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Biomarkers: Opportunities and Challenges for Drug Development in the Current Regulatory Landscape. 生物标志物:当前监管环境下药物开发的机遇与挑战。
IF 3.8 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2020-12-08 eCollection Date: 2020-01-01 DOI: 10.1177/1177271920974652
Mariya Gromova, Annegret Vaggelas, Gabriele Dallmann, Diane Seimetz

Biomarkers are widely used at every stage of drug discovery and development. Utilisation of biomarkers has a potential to make drug discovery, development and approval processes more efficient. An overview of the current global regulatory landscape is presented in this article with particular emphasis on the validation and qualification of biomarkers, as well as legal framework for companion diagnostics. Furthermore, this article shows how the number of approved drugs with at least 1 biomarker used during development (biomarker acceptance) is affected by the recent advances in the biomarker regulations. More than half of analysed approvals were supported by biomarker data and there has been a slight increase in acceptance of biomarkers in recent years, even though the growth is not continuous. For certain pharmacotherapeutic groups, approvals with biomarkers are more common than without. Examples include immunosuppressants, immunostimulants, drugs used in diabetes, antithrombotic drugs, antineoplastic agents and antivirals. As a conclusion, potential benefits, challenges and opportunities of using biomarkers in drug discovery and development in the current regulatory landscape are summarised and discussed.

生物标志物广泛应用于药物发现和开发的各个阶段。生物标志物的利用有可能使药物发现、开发和批准过程更有效。本文概述了当前全球监管格局,特别强调生物标志物的验证和鉴定,以及伴随诊断的法律框架。此外,本文还展示了在开发过程中使用至少一种生物标志物的批准药物的数量(生物标志物接受度)如何受到生物标志物法规最新进展的影响。超过一半的批准分析得到了生物标志物数据的支持,近年来生物标志物的接受度略有增加,尽管增长不是连续的。对于某些药物治疗组,有生物标志物的批准比没有的更常见。例子包括免疫抑制剂、免疫刺激剂、用于糖尿病的药物、抗血栓药物、抗肿瘤药物和抗病毒药物。作为结论,总结和讨论了当前监管环境下在药物发现和开发中使用生物标志物的潜在好处、挑战和机遇。
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引用次数: 33
A Paradigm to Discover Biomarkers Associated With Chronic Kidney Disease Progression. 发现与慢性肾脏疾病进展相关的生物标志物的范例。
IF 3.8 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2020-12-01 eCollection Date: 2020-01-01 DOI: 10.1177/1177271920976146
Ibrahim Ali, Sara T Ibrahim, Rajkumar Chinnadurai, Darren Green, Maarten Taal, Tony D Whetton, Philip A Kalra

Biomarker discovery in the field of risk prediction in chronic kidney disease (CKD) embraces the prospect of improving our ability to risk stratify future adverse outcomes and thereby guide patient care in a new era of personalised medicine. However, many studies that report biomarkers predictive of CKD progression share a key methodological limitation: failure to characterise patients' renal progression precisely. This weakens any observable association between a biomarker and an outcome poorly defined by a patient's change in renal function over time. In this commentary, we discuss the need for a better approach in this research arena and describe a compelling strategy that has the advantage of offering robust and meaningful biomarker exploration relevant to CKD progression.

慢性肾脏疾病(CKD)风险预测领域的生物标志物发现,有望提高我们对未来不良后果进行风险分层的能力,从而在个性化医疗的新时代指导患者护理。然而,许多报告CKD进展的生物标志物的研究都有一个关键的方法局限性:无法准确表征患者肾脏进展。这削弱了任何可观察到的生物标志物与患者肾功能随时间变化所定义的预后之间的关联。在这篇评论中,我们讨论了在这一研究领域需要一种更好的方法,并描述了一种令人信服的策略,该策略具有提供与CKD进展相关的可靠且有意义的生物标志物探索的优势。
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引用次数: 0
Biomarkers: Our Path Towards a Cure for Alzheimer Disease. 生物标志物:我们治疗阿尔茨海默病的途径。
IF 3.8 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2020-11-25 eCollection Date: 2020-01-01 DOI: 10.1177/1177271920976367
Rawan Tarawneh

Over the last decade, biomarkers have significantly improved our understanding of the pathophysiology of Alzheimer disease (AD) and provided valuable tools to examine different disease mechanisms and their progression over time. While several markers of amyloid, tau, neuronal, synaptic, and axonal injury, inflammation, and immune dysregulation in AD have been identified, there is a relative paucity of biomarkers which reflect other disease mechanisms such as oxidative stress, mitochondrial injury, vascular or endothelial injury, and calcium-mediated excitotoxicity. Importantly, there is an urgent need to standardize methods for biomarker assessments across different centers, and to identify dynamic biomarkers which can monitor disease progression over time and/or response to potential disease-modifying treatments. The updated research framework for AD, proposed by the National Institute of Aging- Alzheimer's Association (NIA-AA) Work Group, emphasizes the importance of incorporating biomarkers in AD research and defines AD as a biological construct consisting of amyloid, tau, and neurodegeneration which spans pre-symptomatic and symptomatic stages. As results of clinical trials of AD therapeutics have been disappointing, it has become increasingly clear that the success of future AD trials will require the incorporation of biomarkers in participant selection, prognostication, monitoring disease progression, and assessing response to treatments. We here review the current state of fluid AD biomarkers, and discuss the advantages and limitations of the updated NIA-AA research framework. Importantly, the integration of biomarker data with clinical, cognitive, and imaging domains through a systems biology approach will be essential to adequately capture the molecular, genetic, and pathological heterogeneity of AD and its spatiotemporal evolution over time.

在过去的十年中,生物标志物显著提高了我们对阿尔茨海默病(AD)病理生理学的理解,并为研究不同的疾病机制及其随时间的进展提供了有价值的工具。虽然已经确定了AD中淀粉样蛋白、tau蛋白、神经元、突触和轴突损伤、炎症和免疫失调的几种标志物,但反映其他疾病机制(如氧化应激、线粒体损伤、血管或内皮损伤和钙介导的兴奋性毒性)的生物标志物相对缺乏。重要的是,迫切需要标准化不同中心的生物标志物评估方法,并确定动态生物标志物,以监测疾病随时间的进展和/或对潜在疾病改善治疗的反应。由美国国家衰老研究所-阿尔茨海默病协会(NIA-AA)工作组提出的阿尔茨海默病最新研究框架强调了在阿尔茨海默病研究中纳入生物标志物的重要性,并将阿尔茨海默病定义为一种由淀粉样蛋白、tau蛋白和神经变性组成的生物结构,跨越症状前和症状期。由于阿尔茨海默病治疗药物的临床试验结果令人失望,越来越清楚的是,未来阿尔茨海默病试验的成功将需要在参与者选择、预测、监测疾病进展和评估对治疗的反应方面纳入生物标志物。我们在此回顾了流体AD生物标志物的现状,并讨论了更新的NIA-AA研究框架的优点和局限性。重要的是,通过系统生物学方法将生物标志物数据与临床、认知和成像领域相结合,对于充分捕捉阿尔茨海默病的分子、遗传和病理异质性及其时空演变至关重要。
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引用次数: 17
Biobanking for Cancer Biomarker Research: Issues and Solutions. 癌症生物标志物研究的生物银行:问题与解决方案。
IF 3.8 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2020-10-19 eCollection Date: 2020-01-01 DOI: 10.1177/1177271920965522
Lise A Matzke, Peter H Watson
Biomarkers are critical tools that underpin precision medicine. However there has been slow progress and frequent failure of biomarker development. The root causes are multifactorial. Here, we focus on the need for fast, efficient, and reliable access to quality biospecimens as a critical area that impacts biomarker development. We discuss the past history of biobanking and the evolution of biobanking processes relevant to the specific area of cancer biomarker development as an example, and describe some solutions that can improve this area, thus potentially accelerating biomarker research.
生物标志物是支撑精准医疗的关键工具。然而,生物标志物的开发进展缓慢且经常失败。根本原因是多方面的。在这里,我们将重点放在快速、高效和可靠地获取高质量生物标本的需求上,这是影响生物标志物开发的关键领域。我们以生物银行的历史和与癌症生物标志物开发相关的特定领域的生物银行过程的演变为例,并描述了一些可以改善这一领域的解决方案,从而可能加速生物标志物的研究。
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引用次数: 12
Clusterin as a Potential Biomarker of Obesity-Related Alzheimer's Disease Risk. 簇蛋白作为肥胖相关阿尔茨海默病风险的潜在生物标志物
IF 3.8 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2020-10-12 eCollection Date: 2020-01-01 DOI: 10.1177/1177271920964108
David Bradley

Over 35% of the adult US population is obese. In turn, excess adiposity increases the risk of multiple complications including type 2 diabetes (T2D), insulin resistance, and cardiovascular disease; yet, obesity also independently heightens risk of Alzheimer's Disease (AD), even after adjusting for other important confounding risk factors including blood pressure, sociodemographics, cholesterol levels, smoking status, and Apolipoprotein E (ApoE) genotype. Among patients over the age of 65 with dementia, 37% have coexisting diabetes, and an estimated 7.3% of cases of AD are directly attributable to midlife obesity. Clusterin, also known as apolipoprotein J (ApoJ), is a multifunctional glycoprotein that acts as a molecular chaperone, assisting folding of secreted proteins. Clusterin has been implicated in several physiological and pathological states, including AD, metabolic disease, and cardiovascular disease. Despite long-standing interest in elucidating clusterin's relationship with amyloid beta (Aβ) aggregation/clearance and toxicity, significant knowledge gaps still exist. Altered clusterin expression and protein levels have been linked with cognitive and memory function, disrupted central nervous system lipid flux, as well as pathogenic brain structure; and its role in cardiometabolic disease suggests that it may be a link between insulin resistance, dyslipidemia, and AD. Here, we briefly highlight clusterin's relevance to AD by presenting existing evidence linking clusterin to AD and cardiometabolic disease, and discussing its potential utility as a biomarker for AD in the presence of obesity-related metabolic disease.

超过35%的美国成年人肥胖。反过来,过度肥胖增加了多种并发症的风险,包括2型糖尿病(T2D)、胰岛素抵抗和心血管疾病;然而,即使在调整了其他重要的混杂风险因素,包括血压、社会人口统计学、胆固醇水平、吸烟状况和载脂蛋白E (ApoE)基因型之后,肥胖也会独立地增加阿尔茨海默病(AD)的风险。在65岁以上的痴呆症患者中,37%患有糖尿病,估计7.3%的AD病例可直接归因于中年肥胖。聚簇蛋白,也被称为载脂蛋白J (ApoJ),是一种多功能糖蛋白,作为分子伴侣,协助分泌蛋白折叠。簇蛋白与多种生理和病理状态有关,包括AD、代谢性疾病和心血管疾病。尽管长期以来人们对阐明簇蛋白与β淀粉样蛋白(Aβ)聚集/清除和毒性的关系感兴趣,但仍存在重大的知识空白。簇蛋白表达和蛋白水平的改变与认知和记忆功能、中枢神经系统脂质通量紊乱以及致病性脑结构有关;它在心脏代谢疾病中的作用表明它可能是胰岛素抵抗、血脂异常和AD之间的联系。在这里,我们简要地强调了聚簇蛋白与AD和心脏代谢疾病之间的相关性,并讨论了它在存在肥胖相关代谢疾病的情况下作为AD生物标志物的潜在用途。
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引用次数: 9
Unraveling Pathophysiological Mechanisms of Parkinson's Disease: Contribution of CSF Biomarkers. 揭示帕金森病的病理生理机制:脑脊液生物标志物的贡献。
IF 3.8 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2020-10-12 eCollection Date: 2020-01-01 DOI: 10.1177/1177271920964077
Lucia Farotti, Federico Paolini Paoletti, Simone Simoni, Lucilla Parnetti

Diagnosis of Parkinson's disease (PD) relies on clinical history and physical examination, but misdiagnosis is common in early stages. Identification of biomarkers for PD may allow for early and more precise diagnosis and provide information about prognosis. Developments in analytical chemistry allow for the detection of a large number of molecules in cerebrospinal fluid (CSF), which are known to be associated with the pathogenesis of PD. Given the pathophysiology of PD, CSF α-synuclein species have the strongest rationale for use, also providing encouraging preliminary results in terms of early diagnosis. In the field of classical Alzheimer's disease (AD) biomarkers, low CSF Aβ42 levels have shown a robust prognostic value in terms of development of cognitive impairment. Other CSF biomarkers including lysosomal enzymes, neurofilament light chain, markers of neuroinflammation and oxidative stress, although promising, have not proved to be reliable for diagnostic and prognostic purposes yet. Overall, the implementation of CSF biomarkers may give a substantial contribution to the optimal use of disease-modifying drugs.

帕金森病(PD)的诊断依赖于临床病史和体格检查,但早期误诊是常见的。识别帕金森病的生物标志物可能有助于早期和更准确的诊断,并提供有关预后的信息。分析化学的发展允许检测脑脊液(CSF)中的大量分子,这些分子已知与PD的发病机制有关。考虑到PD的病理生理,CSF α-突触核蛋白具有最强的使用理由,在早期诊断方面也提供了令人鼓舞的初步结果。在经典的阿尔茨海默病(AD)生物标志物领域,低脑脊液a β42水平在认知障碍的发展方面显示出强大的预后价值。其他脑脊液生物标志物,包括溶酶体酶、神经丝轻链、神经炎症和氧化应激标志物,虽然有希望,但尚未被证明是可靠的诊断和预后目的。总之,脑脊液生物标志物的实施可能会对疾病改善药物的最佳使用做出实质性的贡献。
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引用次数: 4
Single Center "Snapshot" Experience With Donor-Derived Cell-Free DNA After Lung Transplantation. 单中心 "快照 "经验:肺移植术后的捐献者无细胞 DNA
IF 3.8 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2020-09-16 eCollection Date: 2020-01-01 DOI: 10.1177/1177271920958704
Deborah Jo Levine, David J Ross, Edward Sako
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引用次数: 0
Non-Targeted Metabolomic Analysis Reveals Serum Phospholipid Alterations in Patients with Early Stages of Diabetic Foot Ulcer. 非靶向代谢组学分析揭示早期糖尿病足溃疡患者血清磷脂改变
IF 3.8 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2020-09-09 eCollection Date: 2020-01-01 DOI: 10.1177/1177271920954828
Ignacio I Álvarez-Rodríguez, Eduardo Castaño-Tostado, David G García-Gutiérrez, Rosalía Reynoso-Camacho, Juana E Elton-Puente, Alicia Barajas-Pozos, Iza F Pérez-Ramírez

Diabetic foot ulcer (DFU) is a common complication of type 2 diabetes mellitus (T2DM) characterized by ulcer formation, which can lead to the amputation of lower extremities. However, the metabolic alterations related to this complication are not completely elucidated. Therefore, we carried out a metabolomic analysis of serum samples obtained from T2DM adult patients diagnosed with diabetic foot ulcer in a cross-sectional, observational, and comparative study. Eighty-four volunteers were classified into the following groups: without T2DM (control group, n = 30) and with T2DM and different stages of diabetic foot ulcer according to Wagner-Meggitt classification system: DFU G0 (n = 11), DFU G1 (n = 14), DFU G2 (n = 16), and DFU G3 (n = 13). The non-target metabolomic profile followed by chemometric analysis revealed that lysophosphatidylethanolamine (16:1) could be proposed as key metabolite related to the onset of diabetic foot ulcer; however, this phospholipid was not affected by diabetic foot ulcer progression. Therefore, further studies are necessary to validate these phospholipids as biomarker candidates for the early diagnosis of diabetic foot ulcer in T2DM patients.

糖尿病足溃疡(DFU)是2型糖尿病(T2DM)的常见并发症,以溃疡形成为特征,可导致下肢截肢。然而,与这种并发症相关的代谢改变尚未完全阐明。因此,我们对诊断为糖尿病足溃疡的T2DM成年患者的血清样本进行了代谢组学分析,这是一项横断面、观察和比较研究。84名志愿者按照Wagner-Meggitt分类系统分为:DFU G0 (n = 11)、DFU G1 (n = 14)、DFU G2 (n = 16)、DFU G3 (n = 13),无T2DM组(对照组,n = 30)和T2DM合并不同阶段糖尿病足溃疡组。非靶代谢组学分析和化学计量学分析显示溶血磷脂酰乙醇胺(16:1)可能是与糖尿病足溃疡发病相关的关键代谢物;然而,这种磷脂不受糖尿病足溃疡进展的影响。因此,需要进一步的研究来验证这些磷脂作为T2DM患者糖尿病足溃疡早期诊断的候选生物标志物。
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引用次数: 3
Fluid Biomarkers for Synaptic Dysfunction and Loss. 突触功能障碍和丧失的液体生物标志物。
IF 3.8 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2020-08-21 eCollection Date: 2020-01-01 DOI: 10.1177/1177271920950319
Elena Camporesi, Johanna Nilsson, Ann Brinkmalm, Bruno Becker, Nicholas J Ashton, Kaj Blennow, Henrik Zetterberg
Synapses are the site for brain communication where information is transmitted between neurons and stored for memory formation. Synaptic degeneration is a global and early pathogenic event in neurodegenerative disorders with reduced levels of pre- and postsynaptic proteins being recognized as a core feature of Alzheimer’s disease (AD) pathophysiology. Together with AD, other neurodegenerative and neurodevelopmental disorders show altered synaptic homeostasis as an important pathogenic event, and due to that, they are commonly referred to as synaptopathies. The exact mechanisms of synapse dysfunction in the different diseases are not well understood and their study would help understanding the pathogenic role of synaptic degeneration, as well as differences and commonalities among them and highlight candidate synaptic biomarkers for specific disorders. The assessment of synaptic proteins in cerebrospinal fluid (CSF), which can reflect synaptic dysfunction in patients with cognitive disorders, is a keen area of interest. Substantial research efforts are now directed toward the investigation of CSF synaptic pathology to improve the diagnosis of neurodegenerative disorders at an early stage as well as to monitor clinical progression. In this review, we will first summarize the pathological events that lead to synapse loss and then discuss the available data on established (eg, neurogranin, SNAP-25, synaptotagmin-1, GAP-43, and α-syn) and emerging (eg, synaptic vesicle glycoprotein 2A and neuronal pentraxins) CSF biomarkers for synapse dysfunction, while highlighting possible utilities, disease specificity, and technical challenges for their detection.
突触是大脑交流的场所,信息在神经元之间传递,并储存以形成记忆。突触变性是神经退行性疾病的全局和早期致病事件,突触前和突触后蛋白水平降低被认为是阿尔茨海默病(AD)病理生理的核心特征。与阿尔茨海默病一样,其他神经退行性和神经发育障碍也表现出突触稳态改变,这是一个重要的致病事件,因此它们通常被称为突触病变。突触功能障碍在不同疾病中的确切机制尚不清楚,他们的研究将有助于了解突触变性的致病作用,以及它们之间的差异和共同点,并突出特定疾病的候选突触生物标志物。脑脊液(CSF)突触蛋白的评估可以反映认知障碍患者的突触功能障碍,是一个感兴趣的领域。目前,大量的研究工作都是针对脑脊液突触病理的研究,以提高早期神经退行性疾病的诊断,并监测临床进展。在这篇综述中,我们将首先总结导致突触丧失的病理事件,然后讨论现有的突触功能障碍脑脊液生物标志物(如神经颗粒蛋白、SNAP-25、synaptotagmin-1、GAP-43和α-syn)和新出现的突触功能障碍脑脊液生物标志物(如突触囊泡糖蛋白2A和神经元戊烷素)的可用数据,同时强调它们检测的可能用途、疾病特异性和技术挑战。
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引用次数: 64
Simple Methods for Evaluating 4 Types of Biomarkers: Surrogate Endpoint, Prognostic, Predictive, and Cancer Screening. 评估4种生物标志物的简单方法:替代终点、预后、预测和癌症筛查。
IF 3.8 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2020-08-04 eCollection Date: 2020-01-01 DOI: 10.1177/1177271920946715
Stuart G Baker, Barnett S Kramer

We review simple methods for evaluating 4 types of biomarkers. First, we discuss the evaluation of surrogate endpoint biomarkers (to shorten a randomized trial) using 2 statistical and 3 biological criteria. Second, we discuss the evaluation of prognostic biomarkers (to predict the risk of disease) by comparing data collection costs with the anticipated net benefit of risk prediction. Third, we discuss the evaluation of predictive markers (to search for a promising subgroup in a randomized trial) using a multivariate subpopulation treatment effect pattern plot involving a risk difference or responders-only benefit function. Fourth, we discuss the evaluation of cancer screening biomarkers (to predict cancer in asymptomatic persons) using methodology to substantially reduce the sample size with stored specimens.

我们回顾了评价4种生物标志物的简单方法。首先,我们讨论了使用2个统计学标准和3个生物学标准评估替代终点生物标志物(缩短随机试验)。其次,我们通过比较数据收集成本和风险预测的预期净收益来讨论预后生物标志物的评估(以预测疾病风险)。第三,我们讨论了预测标记的评估(在随机试验中寻找有希望的亚组),使用多变量亚群治疗效果模式图,包括风险差异或仅应答者的益处函数。第四,我们讨论了癌症筛查生物标志物的评估(用于预测无症状患者的癌症),使用方法大幅减少储存标本的样本量。
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引用次数: 3
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