocean and the deep seafloor. Plastic production has grown steadily, and thus the impact on species and ecosystems has increased, too. The accumulated evidence also indicates that plastic pollution is an additional and increasing stressor to these already ecosystems and many of the species living in them. However, laboratory or field studies, which provide strong correlational or experimental evidence of ecological harm due to plastic pollution remain scarce or absent for these ecosystems. Based on these findings, we give some research recommendations for the future.

Current environmental monitoring efforts often focus on known, regulated contaminants ignoring the potential effects of unmeasured compounds and/or environmental factors. These specific, targeted approaches lack broader environmental information and understanding, hindering effective environmental management and policy. Switching to comprehensive, untargeted monitoring of contaminants, organism health, and environmental factors, such as nutrients, temperature, and pH, would provide more effective monitoring with a likely concomitant increase in environmental health. However, even this method would not capture subtle biochemical changes in organisms induced by chronic toxicant exposure. Ecosurveillance is the systematic collection, analysis, and interpretation of ecosystem health-related data that can address this knowledge gap and provide much-needed additional lines of evidence to environmental monitoring programs. Its use would therefore be of great benefit to environmental management and assessment. Unfortunately, the science of 'ecosurveillance', especially omics-based ecosurveillance is not well known. Here, we give an overview of this emerging area and show how it has been beneficially applied in a range of systems. We anticipate this review to be a starting point for further efforts to improve environmental monitoring via the integration of comprehensive chemical assessments and molecular biology-based approaches. Bringing multiple levels of omics technology-based assessment together into a systems-wide ecosurveillance approach will bring a greater understanding of the environment, particularly the microbial communities upon which we ultimately rely to remediate perturbed ecosystems.

The individual tissues and cell types of plants each have characteristic properties that contribute to the function of the plant as a whole. These are reflected by unique patterns of gene expression, protein and metabolite content, which enable cell-type-specific patterns of growth, development and physiology. Gene regulatory networks act within the cell types to govern the production and activity of these components. For the broader organism to grow and reproduce successfully, cell-type-specific activity must also function within the context of surrounding cell types, which is achieved by coordination of signalling pathways. We can investigate how gene regulatory networks are constructed and function using integrative 'omics technologies. Historically such experiments in plant biological research have been performed at the bulk tissue level, to organ resolution at best. In this review, we describe recent advances in cell- and tissue-specific 'omics technologies that allow investigation at much improved resolution. We discuss the advantages of these approaches for fundamental and translational plant biology, illustrated through the examples of specialised metabolism in medicinal plants and seed germination. We also discuss the challenges that must be overcome for such approaches to be adopted widely by the community.

Epigenomics encompasses a broad field of study, including the investigation of chromatin states, chromatin modifications and their impact on gene regulation; as well as the phenomena of epigenetic inheritance. The epigenome is a multi-modal layer of information superimposed on DNA sequences, instructing their usage in gene expression. As such, it is an emerging focus of efforts to improve crop performance. Broadly, this might be divided into avenues that leverage chromatin information to better annotate and decode plant genomes, and into complementary strategies that aim to identify and select for heritable epialleles that control crop traits independent of underlying genotype. In this review, we focus on the first approach, which we term 'epigenome guided' improvement. This encompasses the use of chromatin profiles to enhance our understanding of the composition and structure of complex crop genomes. We discuss the current progress and future prospects towards integrating this epigenomic information into crop improvement strategies; in particular for CRISPR/Cas9 gene editing and precision genome engineering. We also highlight some specific opportunities and challenges for grain and horticultural crops.