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Comprehensive Analysis of Established Dyslipidemia-Associated Loci in the Diabetes Prevention Program 糖尿病预防项目中血脂异常相关基因座的综合分析
Q Medicine Pub Date : 2016-10-26 DOI: 10.1161/CIRCGENETICS.116.001457
T. Varga, Alexandra H Winters, K. Jablonski, E. Horton, Prajakta Khare-Ranade, W. Knowler, S. Marcovina, F. Renström, K. Watson, R. Goldberg, J. Florez, T. Pollin, P. Franks
Background—We assessed whether 234 established dyslipidemia-associated loci modify the effects of metformin treatment and lifestyle intervention (versus placebo control) on lipid and lipid subfraction levels in the Diabetes Prevention Program randomized controlled trial. Methods and Results—We tested gene treatment interactions in relation to baseline-adjusted follow-up blood lipid concentrations (high-density lipoprotein [HDL] and low-density lipoprotein-cholesterol, total cholesterol, and triglycerides) and lipoprotein subfraction particle concentrations and size in 2993 participants with pre–diabetes. Of the previously reported single-nucleotide polymorphism associations, 32.5% replicated at P<0.05 with baseline lipid traits. Trait-specific genetic risk scores were robustly associated (3×10–4>P>1.1×10–16) with their respective baseline traits for all but 2 traits. Lifestyle modified the effect of the genetic risk score for large HDL particle numbers, such that each risk allele of the genetic risk scores was associated with lower concentrations of large HDL particles at follow-up in the lifestyle arm (&bgr;=−0.11 µmol/L per genetic risk scores risk allele; 95% confidence interval, −0.188 to −0.033; P=5×10–3; Pinteraction=1×10–3 for lifestyle versus placebo), but not in the metformin or placebo arms (P>0.05). In the lifestyle arm, participants with high genetic risk had more favorable or similar trait levels at 1-year compared with participants at lower genetic risk at baseline for 17 of the 20 traits. Conclusions—Improvements in large HDL particle concentrations conferred by lifestyle may be diminished by genetic factors. Lifestyle intervention, however, was successful in offsetting unfavorable genetic loading for most lipid traits. Clinical Trial Registration—URL: https://www.clinicaltrials.gov. Unique Identifier: NCT00004992.
背景:在糖尿病预防计划随机对照试验中,我们评估了234个已确定的血脂异常相关基因座是否改变了二甲双胍治疗和生活方式干预(与安慰剂对照)对脂质和脂质亚组分水平的影响。方法和结果:我们在2993名糖尿病前期患者中测试了基因治疗与基线调整后随访血脂浓度(高密度脂蛋白[HDL]和低密度脂蛋白-胆固醇、总胆固醇和甘油三酯)和脂蛋白亚颗粒浓度和大小的相互作用。在先前报道的单核苷酸多态性关联中,32.5%的人在PP> 1.1×10-16上复制了除2个性状外的所有基线性状。生活方式改变了遗传风险评分对大HDL颗粒数的影响,因此遗传风险评分的每个风险等位基因与生活方式组随访时大HDL颗粒浓度较低相关(每个遗传风险评分风险等位基因= - 0.11µmol/L);95%置信区间为- 0.188 ~ - 0.033;P = 5×三分;P交互作用= 1×10-3(生活方式组与安慰剂组),但在二甲双胍组或安慰剂组中没有(P < 0.05)。在生活方式方面,与基线遗传风险较低的参与者相比,高遗传风险的参与者在1年后的20个特征中的17个特征水平更有利或相似。结论:生活方式带来的高密度脂蛋白颗粒浓度的改善可能会因遗传因素而减弱。然而,生活方式干预成功地抵消了大多数脂质性状的不利遗传负荷。临床试验注册-网址:https://www.clinicaltrials.gov。唯一标识符:NCT00004992。
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引用次数: 6
Cardiovascular Risk Factors Associated With Blood Metabolite Concentrations and Their Alterations During a 4-Year Period in a Population-Based Cohort 心血管危险因素与血液代谢物浓度相关及其在4年期间的变化
Q Medicine Pub Date : 2016-10-26 DOI: 10.1161/CIRCGENETICS.116.001444
M. Lacruz, A. Kluttig, D. Tiller, D. Medenwald, I. Giegling, D. Rujescu, C. Prehn, J. Adamski, S. Frantz, K. Greiser, R. Emeny, G. Kastenmüller, J. Haerting
Background—The effects of lifestyle risk factors considered collectively on the human metabolism are to date unknown. We aim to investigate the association of these risk factors with metabolites and their changes during 4 years. Methods and Results—One hundred and sixty-three metabolites were measured in serum samples with the AbsoluteIDQ kit p150 (Biocrates) following a targeted metabolomics approach, in a population-based cohort of 1030 individuals, aged 45 to 83 years at baseline. We evaluated associations between metabolite concentrations (28 acylcarnitines, 14 amino acids, 9 lysophosphocholines, 72 phosphocholines, 10 sphingomyelins and sum of hexoses) and 5 lifestyle risk factors (body mass index [BMI], alcohol consumption, smoking, diet, and exercise). Multilevel or simple linear regression modeling adjusted for relevant covariates was used for the evaluation of cross-sectional or longitudinal associations, respectively; multiple testing correction was based on false discovery rate. BMI, alcohol consumption, and smoking were associated with lipid metabolism (reduced lyso- and acyl-alkyl-phosphatidylcholines and increased diacylphosphatidylcholines concentrations). Smoking showed positive associations with acylcarnitines, and BMI correlated inversely with nonessential amino acids. Fewer metabolites showed relative changes that were associated with baseline risk factors: increases in 5 different acyl-alkyl phosphatidylcholines were associated with lower alcohol consumption and BMI and with a healthier diet. Increased levels of tyrosine were associated with BMI. Sex-specific effects of smoking and BMI were found specifically related to acylcarnitine metabolism: in women higher BMI and in men more pack-years were associated with increases in acylcarnitines. Conclusions—This study showed sex-specific effects of lifestyle risks factors on human metabolism and highlighted their long-term metabolic consequences.
生活方式风险因素对人体代谢的总体影响迄今尚不清楚。我们的目的是研究这些危险因素与代谢物的关系及其在4年内的变化。方法和结果:采用靶向代谢组学方法,使用AbsoluteIDQ试剂盒p150 (Biocrates)在1030名基线年龄为45至83岁的人群中检测血清样本中的163种代谢物。我们评估了代谢物浓度(28种酰基肉碱、14种氨基酸、9种溶血胆碱、72种磷酸胆碱、10种鞘磷脂和己糖总量)与5种生活方式危险因素(体重指数、饮酒、吸烟、饮食和运动)之间的关系。采用校正相关协变量的多水平或简单线性回归模型分别评估横截面或纵向关联;多重测试修正基于错误发现率。BMI、饮酒和吸烟与脂质代谢相关(溶酶和酰基烷基磷脂酰胆碱降低,二酰基磷脂酰胆碱浓度升高)。吸烟与酰基肉碱呈正相关,BMI与非必需氨基酸呈负相关。较少的代谢物显示出与基线危险因素相关的相对变化:5种不同酰基-烷基磷脂酰胆碱的增加与较低的饮酒量和BMI以及更健康的饮食有关。酪氨酸水平升高与BMI有关。吸烟和身体质量指数的性别特异性影响被发现与酰基肉碱代谢特别相关:女性身体质量指数越高,男性年龄越长与酰基肉碱的增加有关。结论:本研究显示了生活方式风险因素对人体代谢的性别特异性影响,并强调了其长期代谢后果。
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引用次数: 29
Clinical Utility of Multimarker Genetic Risk Scores for Prediction of Incident Coronary Heart Disease: A Cohort Study Among Over 51 000 Individuals of European Ancestry 多标记遗传风险评分用于预测冠心病事件的临床应用:一项超过51000名欧洲血统个体的队列研究
Q Medicine Pub Date : 2016-10-25 DOI: 10.1161/CIRCGENETICS.116.001522
C. Iribarren, Meng Lu, E. Jorgenson, Manuel Martínez, C. Lluís-Ganella, I. Subirana, E. Salas, R. Elosúa
Background—We evaluated whether including multilocus genetic risk scores (GRSs) into the Framingham Risk Equation improves the predictive capacity, discrimination, and reclassification of asymptomatic individuals with respect to coronary heart disease (CHD) risk. Methods and Results—We performed a cohort study among 51 954 European-ancestry members of a Northern California integrated healthcare system (67% female; mean age 59) free of CHD at baseline (2007–2008). Four GRSs were constructed using between 8 and 51 previously identified genetic variants. After a mean (±SD) follow-up of 5.9 (±1.5) years, 1864 incident CHD events were documented. All GRSs were linearly associated with CHD in a model adjusted by individual risk factors: hazard ratio (95% confidence interval) per SD unit: 1.21 (1.15–1.26) for GRS_8, 1.20 (1.15–1.26) for GRS_12, 1.23 (1.17–1.28) for GRS_36, and 1.23 (1.17–1.28) for GRS_51. Inclusion of the GRSs improved the C statistic (&Dgr;C statistic =0.008 for GRS_8 and GRS_36; 0.007 for GRS_12; and 0.009 for GRS_51; all P<0.001). The net reclassification improvement was 5% for GRS_8, GRS_12, and GRS_36 and 4% for GRS_51 in the entire cohort and was (after correcting for bias) 9% for GRS_8 and GRS_12 and 7% for GRS_36 and GRS_51 when analyzing those classified as intermediate Framingham risk (10%–20%). The number required to treat to prevent 1 CHD after selectively treating with statins up-reclassified subjects on the basis of genetic information was 36 for GRS_8 and GRS_12, 41 for GRS_36, and 43 for GRS_51. Conclusions—Our results demonstrate significant and clinically relevant incremental discriminative/predictive capability of 4 multilocus GRSs for incident CHD among subjects of European ancestry.
背景:我们评估了将多位点遗传风险评分(GRSs)纳入Framingham风险方程是否能提高无症状个体对冠心病(CHD)风险的预测能力、区分和重新分类。方法和结果:我们对北加州综合医疗保健系统的51 954名欧洲血统成员进行了一项队列研究(67%为女性;平均年龄59岁)无冠心病(2007-2008)。使用8到51个先前确定的遗传变异构建了4个grs。在平均(±SD) 5.9(±1.5)年的随访后,记录了1864例冠心病事件。在经个体危险因素调整的模型中,所有GRSs与冠心病呈线性相关:每SD单位的风险比(95%置信区间):GRS_8为1.21 (1.15-1.26),GRS_12为1.20 (1.15-1.26),GRS_36为1.23 (1.17-1.28),GRS_51为1.23(1.17-1.28)。GRSs的加入提高了GRS_8和GRS_36的C统计量(&Dgr;C统计量=0.008;GRS_12为0.007;GRS_51为0.009;所有P < 0.001)。在整个队列中,GRS_8、GRS_12和GRS_36的净重分类改善率为5%,GRS_51的净重分类改善率为4%,在校正偏倚后,在分析被归类为中间Framingham风险(10%-20%)的人群时,GRS_8和GRS_12的净重分类改善率为9%,GRS_36和GRS_51的净重分类改善率为7%。根据遗传信息选择性地使用他汀类药物上分类受试者后,预防1例冠心病所需的治疗数量为GRS_8和GRS_12为36例,GRS_36为41例,GRS_51为43例。结论:我们的研究结果表明,在欧洲血统的受试者中,4个多位点GRSs对冠心病事件具有显著的和临床相关的增量判别/预测能力。
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引用次数: 48
Sucrose Nonfermenting-Related Kinase Enzyme–Mediated Rho-Associated Kinase Signaling is Responsible for Cardiac Function 蔗糖非发酵相关激酶酶介导的rho相关激酶信号通路与心功能有关
Q Medicine Pub Date : 2016-10-25 DOI: 10.1161/CIRCGENETICS.116.001515
Stephanie M. Cossette, Vijesh J. Bhute, Xiaoping Bao, Leanne M. Harmann, Mark A Horswill, I. Sinha, Adam J. Gastonguay, S. Pooya, Michelle Bordas, Suresh N. Kumar, S. Mirza, S. Palecek, J. Strande, R. Ramchandran
Background—Cardiac metabolism is critical for the functioning of the heart, and disturbance in this homeostasis is likely to influence cardiac disorders or cardiomyopathy. Our laboratory has previously shown that SNRK (sucrose nonfermenting related kinase) enzyme, which belongs to the AMPK (adenosine monophosphate–activated kinase) family, was essential for cardiac metabolism in mammals. Snrk global homozygous knockout (KO) mice die at postnatal day 0, and conditional deletion of Snrk in cardiomyocytes (Snrk cmcKO) leads to cardiac failure and death by 8 to 10 months. Methods and Results—We performed additional cardiac functional studies using echocardiography and identified further cardiac functional deficits in Snrk cmcKO mice. Nuclear magnetic resonance-based metabolomics analysis identified key metabolic pathway deficits in SNRK knockdown cardiomyocytes in vitro. Specifically, metabolites involved in lipid metabolism and oxidative phosphorylation are altered, and perturbations in these pathways can result in cardiac function deficits and heart failure. A phosphopeptide-based proteomic screen identified ROCK (Rho-associated kinase) as a putative substrate for SNRK, and mass spec-based fragment analysis confirmed key amino acid residues on ROCK that are phosphorylated by SNRK. Western blot analysis on heart lysates from Snrk cmcKO adult mice and SNRK knockdown cardiomyocytes showed increased ROCK activity. In addition, in vivo inhibition of ROCK partially rescued the in vivo Snrk cmcKO cardiac function deficits. Conclusions—Collectively, our data suggest that SNRK in cardiomyocytes is responsible for maintaining cardiac metabolic homeostasis, which is mediated in part by ROCK, and alteration of this homeostasis influences cardiac function in the adult heart.
背景:心脏代谢对心脏功能至关重要,这种体内平衡的紊乱可能会影响心脏疾病或心肌病。我们的实验室之前已经证明,SNRK(蔗糖非发酵相关激酶)酶,属于AMPK(单磷酸腺苷活化激酶)家族,对哺乳动物的心脏代谢至关重要。Snrk全球纯合敲除(KO)小鼠在出生后第0天死亡,心肌细胞中Snrk的条件缺失(Snrk cmcKO)导致心力衰竭和8至10个月死亡。方法和结果:我们使用超声心动图进行了额外的心功能研究,并在Snrk cmcKO小鼠中发现了进一步的心功能缺陷。基于核磁共振的代谢组学分析在体外鉴定了SNRK敲低心肌细胞的关键代谢途径缺陷。具体来说,参与脂质代谢和氧化磷酸化的代谢物被改变,这些途径的扰动可导致心功能缺陷和心力衰竭。基于磷酸化肽的蛋白质组学筛选发现ROCK (rho相关激酶)可能是SNRK的底物,基于质谱的片段分析证实了ROCK上的关键氨基酸残基被SNRK磷酸化。Western blot分析Snrk cmcKO成年小鼠和Snrk敲除心肌细胞的心脏裂解液显示ROCK活性增加。此外,体内抑制ROCK部分挽救了体内Snrk cmcKO心功能缺陷。结论:总的来说,我们的数据表明心肌细胞中的SNRK负责维持心脏代谢稳态,这部分是由ROCK介导的,而这种稳态的改变会影响成人心脏的功能。
{"title":"Sucrose Nonfermenting-Related Kinase Enzyme–Mediated Rho-Associated Kinase Signaling is Responsible for Cardiac Function","authors":"Stephanie M. Cossette, Vijesh J. Bhute, Xiaoping Bao, Leanne M. Harmann, Mark A Horswill, I. Sinha, Adam J. Gastonguay, S. Pooya, Michelle Bordas, Suresh N. Kumar, S. Mirza, S. Palecek, J. Strande, R. Ramchandran","doi":"10.1161/CIRCGENETICS.116.001515","DOIUrl":"https://doi.org/10.1161/CIRCGENETICS.116.001515","url":null,"abstract":"Background—Cardiac metabolism is critical for the functioning of the heart, and disturbance in this homeostasis is likely to influence cardiac disorders or cardiomyopathy. Our laboratory has previously shown that SNRK (sucrose nonfermenting related kinase) enzyme, which belongs to the AMPK (adenosine monophosphate–activated kinase) family, was essential for cardiac metabolism in mammals. Snrk global homozygous knockout (KO) mice die at postnatal day 0, and conditional deletion of Snrk in cardiomyocytes (Snrk cmcKO) leads to cardiac failure and death by 8 to 10 months. Methods and Results—We performed additional cardiac functional studies using echocardiography and identified further cardiac functional deficits in Snrk cmcKO mice. Nuclear magnetic resonance-based metabolomics analysis identified key metabolic pathway deficits in SNRK knockdown cardiomyocytes in vitro. Specifically, metabolites involved in lipid metabolism and oxidative phosphorylation are altered, and perturbations in these pathways can result in cardiac function deficits and heart failure. A phosphopeptide-based proteomic screen identified ROCK (Rho-associated kinase) as a putative substrate for SNRK, and mass spec-based fragment analysis confirmed key amino acid residues on ROCK that are phosphorylated by SNRK. Western blot analysis on heart lysates from Snrk cmcKO adult mice and SNRK knockdown cardiomyocytes showed increased ROCK activity. In addition, in vivo inhibition of ROCK partially rescued the in vivo Snrk cmcKO cardiac function deficits. Conclusions—Collectively, our data suggest that SNRK in cardiomyocytes is responsible for maintaining cardiac metabolic homeostasis, which is mediated in part by ROCK, and alteration of this homeostasis influences cardiac function in the adult heart.","PeriodicalId":48940,"journal":{"name":"Circulation-Cardiovascular Genetics","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2016-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1161/CIRCGENETICS.116.001515","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"64397728","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 12
Enhancing Literacy in Cardiovascular Genetics: A Scientific Statement From the American Heart Association 提高心血管遗传学的素养:美国心脏协会的科学声明
Q Medicine Pub Date : 2016-10-01 DOI: 10.1161/HCG.0000000000000031
S. Mital, K. Musunuru, V. Garg, M. Russell, D. Lanfear, Rajat M. Gupta, K. Hickey, M. Ackerman, M. Perez, D. Roden, Daniel Woo, C. Fox, S. Ware
Advances in genomics are enhancing our understanding of the genetic basis of cardiovascular diseases, both congenital and acquired, and stroke. These advances include finding genes that cause or increase the risk for childhood and adult-onset diseases, finding genes that influence how patients respond to medications, and the development of genetics-guided therapies for diseases. However, the ability of cardiovascular and stroke clinicians to fully understand and apply this knowledge to the care of their patients has lagged. This statement addresses what the specialist caring for patients with cardiovascular diseases and stroke should know about genetics; how they can gain this knowledge; how they can keep up-to-date with advances in genetics, genomics, and pharmacogenetics; and how they can apply this knowledge to improve the care of patients and families with cardiovascular diseases and stroke.
基因组学的进步增强了我们对先天性和后天心血管疾病以及中风的遗传基础的理解。这些进展包括发现导致或增加儿童和成人发病风险的基因,发现影响患者对药物反应的基因,以及开发以基因为指导的疾病治疗方法。然而,心血管和中风临床医生的能力,充分理解和应用这些知识,以照顾他们的病人已经落后。这一声明阐述了照顾心血管疾病和中风患者的专家应该了解的遗传学知识;他们如何获得这些知识;他们如何跟上遗传学、基因组学和药物遗传学的最新进展;以及他们如何运用这些知识来改善对心血管疾病和中风患者及其家属的护理。
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引用次数: 56
Epigenetic Signatures of Cigarette Smoking. 吸烟的表观遗传学特征
Q Medicine Pub Date : 2016-10-01 Epub Date: 2016-09-20 DOI: 10.1161/CIRCGENETICS.116.001506
Roby Joehanes, Allan C Just, Riccardo E Marioni, Luke C Pilling, Lindsay M Reynolds, Pooja R Mandaviya, Weihua Guan, Tao Xu, Cathy E Elks, Stella Aslibekyan, Hortensia Moreno-Macias, Jennifer A Smith, Jennifer A Brody, Radhika Dhingra, Paul Yousefi, James S Pankow, Sonja Kunze, Sonia H Shah, Allan F McRae, Kurt Lohman, Jin Sha, Devin M Absher, Luigi Ferrucci, Wei Zhao, Ellen W Demerath, Jan Bressler, Megan L Grove, Tianxiao Huan, Chunyu Liu, Michael M Mendelson, Chen Yao, Douglas P Kiel, Annette Peters, Rui Wang-Sattler, Peter M Visscher, Naomi R Wray, John M Starr, Jingzhong Ding, Carlos J Rodriguez, Nicholas J Wareham, Marguerite R Irvin, Degui Zhi, Myrto Barrdahl, Paolo Vineis, Srikant Ambatipudi, André G Uitterlinden, Albert Hofman, Joel Schwartz, Elena Colicino, Lifang Hou, Pantel S Vokonas, Dena G Hernandez, Andrew B Singleton, Stefania Bandinelli, Stephen T Turner, Erin B Ware, Alicia K Smith, Torsten Klengel, Elisabeth B Binder, Bruce M Psaty, Kent D Taylor, Sina A Gharib, Brenton R Swenson, Liming Liang, Dawn L DeMeo, George T O'Connor, Zdenko Herceg, Kerry J Ressler, Karen N Conneely, Nona Sotoodehnia, Sharon L R Kardia, David Melzer, Andrea A Baccarelli, Joyce B J van Meurs, Isabelle Romieu, Donna K Arnett, Ken K Ong, Yongmei Liu, Melanie Waldenberger, Ian J Deary, Myriam Fornage, Daniel Levy, Stephanie J London

Background: DNA methylation leaves a long-term signature of smoking exposure and is one potential mechanism by which tobacco exposure predisposes to adverse health outcomes, such as cancers, osteoporosis, lung, and cardiovascular disorders.

Methods and results: To comprehensively determine the association between cigarette smoking and DNA methylation, we conducted a meta-analysis of genome-wide DNA methylation assessed using the Illumina BeadChip 450K array on 15 907 blood-derived DNA samples from participants in 16 cohorts (including 2433 current, 6518 former, and 6956 never smokers). Comparing current versus never smokers, 2623 cytosine-phosphate-guanine sites (CpGs), annotated to 1405 genes, were statistically significantly differentially methylated at Bonferroni threshold of P<1×10-7 (18 760 CpGs at false discovery rate <0.05). Genes annotated to these CpGs were enriched for associations with several smoking-related traits in genome-wide studies including pulmonary function, cancers, inflammatory diseases, and heart disease. Comparing former versus never smokers, 185 of the CpGs that differed between current and never smokers were significant P<1×10-7 (2623 CpGs at false discovery rate <0.05), indicating a pattern of persistent altered methylation, with attenuation, after smoking cessation. Transcriptomic integration identified effects on gene expression at many differentially methylated CpGs.

Conclusions: Cigarette smoking has a broad impact on genome-wide methylation that, at many loci, persists many years after smoking cessation. Many of the differentially methylated genes were novel genes with respect to biological effects of smoking and might represent therapeutic targets for prevention or treatment of tobacco-related diseases. Methylation at these sites could also serve as sensitive and stable biomarkers of lifetime exposure to tobacco smoke.

背景:DNA甲基化是吸烟暴露的长期特征,也是烟草暴露易导致癌症、骨质疏松症、肺部和心血管疾病等不良健康后果的潜在机制之一:为了全面确定吸烟与 DNA 甲基化之间的关联,我们使用 Illumina BeadChip 450K 阵列对 16 个队列(包括 2433 名当前吸烟者、6518 名曾经吸烟者和 6956 名从不吸烟者)中 15 907 名参与者的血源性 DNA 样本进行了全基因组 DNA 甲基化评估的荟萃分析。将目前吸烟者与从不吸烟者进行比较,结果表明,2623 个胞嘧啶-磷酸鸟嘌呤位点(CpGs)(注释到 1405 个基因)在统计学上存在显著的甲基化差异,Bonferroni 临界值为 P-7(18 760 个 CpGs,错误发现率为 -7(2623 个 CpGs,错误发现率为 结论:吸烟对人体有广泛的影响:吸烟对全基因组甲基化具有广泛的影响,在许多位点上,这种影响在戒烟多年后仍然存在。许多差异甲基化基因是与吸烟的生物效应有关的新基因,可能是预防或治疗烟草相关疾病的治疗靶点。这些位点的甲基化还可以作为终生暴露于烟草烟雾的敏感而稳定的生物标志物。
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引用次数: 0
SCARB1 Gene Variants Are Associated With the Phenotype of Combined High High-Density Lipoprotein Cholesterol and High Lipoprotein (a). SCARB1基因变异与高密度脂蛋白胆固醇和高脂蛋白联合表型相关(a)。
Q Medicine Pub Date : 2016-10-01 DOI: 10.1161/CIRCGENETICS.116.001402
Xiaoping Yang, A. Sethi, L. Yanek, C. Knapper, B. Nordestgaard, A. Tybjærg‐Hansen, D. Becker, R. Mathias, A. Remaley, L. Becker
BACKGROUNDSR-B1 (scavenger receptor class B type 1), encoded by the gene SCARB1, is a lipoprotein receptor that binds both high-density lipoprotein (HDL) and low-density lipoprotein. We reported that SR-B1 is also a receptor for lipoprotein (a) (Lp(a)), mediating cellular uptake of Lp(a) in vitro and promoting clearance of Lp(a) in vivo. Although genetic variants in SCARB1 are associated with variations in HDL level, no SCARB1 variants affecting Lp(a) have been reported.METHODS AND RESULTSIn an index subject with high levels of HDL cholesterol and Lp(a), SCARB1 was sequenced and demonstrated a missense mutation resulting in an S129L substitution in exon 3. To follow up, 2 cohorts (GeneSTAR, the family-based Genetic Study of Atherosclerosis Risk [n=543], and CCHS, the population-based Copenhagen City Heart Study [n=5835]) were screened for combined HDL cholesterol and Lp(a) elevations. Subjects with the extreme phenotype (HDL >80 mg/dL and Lp(a) >100 nmol/L in GeneSTAR, n=8, and >100 mg/dL in CCHS, n=9) underwent sequencing of SCARB1 exons; 15 of 18 from the combined population demonstrated genetic variants, including rare or uncommon missense or splice site mutations in 9 and homozygous synonymous variants in 6. Functional studies with 4 of the SCARB1 variants (c.386C>T, c.631-14T>G, c.4G>A, and c.631-53mC>T & c.726+55mCG>CA) showed decreased receptor function in vitro.CONCLUSIONSHuman SCARB1 gene variants are associated with a new lipid phenotype, characterized by high levels of both HDL cholesterol and Lp(a). SCARB1 exonic variants often result in diminished function of translated SR-B1 via reduced binding/intracellular transport of Lp(a).
sr - b1(清道夫受体B类1型)由SCARB1基因编码,是一种结合高密度脂蛋白(HDL)和低密度脂蛋白的脂蛋白受体。我们报道SR-B1也是脂蛋白(a) (Lp(a))的受体,在体外介导Lp(a)的细胞摄取,并在体内促进Lp(a)的清除。尽管SCARB1的遗传变异与HDL水平的变化有关,但没有SCARB1变异影响Lp(a)的报道。方法和结果在一个高密度脂蛋白胆固醇和Lp(a)水平较高的指数对象中,对SCARB1进行了测序,结果显示出一个错义突变,导致外显子3的S129L替换。为了进行随访,对2个队列(GeneSTAR,基于家族的动脉粥样硬化风险遗传研究[n=543]和CCHS,基于人群的哥本哈根城市心脏研究[n=5835])进行了HDL胆固醇和Lp(a)联合升高的筛查。极端表型(GeneSTAR中HDL >为80 mg/dL, Lp(a) >为100 nmol/L, n=8, CCHS中>为100 mg/dL, n=9)的受试者进行SCARB1外显子测序;18个组合群体中有15个表现出遗传变异,其中9个出现罕见或不常见的错义或剪接位点突变,6个出现纯合同义变异。4种SCARB1变体(c.386C>T, c.631-14T>G, c.4G>A, c.631-53mC>T和c.726+55mCG>CA)的功能研究显示,体外受体功能下降。结论人类SCARB1基因变异与一种新的脂质表型相关,其特征是HDL胆固醇和Lp(a)水平均较高。SCARB1外显子变异通常通过减少Lp的结合/细胞内转运导致翻译的SR-B1功能减弱(a)。
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引用次数: 28
Genetic Risk Scores Predict Recurrence of Acute Coronary Syndrome 遗传风险评分预测急性冠状动脉综合征复发
Q Medicine Pub Date : 2016-04-01 DOI: 10.1161/CIRCGENETICS.115.001271
Satu Vaara, E. Tikkanen, Olavi Parkkonen, M. Lokki, S. Ripatti, M. Perola, M. Nieminen, J. Sinisalo
Background—Several clinical risk estimation tools have established their role in the prediction of recurrence of acute coronary syndrome (ACS), but the value of genetic risk scores (GRSs) remains unclear. We examined how well 2 different GRSs estimate recurrent ACS and whether clinical factors are associated with GRSs. Methods and Results—A cohort of 2090 consecutive patients with ACS who underwent coronary angiography between July 2006 and March 2008 in a single tertiary center was genotyped and prospectively followed up for a median of 5.5 years. We formed 2 partially overlapping GRSs: GRS47 of 47 single-nucleotide polymorphisms with previously reported significant association with coronary artery disease and GRS153 of 153 single-nucleotide polymorphisms with significant or suggestive association with coronary artery disease. GRS47 showed association with recurrent ACS independent of clinical factors (P=0.037; hazard ratio, 1.17; 95% confidence interval, 1.01–1.36). GRS153 had no association with either recurrent ACS or composite of recurrent ACS or death. Also, GRS47 was associated inversely with smoking and ST-segment–elevation myocardial infarction (P=0.004; odds ratio, 0.22; 95% confidence interval, 0.08–0.62 and P=0.041; odds ratio, 0.36; 95% confidence interval, 0.13–0.96, respectively). Conclusions—GRSs combined of 47 known coronary artery disease risk single-nucleotide polymorphisms were associated with recurrent ACS after multivariable adjustments in a heterogenic ACS population for the first time. Smoking and ST-segment–elevation myocardial infarction had an inverse association with the GRSs. The significance of smoking in relation to genetic coronary artery disease predisposition may merit further evaluation in patients with ACS.
背景:几种临床风险评估工具已经确立了它们在预测急性冠脉综合征(ACS)复发中的作用,但遗传风险评分(GRSs)的价值仍不清楚。我们检查了2种不同的GRSs对复发性ACS的评估效果,以及临床因素是否与GRSs相关。方法和结果:对2006年7月至2008年3月在单一三级中心连续接受冠状动脉造影的2090例ACS患者进行了基因分型,并进行了中位5.5年的前瞻性随访。我们形成了2个部分重叠的GRSs:先前报道的与冠状动脉疾病显著相关的47个单核苷酸多态性中的GRS47,以及与冠状动脉疾病显著或暗示相关的153个单核苷酸多态性中的GRS153。GRS47与ACS复发相关,与临床无关(P=0.037;风险比1.17;95%置信区间为1.01-1.36)。GRS153与复发性ACS或复合复发性ACS或死亡均无相关性。此外,GRS47与吸烟和st段抬高型心肌梗死呈负相关(P=0.004;优势比0.22;95%置信区间为0.08-0.62,P=0.041;优势比0.36;95%置信区间分别为0.13-0.96)。结论:在异质性ACS人群中,grss联合47个已知冠状动脉疾病风险单核苷酸多态性首次与ACS复发相关。吸烟和st段抬高型心肌梗死与GRSs呈负相关。吸烟与遗传性冠状动脉疾病易感性的关系值得在ACS患者中进一步评估。
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引用次数: 24
Systematic Characterization of Long Noncoding RNAs Reveals the Contrasting Coordination of Cis- and Trans-Molecular Regulation in Human Fetal and Adult Hearts 长链非编码rna的系统表征揭示了人类胎儿和成人心脏中顺式和反式分子调控的对比协调
Q Medicine Pub Date : 2016-04-01 DOI: 10.1161/CIRCGENETICS.115.001264
Chunjiang He, Hanyang Hu, Kitchener D. Wilson, Haodi Wu, Jing Feng, Si-Yu Xia, Jared M. Churko, K. Qu, Howard Y. Chang, Joseph C. Wu
Background—The molecular regulation of heart development is regulated by cis- and trans-factors acting on the genome and epigenome. As a class of important regulatory RNAs, the role of long noncoding RNAs (lncRNAs) in human heart development is still poorly understood. Furthermore, factors that interact with lncRNAs in this process are not well characterized. Methods and Results—Using RNA sequencing, we systematically define the contrasting lncRNA expression patterns between fetal and adult hearts. We report that lncRNAs upregulated in adult versus fetal heart have different sequence features and distributions. For example, the adult heart expresses more sense lncRNAs compared with fetal heart. We also report the coexpression of lncRNAs and neighboring coding genes that have important functions in heart development. Importantly, the regulation of lncRNA expression during fetal to adult heart development seems to be due, in part, to the coordination of specific developmental epigenetic modifications, such as H3K4me1 and H3k4me3. The expression of promoter-associated lncRNAs in adult and fetal hearts also seems to be related to these epigenetic states. Finally, transcription factor–binding analysis suggests that lncRNAs are directly regulating cardiac gene expression during development. Conclusions—We provide a systematic analysis of lncRNA control of heart development that gives clues to the roles that specific lncRNAs play in fetal and adult hearts.
心脏发育的分子调控是由作用于基因组和表观基因组的顺式和反式因子调控的。长链非编码rna (long noncoding rna, lncRNAs)作为一类重要的调控rna,在人类心脏发育中的作用尚不清楚。此外,在这一过程中与lncrna相互作用的因子并没有很好地表征。方法与结果:利用RNA测序技术,我们系统地定义了胎儿和成人心脏之间lncRNA的表达模式差异。我们报道,在成人和胎儿心脏中上调的lncrna具有不同的序列特征和分布。例如,成人心脏比胎儿心脏表达更多的sense lncrna。我们还报道了在心脏发育中具有重要功能的lncRNAs和邻近编码基因的共表达。重要的是,在胎儿到成人心脏发育过程中,lncRNA表达的调节似乎部分归因于特定发育表观遗传修饰的协调,如H3K4me1和H3k4me3。启动子相关lncrna在成人和胎儿心脏中的表达似乎也与这些表观遗传状态有关。最后,转录因子结合分析表明lncrna在发育过程中直接调节心脏基因的表达。结论:我们对lncRNA控制心脏发育进行了系统分析,为特定lncRNA在胎儿和成人心脏中发挥的作用提供了线索。
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引用次数: 44
Interaction of Insulin Resistance and Related Genetic Variants With Triglyceride-Associated Genetic Variants 胰岛素抵抗和相关遗传变异与甘油三酯相关遗传变异的相互作用
Q Medicine Pub Date : 2016-04-01 DOI: 10.1161/CIRCGENETICS.115.001246
Y. Klimentidis, Amit Arora
Background—Several studies suggest that some triglyceride-associated single-nucleotide polymorphisms (SNPs) have pleiotropic and opposite effects on glycemic traits. This potentially implicates them in pathways such as de novo lipogenesis, which is presumably upregulated in the context of insulin resistance. We therefore tested whether the association of triglyceride-associated SNPs with triglyceride levels differs according to one’s level of insulin resistance. Methods and Results—In 3 cohort studies (combined n=12 487), we tested the interaction of established triglyceride-associated SNPs (individually and collectively) with several traits related to insulin resistance, on triglyceride levels. We also tested the interaction of triglyceride SNPs with fasting insulin–associated SNPs, individually and collectively, on triglyceride levels. We find significant interactions of a weighted genetic risk score for triglycerides with insulin resistance on triglyceride levels (Pinteraction=2.73×10−11 and Pinteraction=2.48×10–11 for fasting insulin and homeostasis model assessment of insulin resistance, respectively). The association of the triglyceride genetic risk score with triglyceride levels is >60% stronger among those in the highest tertile of homeostasis model assessment of insulin resistance compared with those in the lowest tertile. Individual SNPs contributing to this trend include those in/near GCKR, CILP2, and IRS1, whereas PIGV-NROB2 and LRPAP1 display an opposite trend of interaction. In the pooled data set, we also identify a SNP–by–SNP interaction involving a triglyceride-associated SNP, rs4722551 near MIR148A, with a fasting insulin–associated SNP, rs4865796 in ARL15 (Pinteraction=4.1×10−5). Conclusions—Our findings may thus provide genetic evidence for the upregulation of triglyceride levels in insulin-resistant individuals, in addition to identifying specific genetic loci and a SNP–by–SNP interaction implicated in this process.
一些研究表明,一些甘油三酯相关的单核苷酸多态性(SNPs)对血糖性状具有多效性和相反的作用。这可能暗示它们参与了新生脂肪生成等途径,这可能在胰岛素抵抗的背景下被上调。因此,我们测试了甘油三酯相关snp与甘油三酯水平的关系是否因胰岛素抵抗水平而异。方法和结果:在3项队列研究中(合计n= 12487),我们测试了已建立的甘油三酯相关snp(单独和集体)与胰岛素抵抗相关的几个性状对甘油三酯水平的相互作用。我们还测试了甘油三酯snp与空腹胰岛素相关snp的相互作用,单独和集体,甘油三酯水平。我们发现甘油三酯加权遗传风险评分与甘油三酯水平的胰岛素抵抗之间存在显著的相互作用(空腹胰岛素和胰岛素抵抗稳态模型评估的Pinteraction=2.73×10 - 11和Pinteraction= 2.48×10-11)。甘油三酯遗传风险评分与甘油三酯水平的相关性在胰岛素抵抗稳态模型评估中处于最高分位数的人群中比处于最低分位数的人群强60%。导致这一趋势的单个snp包括GCKR、CILP2和IRS1中/附近的snp,而PIGV-NROB2和LRPAP1则表现出相反的相互作用趋势。在汇总的数据集中,我们还发现了一个SNP - SNP相互作用,涉及甘油三酯相关SNP, MIR148A附近的rs4722551,以及ARL15中空腹胰岛素相关SNP, rs4865796 (p相互作用=4.1×10−5)。结论:我们的研究结果可能因此为胰岛素抵抗个体甘油三酯水平上调提供了遗传学证据,此外还确定了与此过程相关的特定遗传位点和snp - snp相互作用。
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引用次数: 9
期刊
Circulation-Cardiovascular Genetics
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