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Merging Electronic Health Record Data and Genomics for Cardiovascular Research: A Science Advisory From the American Heart Association 合并电子健康记录数据和基因组学用于心血管研究:来自美国心脏协会的科学咨询
Q Medicine Pub Date : 2016-04-01 DOI: 10.1161/HCG.0000000000000029
Jennifer L. Hall, J. Ryan, B. Bray, Candice Brown, D. Lanfear, L. Newby, M. Relling, Neil Risch, D. Roden, S. Shaw, J. Tcheng, J. Tenenbaum, Thomas N Wang, W. Weintraub
The process of scientific discovery is rapidly evolving. The funding climate has influenced a favorable shift in scientific discovery toward the use of existing resources such as the electronic health record. The electronic health record enables long-term outlooks on human health and disease, in conjunction with multidimensional phenotypes that include laboratory data, images, vital signs, and other clinical information. Initial work has confirmed the utility of the electronic health record for understanding mechanisms and patterns of variability in disease susceptibility, disease evolution, and drug responses. The addition of biobanks and genomic data to the information contained in the electronic health record has been demonstrated. The purpose of this statement is to discuss the current challenges in and the potential for merging electronic health record data and genomics for cardiovascular research.
科学发现的过程正在迅速发展。资金环境影响了科学发现向利用现有资源(如电子健康记录)的有利转变。电子健康记录结合包括实验室数据、图像、生命体征和其他临床信息在内的多维表型,实现了对人类健康和疾病的长期展望。初步工作证实了电子健康记录在理解疾病易感性、疾病演变和药物反应的变异性机制和模式方面的效用。已证明将生物库和基因组数据添加到电子健康记录所包含的信息中。本声明的目的是讨论将电子健康记录数据和基因组学合并用于心血管研究的当前挑战和潜力。
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引用次数: 20
Sudden Cardiac Arrest and Rare Genetic Variants in the Community 突发心脏骤停和罕见的遗传变异在社区
Q Medicine Pub Date : 2016-04-01 DOI: 10.1161/CIRCGENETICS.115.001263
A. Milano, M. Blom, Elisabeth M. Lodder, D. A. van Hoeijen, J. Barc, T. Koopmann, A. Bardai, L. Beekman, P. Lichtner, M. P. van den Berg, A. Wilde, C. Bezzina, H. Tan
Background—Sudden cardiac arrest (SCA) ranks among the most common causes of death worldwide. Because SCA is most often lethal, yet mostly occurs in individuals without previously known cardiac disease, the identification of patients at risk for SCA could save many lives. In unselected SCA victims from the community, common genetic variants (which are not disease-causing per se, but may increase susceptibility to ventricular fibrillation) are found to be associated with increased SCA risk. However, whether rare genetic variants contribute to SCA risk in the community is largely unexplored. Methods and Results—We here investigated the involvement of rare genetic variants in SCA risk at the population level by studying the prevalence of 6 founder genetic variants present in the Dutch population (PLN-p.Arg14del, MYBPC3-p.Trp792fsX17, MYBPC3-p.Arg943X, MYBPC3-p.Pro955fsX95, PKP2-p.Arg79X, and the Chr7q36 idiopathic ventricular fibrillation risk haplotype) in a cohort of 1440 unselected Dutch SCA victims included in the Amsterdam Resuscitation Study (ARREST). The six studied founder mutations were found to be more prevalent (1.1%) in the ARREST SCA cohort compared with an ethnically and geographically matched set of controls (0.4%, n=1379; P<0.05) or a set of Dutch individuals drawn from the Genome of the Netherlands (GoNL) study (0%, n=500; P<0.02). Conclusions—This finding provides proof-of-concept for the notion that rare genetic variants contribute to some extent to SCA risk in the community.
背景——心脏骤停(SCA)是全世界最常见的死亡原因之一。由于SCA通常是致命的,但大多数发生在以前没有已知心脏疾病的个体中,因此识别有SCA风险的患者可以挽救许多生命。在来自社区的未选择的SCA受害者中,发现常见的遗传变异(其本身不致病,但可能增加对心室颤动的易感性)与SCA风险增加有关。然而,在社区中,罕见的遗传变异是否会导致SCA风险在很大程度上是未知的。方法和结果:通过研究荷兰人群(PLN-p)中存在的6种始祖遗传变异的流行程度,我们在人群水平上调查了罕见遗传变异与SCA风险的关系。Arg14del MYBPC3-p。Trp792fsX17 MYBPC3-p。Arg943X MYBPC3-p。Pro955fsX95 PKP2-p。Arg79X和Chr7q36特发性心室颤动风险单倍型)在阿姆斯特丹复苏研究(ARREST)中纳入的1440名未选择的荷兰SCA患者队列中。研究发现,与种族和地理匹配的对照组(0.4%,n=1379;P<0.05)或来自荷兰基因组(GoNL)研究的一组荷兰人(0%,n=500;P < 0.02)。结论:这一发现为罕见的遗传变异在一定程度上促进社区SCA风险的概念提供了概念证明。
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引用次数: 26
Treatment Gaps in Adults With Heterozygous Familial Hypercholesterolemia in the United States: Data From the CASCADE-FH Registry 美国成人杂合子家族性高胆固醇血症的治疗差距:来自CASCADE-FH注册的数据
Q Medicine Pub Date : 2016-03-24 DOI: 10.1161/CIRCGENETICS.116.001381
H. Schwertz, M. Rondina, J. Millar, Beauséjour Ladouceur, D. Abrams, Wei Wang, S. Oh, M. Koester, Sandra Abramowicz, Nan Wang, A. Tall, E. Theusch, Celia C. Cubitt, A. Dosé, K. Stevens, Devesh Naidoo, G. D. Smith, M. Ala-Korpela, J. Kettunen, P. Würtz, P. Soininen, A. Kangas, C. Dale, D. Lawlor, T. Gaunt, Emil M Degoma, Z. Ahmad, Emily C. O'Brien, I. Kindt, P. Shrader, C. Newman, Y. Pokharel, S. Baum, L. Hemphill, L. Hudgins, C. Ahmed, S. Gidding, Danielle Duffy, W. Neal, K. Wilemon, M. Roe, D. Rader, C. Ballantyne, M. Linton, P. Duell, P. Moriarty, Chenyi Xue, R. McPherson, H. Watkins, H. Schunkert
Background— Cardiovascular disease burden and treatment patterns among patients with familial hypercholesterolemia (FH) in the United States remain poorly described. In 2013, the FH Foundation launched the Cascade Screening for Awareness and Detection (CASCADE) of FH Registry to address this knowledge gap. Methods and Results— We conducted a cross-sectional analysis of 1295 adults with heterozygous FH enrolled in the CASCADE-FH Registry from 11 US lipid clinics. Median age at initiation of lipid-lowering therapy was 39 years, and median age at FH diagnosis was 47 years. Prevalent coronary heart disease was reported in 36% of patients, and 61% exhibited 1 or more modifiable risk factors. Median untreated low-density lipoprotein cholesterol (LDL-C) was 239 mg/dL. At enrollment, median LDL-C was 141 mg/dL; 42% of patients were taking high-intensity statin therapy and 45% received >1 LDL-lowering medication. Among FH patients receiving LDL-lowering medication(s), 25% achieved an LDL-C <100 mg/dL and 41% achieved a ≥50% LDL-C reduction. Factors associated with prevalent coronary heart disease included diabetes mellitus (adjusted odds ratio 1.74; 95% confidence interval 1.08–2.82) and hypertension (2.48; 1.92–3.21). Factors associated with a ≥50% LDL-C reduction from untreated levels included high-intensity statin use (7.33; 1.86–28.86) and use of >1 LDL-lowering medication (1.80; 1.34–2.41). Conclusions— FH patients in the CASCADE-FH Registry are diagnosed late in life and often do not achieve adequate LDL-C lowering, despite a high prevalence of coronary heart disease and risk factors. These findings highlight the need for earlier diagnosis of FH and initiation of lipid-lowering therapy, more consistent use of guideline-recommended LDL-lowering therapy, and comprehensive management of traditional coronary heart disease risk factors.
背景-在美国,家族性高胆固醇血症(FH)患者的心血管疾病负担和治疗模式仍然缺乏描述。2013年,FH基金会启动了FH登记处的意识和检测级联筛查(Cascade),以解决这一知识缺口。方法和结果:我们对美国11家脂质诊所的CASCADE-FH登记处登记的1295名杂合子FH成人进行了横断面分析。降脂治疗开始时的中位年龄为39岁,FH诊断时的中位年龄为47岁。36%的患者报告有冠心病,61%的患者表现出1个或更多可改变的危险因素。未经治疗的中位低密度脂蛋白胆固醇(LDL-C)为239 mg/dL。入组时,中位LDL-C为141 mg/dL;42%的患者接受了高强度他汀类药物治疗,45%的患者接受了bbb1降ldl药物治疗。在接受降ldl药物治疗的FH患者中,25%的患者接受了降ldl - c1药物治疗(1.80;1.34 - -2.41)。结论:在CASCADE-FH登记处,FH患者被诊断为生命晚期,尽管冠心病和危险因素的患病率很高,但通常不能达到足够的LDL-C降低。这些发现强调了早期诊断FH和开始降脂治疗的必要性,更一致地使用指南推荐的降脂治疗,以及对传统冠心病危险因素的综合管理。
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引用次数: 160
Common and Rare Genetic Variation in CCR2, CCR5, or CX3CR1 and Risk of Atherosclerotic Coronary Heart Disease and Glucometabolic Traits CCR2、CCR5或CX3CR1常见和罕见的遗传变异与动脉粥样硬化性冠心病和糖代谢特征的风险
Q Medicine Pub Date : 2016-03-24 DOI: 10.1161/CIRCGENETICS.115.001374
J. Golbus, N. Stitziel, Wei Zhao, Chenyi Xue, M. Farrall, R. McPherson, J. Erdmann, P. Deloukas, H. Watkins, H. Schunkert, N. Samani, D. Saleheen, S. Kathiresan, M. Reilly
Background— The chemokine receptors CCR2, CCR5, and CX3CR1 coordinate monocyte trafficking in homeostatic and inflammatory states. Multiple small human genetic studies have variably linked single nucleotide polymorphisms in these genes to cardiometabolic disease. We interrogated genome-wide association, exome sequencing, and exome array genotyping studies to ascertain the relationship between variation in these genes and coronary artery disease (CAD), myocardial infarction (MI), and glucometabolic traits. Methods and Results— We interrogated the CARDIoGRAMplusC4D (Coronary ARtery DIsease Genome wide Replication and Meta-analysis [CARDIoGRAM] plus The Coronary Artery Disease [C4D] Genetics) (60 801 cases and 123 504 controls), the MIGen and CARDIoGRAM Exome consortia (42 335 cases and 78 240 controls), and Exome Sequencing Project and Early-Onset Myocardial Infarction (ESP EOMI; 4703 cases and 5090 controls) data sets to ascertain the relationship between common, low frequency, and rare variation in CCR2, CCR5, or CX3CR1 with CAD and MI. We did not identify any variant associated with CAD or MI. We then explored common and low-frequency variation in South Asians through Pakistan Risk of Myocardial Infarction Study (PROMIS; 9058 cases and 8379 controls), identifying 6 variants associated with MI including CX3CR1 V249I. Finally, reanalysis of the European HapMap imputed Diabetes Genetics Replication and Meta-Analysis (DIAGRAM), Global Lipids Genetics Consortium (GLGC), Genetic Investigation of Anthropometric Traits (GIANT), and Meta-Analysis of Glucose and Insulin-related Traits Consortium (MAGIC) data sets revealed no association with glucometabolic traits although 3 single nucleotide polymorphisms in PROMIS were associated with type II diabetes mellitus. Conclusions— No chemokine receptor variant was associated with CAD, MI, or glucometabolic traits in large European ancestry cohorts. In a South Asian cohort, we identified single nucleotide polymorphism associations with MI and type II diabetes mellitus but these did not meet significance in cohorts of European ancestry. These findings suggest the need for larger studies in South Asians but exclude clinically meaningful associations with CAD and glucometabolic traits in Europeans.
趋化因子受体CCR2、CCR5和CX3CR1在稳态和炎症状态下协调单核细胞运输。多个小型人类遗传研究已将这些基因的单核苷酸多态性与心脏代谢疾病联系起来。我们研究了全基因组关联、外显子组测序和外显子组阵列基因分型研究,以确定这些基因变异与冠状动脉疾病(CAD)、心肌梗死(MI)和糖代谢性状之间的关系。方法和结果-我们查询了CARDIoGRAMplusC4D(冠状动脉疾病基因组广泛复制和荟萃分析[CARDIoGRAM]加冠状动脉疾病[C4D]遗传学)(60801例和123 504例对照),MIGen和CARDIoGRAM外显子组联盟(42 335例和78 240例对照),以及外显子组测序项目和早发性心肌梗死(ESP EOMI;4703例病例和5090例对照)数据集,以确定CCR2、CCR5或CX3CR1的常见、低频和罕见变异与CAD和MI之间的关系。我们没有发现任何与CAD或MI相关的变异。然后,我们通过巴基斯坦心肌梗死风险研究(PROMIS;9058例和8379例对照),确定了6个与MI相关的变体,包括CX3CR1 V249I。最后,对欧洲HapMap估算的糖尿病遗传复制和荟萃分析(图)、全球脂质遗传联盟(GLGC)、人体测量性状遗传调查(GIANT)和葡萄糖和胰岛素相关性状联盟(MAGIC)数据集的再分析显示,尽管PROMIS中的3个单核苷酸多态性与II型糖尿病相关,但与糖代谢性状没有关联。结论:在大型欧洲血统队列中,趋化因子受体变异与冠心病、心肌梗死或糖代谢特征无关。在南亚队列中,我们发现了单核苷酸多态性与心肌梗死和II型糖尿病的关联,但这些在欧洲血统队列中没有显著性。这些发现表明需要对南亚人进行更大规模的研究,但排除了与欧洲人冠心病和糖代谢特征有临床意义的关联。
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引用次数: 17
Spectrum and Prevalence of CALM1-, CALM2-, and CALM3-Encoded Calmodulin Variants in Long QT Syndrome and Functional Characterization of a Novel Long QT Syndrome–Associated Calmodulin Missense Variant, E141G 长QT综合征中CALM1-, CALM2-和cal3编码的钙调蛋白变异的频谱和患病率以及一种新的长QT综合征相关钙调蛋白错sense变异E141G的功能特征
Q Medicine Pub Date : 2016-03-11 DOI: 10.1161/CIRCGENETICS.115.001323
Nicole J Boczek, N. Gómez-Hurtado, D. Ye, Melissa L Calvert, D. Tester, D. O. Kryshtal, H. Hwang, Christopher N. Johnson, W. Chazin, Christina G Loporcaro, M. Shah, Andrew L. Papez, Y. Lau, R. Kanter, B. Knollmann, M. Ackerman
Background—Calmodulin (CaM) is encoded by 3 genes, CALM1, CALM2, and CALM3, all of which harbor pathogenic variants linked to long QT syndrome (LQTS) with early and severe expressivity. These LQTS-causative variants reduce CaM affinity to Ca2+ and alter the properties of the cardiac L-type calcium channel (CaV1.2). CaM also modulates NaV1.5 and the ryanodine receptor, RyR2. All these interactions may play a role in disease pathogenesis. Here, we determine the spectrum and prevalence of pathogenic CaM variants in a cohort of genetically elusive LQTS, and functionally characterize the novel variants. Methods and Results—Thirty-eight genetically elusive LQTS cases underwent whole-exome sequencing to identify CaM variants. Nonsynonymous CaM variants were over-represented significantly in this heretofore LQTS cohort (13.2%) compared with exome aggregation consortium (0.04%; P<0.0001). When the clinical sequelae of these 5 CaM-positive cases were compared with the 33 CaM-negative cases, CaM-positive cases had a more severe phenotype with an average age of onset of 10 months, an average corrected QT interval of 676 ms, and a high prevalence of cardiac arrest. Functional characterization of 1 novel variant, E141G-CaM, revealed an 11-fold reduction in Ca2+-binding affinity and a functionally dominant loss of inactivation in CaV1.2, mild accentuation in NaV1.5 late current, but no effect on intracellular RyR2-mediated calcium release. Conclusions—Overall, 13% of our genetically elusive LQTS cohort harbored nonsynonymous variants in CaM. Genetic testing of CALM1-3 should be pursued for individuals with LQTS, especially those with early childhood cardiac arrest, extreme QT prolongation, and a negative family history.
钙调蛋白(calmodulin, CaM)由CALM1、CALM2和CALM3 3个基因编码,它们都含有与长QT综合征(LQTS)相关的致病变异,具有早期和严重的表达性。这些lqts致病变异降低了CaM对Ca2+的亲和力,并改变了心脏l型钙通道的特性(CaV1.2)。CaM也调节NaV1.5和ryanodine受体RyR2。所有这些相互作用都可能在疾病发病机制中发挥作用。在这里,我们确定了在遗传上难以捉摸的LQTS队列中致病性CaM变异的频谱和患病率,并对新变异进行了功能表征。方法和结果:38例遗传上难以捉摸的LQTS病例进行了全外显子组测序以鉴定CaM变异。在LQTS队列中,非同义CaM变体(13.2%)与外显子组聚集联合体(0.04%;P < 0.0001)。当将这5例cam阳性病例的临床后遗症与33例cam阴性病例进行比较时,cam阳性病例的表型更为严重,平均发病年龄为10个月,平均校正QT间期为676 ms,心脏骤停发生率较高。1个新变体E141G-CaM的功能特征显示,Ca2+结合亲和力降低了11倍,在CaV1.2中功能上主要失活,在NaV1.5晚期电流中轻度加重,但对细胞内ryr2介导的钙释放没有影响。结论:总体而言,在我们的遗传上难以捉摸的LQTS队列中,有13%的人在CaM中存在非同义变体。LQTS患者应进行CALM1-3基因检测,特别是那些儿童早期心脏骤停、QT间期极度延长和阴性家族史的患者。
{"title":"Spectrum and Prevalence of CALM1-, CALM2-, and CALM3-Encoded Calmodulin Variants in Long QT Syndrome and Functional Characterization of a Novel Long QT Syndrome–Associated Calmodulin Missense Variant, E141G","authors":"Nicole J Boczek, N. Gómez-Hurtado, D. Ye, Melissa L Calvert, D. Tester, D. O. Kryshtal, H. Hwang, Christopher N. Johnson, W. Chazin, Christina G Loporcaro, M. Shah, Andrew L. Papez, Y. Lau, R. Kanter, B. Knollmann, M. Ackerman","doi":"10.1161/CIRCGENETICS.115.001323","DOIUrl":"https://doi.org/10.1161/CIRCGENETICS.115.001323","url":null,"abstract":"Background—Calmodulin (CaM) is encoded by 3 genes, CALM1, CALM2, and CALM3, all of which harbor pathogenic variants linked to long QT syndrome (LQTS) with early and severe expressivity. These LQTS-causative variants reduce CaM affinity to Ca2+ and alter the properties of the cardiac L-type calcium channel (CaV1.2). CaM also modulates NaV1.5 and the ryanodine receptor, RyR2. All these interactions may play a role in disease pathogenesis. Here, we determine the spectrum and prevalence of pathogenic CaM variants in a cohort of genetically elusive LQTS, and functionally characterize the novel variants. Methods and Results—Thirty-eight genetically elusive LQTS cases underwent whole-exome sequencing to identify CaM variants. Nonsynonymous CaM variants were over-represented significantly in this heretofore LQTS cohort (13.2%) compared with exome aggregation consortium (0.04%; P<0.0001). When the clinical sequelae of these 5 CaM-positive cases were compared with the 33 CaM-negative cases, CaM-positive cases had a more severe phenotype with an average age of onset of 10 months, an average corrected QT interval of 676 ms, and a high prevalence of cardiac arrest. Functional characterization of 1 novel variant, E141G-CaM, revealed an 11-fold reduction in Ca2+-binding affinity and a functionally dominant loss of inactivation in CaV1.2, mild accentuation in NaV1.5 late current, but no effect on intracellular RyR2-mediated calcium release. Conclusions—Overall, 13% of our genetically elusive LQTS cohort harbored nonsynonymous variants in CaM. Genetic testing of CALM1-3 should be pursued for individuals with LQTS, especially those with early childhood cardiac arrest, extreme QT prolongation, and a negative family history.","PeriodicalId":48940,"journal":{"name":"Circulation-Cardiovascular Genetics","volume":"9 1","pages":"136–146"},"PeriodicalIF":0.0,"publicationDate":"2016-03-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1161/CIRCGENETICS.115.001323","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"64397428","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 98
Exome Sequencing Identified a Splice Site Mutation in FHL1 that Causes Uruguay Syndrome, an X-Linked Disorder With Skeletal Muscle Hypertrophy and Premature Cardiac Death 外显子组测序发现FHL1剪接位点突变导致乌拉圭综合征,一种骨骼肌肥大和心脏性过早死亡的x连锁疾病
Q Medicine Pub Date : 2016-03-01 DOI: 10.1161/CIRCGENETICS.115.001193
Yuan Xue, B. Schoser, Aliz R. Rao, R. Quadrelli, A. Vaglio, Verena Rupp, Christine Beichler, S. Nelson, Gudrun Schapacher-Tilp, C. Windpassinger, W. Wilcox
Background—Previously, we reported a rare X-linked disorder, Uruguay syndrome in a single family. The main features are pugilistic facies, skeletal deformities, and muscular hypertrophy despite a lack of exercise and cardiac ventricular hypertrophy leading to premature death. Methods and Results—An ≈19 Mb critical region on X chromosome was identified through identity-by-descent analysis of 3 affected males. Exome sequencing was conducted on one affected male to identify the disease-causing gene and variant. A splice site variant (c.502-2A>G) in the FHL1 gene was highly suspicious among other candidate genes and variants. FHL1A is the predominant isoform of FHL1 in cardiac and skeletal muscle. Sequencing cDNA showed the splice site variant led to skipping of exons 6 of the FHL1A isoform, equivalent to the FHL1C isoform. Targeted analysis showed that this splice site variant cosegregated with disease in the family. Western blot and immunohistochemical analysis of muscle from the proband showed a significant decrease in protein expression of FHL1A. Real-time polymerase chain reaction analysis of different isoforms of FHL1 demonstrated that the FHL1C is markedly increased. Conclusions—Mutations in the FHL1 gene have been reported in disorders with skeletal and cardiac myopathy but none has the skeletal or facial phenotype seen in patients with Uruguay syndrome. Our data suggest that a novel FHL1 splice site variant results in the absence of FHL1A and the abundance of FHL1C, which may contribute to the complex and severe phenotype. Mutation screening of the FHL1 gene should be considered for patients with uncharacterized myopathies and cardiomyopathies.
背景:以前,我们报道了一个罕见的x连锁疾病,乌拉圭综合征在一个家庭。其主要特征是拳击相、骨骼畸形和肌肉肥大,尽管缺乏运动和心室肥大导致过早死亡。方法与结果:通过遗传鉴定分析,在3个患病雄性的X染色体上鉴定出一个≈19 Mb的关键区域。对一名患病男性进行了外显子组测序,以确定致病基因和变异。FHL1基因的剪接位点变异(c.502-2A>G)在其他候选基因和变异中高度可疑。FHL1A是FHL1在心脏和骨骼肌中的主要亚型。cDNA测序显示,剪接位点变异导致FHL1A异构体外显子6的跳跃,相当于FHL1C异构体。有针对性的分析表明,该剪接位点变异在家族中与疾病共分离。先证者肌肉的Western blot和免疫组化分析显示FHL1A蛋白表达显著降低。不同亚型FHL1的实时聚合酶链反应分析显示,fh1c明显升高。结论:FHL1基因突变在骨骼和心肌病疾病中有报道,但没有一例出现乌拉圭综合征患者的骨骼或面部表型。我们的数据表明,一种新的FHL1剪接位点变异导致了FHL1A的缺失和FHL1C的丰富,这可能导致了复杂和严重的表型。对于非特征性肌病和心肌病患者,应考虑FHL1基因突变筛查。
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引用次数: 9
Do Genetic Factors Modify the Relationship Between Obesity and Hypertriglyceridemia?: Findings From the GLACIER and the MDC Studies 遗传因素是否改变肥胖和高甘油三酯血症之间的关系?:来自冰川和MDC研究的发现
Q Medicine Pub Date : 2016-02-10 DOI: 10.1161/CIRCGENETICS.115.001218
Ashfaq Ali, T. Varga, Ivana A. Stojkovic, Christina-Alexandra Schulz, G. Hallmans, I. Barroso, A. Poveda, F. Renström, M. Orho-Melander, P. Franks
Background—Obesity is a major risk factor for dyslipidemia, but this relationship is highly variable. Recently published data from 2 Danish cohorts suggest that genetic factors may underlie some of this variability. Methods and Results—We tested whether established triglyceride-associated loci modify the relationship of body mass index (BMI) and triglyceride concentrations in 2 Swedish cohorts (the Gene–Lifestyle Interactions and Complex Traits Involved in Elevated Disease Risk [GLACIER Study; N=4312] and the Malmö Diet and Cancer Study [N=5352]). The genetic loci were amalgamated into a weighted genetic risk score (WGRSTG) by summing the triglyceride-elevating alleles (weighted by their established marginal effects) for all loci. Both BMI and the WGRSTG were strongly associated with triglyceride concentrations in GLACIER, with each additional BMI unit (kg/m2) associated with 2.8% (P=8.4×10–84) higher triglyceride concentration and each additional WGRSTG unit with 2% (P=7.6×10–48) higher triglyceride concentration. Each unit of the WGRSTG was associated with 1.5% higher triglyceride concentrations in normal weight and 2.4% higher concentrations in overweight/obese participants (Pinteraction=0.056). Meta-analyses of results from the Swedish cohorts yielded a statistically significant WGRSTG×BMI interaction effect (Pinteraction=6.0×10–4), which was strengthened by including data from the Danish cohorts (Pinteraction=6.5×10–7). In the meta-analysis of the Swedish cohorts, nominal evidence of a 3-way interaction (WGRSTG×BMI×sex) was observed (Pinteraction=0.03), where the WGRSTG×BMI interaction was only statistically significant in females. Using protein–protein interaction network analyses, we identified molecular interactions and pathways elucidating the metabolic relationships between BMI and triglyceride-associated loci. Conclusions—Our findings provide evidence that body fatness accentuates the effects of genetic susceptibility variants in hypertriglyceridemia, effects that are most evident in females.
背景:肥胖是血脂异常的主要危险因素,但这种关系是高度可变的。最近发表的来自两个丹麦队列的数据表明,遗传因素可能是这种差异的部分原因。方法和结果:我们在2个瑞典队列中测试了已建立的甘油三酯相关基因座是否改变了体重指数(BMI)和甘油三酯浓度之间的关系(基因-生活方式相互作用和复杂性状涉及疾病风险升高[冰川研究;N=4312]和Malmö饮食与癌症研究[N=5352])。通过将所有基因座的甘油三酯升高等位基因(按其确定的边际效应加权)相加,将遗传位点合并为加权遗传风险评分(WGRSTG)。BMI和WGRSTG都与冰川中甘油三酯浓度密切相关,每增加一个BMI单位(kg/m2),甘油三酯浓度就会增加2.8% (P= 8.4×10-84),每增加一个WGRSTG单位,甘油三酯浓度就会增加2% (P= 7.6×10-48)。WGRSTG的每一单位与正常体重者甘油三酯浓度升高1.5%和超重/肥胖者甘油三酯浓度升高2.4%相关(p相互作用=0.056)。瑞典队列的meta分析结果显示了统计学上显著的WGRSTG×BMI相互作用效应(p - interaction= 6.0×10-4),丹麦队列的数据(p - interaction= 6.5×10-7)进一步加强了这一效应。在瑞典队列的荟萃分析中,观察到名义上的3-way相互作用(WGRSTG×BMI×sex)的证据(p - interaction=0.03),其中WGRSTG×BMI相互作用仅在女性中具有统计学意义。通过蛋白质-蛋白质相互作用网络分析,我们确定了分子相互作用和途径,阐明了BMI和甘油三酯相关位点之间的代谢关系。结论:我们的研究结果提供了证据,表明身体肥胖加剧了高甘油三酯血症遗传易感性变异的影响,这种影响在女性中最为明显。
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引用次数: 7
Complexities of Genetic Testing in Familial Dilated Cardiomyopathy 家族性扩张型心肌病基因检测的复杂性
Q Medicine Pub Date : 2016-02-01 DOI: 10.1161/CIRCGENETICS.115.001157
Matthew J. Wolf, Dagny Noeth, C. Rammohan, Svati H. Shah
A 59-year-old female with a personal and family history of dilated cardiomyopathy (DCM) was referred by her cardiologist for genetic testing and counseling. The patient was initially diagnosed with DCM after presenting with dyspnea and fatigue. Her symptoms also included mild bilateral pedal edema, but she denied orthopnea, paroxysmal nocturnal dyspnea, palpitations, presyncope, or syncope. An electrocardiogram showed sinus rhythm and a left bundle branch block morphology (Figure 1). She underwent a gadolinium-enhanced cardiac magnetic resonance imaging that showed an enlarged left ventricle (LV; internal diameter at end diastole and systole were 6.5 cm and 5.4 cm, respectively), and the LV ejection fraction was ≈25%. Abnormal septal wall motion consistent with a bundle branch block was noted. All other walls of the LV were diffusely hypokinetic. Mild midmyocardial hyperenhancement suggestive of idiopathic DCM was present. The right ventricle was normal in size and function. There were no valvular abnormalities. Left heart catheterization showed no significant epicardial coronary artery disease. She was treated with a β-adrenergic antagonist, an angiotensinogen inhibitor, a mineralocorticoid antagonist, and a loop diuretic. Her symptoms improved; however, the LV remained enlarged and had poor systolic function with an ejection fraction of ≈30%. She subsequently underwent biventricular implantable cardioverter-defibrillator implantation.Figure 1. ECG of proband. Heart rate (HR) in bpm, P–R interval (PR) in milliseconds (ms), QRS duration (QRS) in ms, Q–T interval (QT) in ms, and corrected Q–T interval using Bazett formula (QTc) in ms are shown. aVF indicates augmented vector foot; aVL, augmented vector left; and aVR, augmented vector right.At the time of her initial diagnosis, the patient’s family history was notable for a 86-year-old mother who had atrial fibrillation and valvular heart disease; a father who died at the age of 89 years with coronary artery disease; a 59-year-old sister who had hypertension; a 50-year-old brother …
一名59岁女性,有个人和家族史扩张型心肌病(DCM),由她的心脏病专家转介进行基因检测和咨询。患者在出现呼吸困难和疲劳后最初被诊断为DCM。她的症状还包括轻度双足水肿,但她否认有矫直、阵发性夜间呼吸困难、心悸、晕厥前期或晕厥。心电图显示窦性心律和左束支阻滞形态(图1)。她接受了钆增强心脏磁共振成像,显示左心室增大(LV;舒张末期和收缩末期内径分别为6.5 cm和5.4 cm),左室射血分数≈25%。室间隔壁异常运动与束状分支阻滞一致。左室其他壁均弥漫性低动。轻度心肌中部增高提示特发性DCM。右心室大小和功能正常。无瓣膜异常。左心导管检查未见明显的心外膜冠状动脉病变。她接受β-肾上腺素能拮抗剂、血管紧张素原抑制剂、矿物皮质激素拮抗剂和环状利尿剂治疗。她的症状有所改善;然而,左室仍然增大,收缩功能差,射血分数≈30%。随后她接受了双心室植入式心律转复除颤器植入术。图1所示。先证者心电图。显示心率(HR) (bpm)、P-R间期(PR) (ms)、QRS持续时间(QRS) (ms)、Q-T间期(QT) (ms)以及用Bazett公式修正的Q-T间期(QTc) (ms)。aVF表示增广向量足;aVL,增广向量左;aVR,增广向量。在她最初诊断时,患者的家族史是一位86岁的母亲,患有心房颤动和瓣膜性心脏病;一位父亲死于冠状动脉疾病,享年89岁;59岁的高血压姐妹1例;一个50岁的哥哥……
{"title":"Complexities of Genetic Testing in Familial Dilated Cardiomyopathy","authors":"Matthew J. Wolf, Dagny Noeth, C. Rammohan, Svati H. Shah","doi":"10.1161/CIRCGENETICS.115.001157","DOIUrl":"https://doi.org/10.1161/CIRCGENETICS.115.001157","url":null,"abstract":"A 59-year-old female with a personal and family history of dilated cardiomyopathy (DCM) was referred by her cardiologist for genetic testing and counseling. The patient was initially diagnosed with DCM after presenting with dyspnea and fatigue. Her symptoms also included mild bilateral pedal edema, but she denied orthopnea, paroxysmal nocturnal dyspnea, palpitations, presyncope, or syncope. An electrocardiogram showed sinus rhythm and a left bundle branch block morphology (Figure 1). She underwent a gadolinium-enhanced cardiac magnetic resonance imaging that showed an enlarged left ventricle (LV; internal diameter at end diastole and systole were 6.5 cm and 5.4 cm, respectively), and the LV ejection fraction was ≈25%. Abnormal septal wall motion consistent with a bundle branch block was noted. All other walls of the LV were diffusely hypokinetic. Mild midmyocardial hyperenhancement suggestive of idiopathic DCM was present. The right ventricle was normal in size and function. There were no valvular abnormalities. Left heart catheterization showed no significant epicardial coronary artery disease. She was treated with a β-adrenergic antagonist, an angiotensinogen inhibitor, a mineralocorticoid antagonist, and a loop diuretic. Her symptoms improved; however, the LV remained enlarged and had poor systolic function with an ejection fraction of ≈30%. She subsequently underwent biventricular implantable cardioverter-defibrillator implantation.\u0000\u0000\u0000\u0000Figure 1. \u0000ECG of proband. Heart rate (HR) in bpm, P–R interval (PR) in milliseconds (ms), QRS duration (QRS) in ms, Q–T interval (QT) in ms, and corrected Q–T interval using Bazett formula (QTc) in ms are shown. aVF indicates augmented vector foot; aVL, augmented vector left; and aVR, augmented vector right.\u0000\u0000\u0000\u0000At the time of her initial diagnosis, the patient’s family history was notable for a 86-year-old mother who had atrial fibrillation and valvular heart disease; a father who died at the age of 89 years with coronary artery disease; a 59-year-old sister who had hypertension; a 50-year-old brother …","PeriodicalId":48940,"journal":{"name":"Circulation-Cardiovascular Genetics","volume":"9 1","pages":"95–99"},"PeriodicalIF":0.0,"publicationDate":"2016-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1161/CIRCGENETICS.115.001157","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"64397036","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Novel Genetic Loci Associated With Retinal Microvascular Diameter 与视网膜微血管直径相关的新基因位点
Q Medicine Pub Date : 2016-02-01 DOI: 10.1161/CIRCGENETICS.115.001142
R. Jensen, X. Sim, A. Smith, Xiaohui Li, J. Jakobsdóttir, Ching-Yu Cheng, Jennifer A. Brody, M. Cotch, B. McKnight, R. Klein, Jie-Jin Wang, A. Kifley, T. Harris, L. Launer, K. Taylor, B. Klein, L. Raffel, Xiang Li, M. Ikram, C. Klaver, S. J. van der Lee, U. Mutlu, A. Hofman, A. Uitterlinden, Chunyu Liu, A. Kraja, P. Mitchell, V. Gudnason, J. Rotter, E. Boerwinkle, C. V. van Duijn, B. Psaty, T. Wong
Background—There is increasing evidence that retinal microvascular diameters are associated with cardiovascular and cerebrovascular conditions. The shared genetic effects of these associations are currently unknown. The aim of this study was to increase our understanding of the genetic factors that mediate retinal vessel size. Methods and Results—This study extends previous genome-wide association study results using 24 000+ multiethnic participants from 7 discovery cohorts and 5000+ subjects of European ancestry from 2 replication cohorts. Using the Illumina HumanExome BeadChip, we investigate the association of single-nucleotide polymorphisms and variants collectively across genes with summary measures of retinal vessel diameters, referred to as the central retinal venule equivalent and the central retinal arteriole equivalent. We report 4 new loci associated with central retinal venule equivalent, one of which is also associated with central retinal arteriole equivalent. The 4 single-nucleotide polymorphisms are rs7926971 in TEAD1 (P=3.1×10−11; minor allele frequency=0.43), rs201259422 in TSPAN10 (P=4.4×10−9; minor allele frequency=0.27), rs5442 in GNB3 (P=7.0×10−10; minor allele frequency=0.05), and rs1800407 in OCA2 (P=3.4×10−8; minor allele frequency=0.05). The latter single-nucleotide polymorphism, rs1800407, was also associated with central retinal arteriole equivalent (P=6.5×10−12). Results from the gene-based burden tests were null. In phenotype look-ups, single-nucleotide polymorphism rs201255422 was associated with both systolic (P=0.001) and diastolic blood pressures (P=8.3×10−04). Conclusions—Our study expands the understanding of genetic factors influencing the size of the retinal microvasculature. These findings may also provide insight into the relationship between retinal and systemic microvascular disease.
背景:越来越多的证据表明,视网膜微血管直径与心脑血管疾病有关。这些关联的共同遗传效应目前尚不清楚。这项研究的目的是增加我们对介导视网膜血管大小的遗传因素的理解。方法和结果:该研究扩展了先前全基因组关联研究的结果,使用了来自7个发现队列的24000多种族参与者和来自2个复制队列的5000多欧洲血统受试者。使用Illumina HumanExome BeadChip,我们研究了跨基因的单核苷酸多态性和变异与视网膜血管直径的综合测量的关系,称为视网膜中央小静脉当量和视网膜中央小动脉当量。我们报告了4个与视网膜中央小静脉当量相关的新位点,其中一个也与视网膜中央小动脉当量相关。TEAD1的4个单核苷酸多态性为rs7926971 (P=3.1×10−11;次要等位基因频率=0.43),rs201259422在TSPAN10中(P=4.4×10−9;次要等位基因频率=0.27),GNB3中rs5442 (P=7.0×10−10;次要等位基因频率=0.05),OCA2中rs1800407 (P=3.4×10−8;次要等位基因频率=0.05)。后一种单核苷酸多态性rs1800407也与视网膜中央小动脉当量相关(P=6.5×10−12)。基于基因的负担试验结果为零。在表型查找中,单核苷酸多态性rs201255422与收缩压(P=0.001)和舒张压(P=8.3×10−04)相关。结论:我们的研究扩大了对影响视网膜微血管大小的遗传因素的认识。这些发现也可能为视网膜和全身微血管疾病之间的关系提供见解。
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引用次数: 26
Elevated Plasma Cardiac Troponin T Levels Caused by Skeletal Muscle Damage in Pompe Disease 庞贝病骨骼肌损伤引起血浆心肌肌钙蛋白T水平升高
Q Medicine Pub Date : 2016-02-01 DOI: 10.1161/CIRCGENETICS.115.001322
S. Wens, G. Schaaf, M. Michels, M. Kruijshaar, T. J. van Gestel, Stijn L. M. in ’t Groen, J. Pijnenburg, D. Dekkers, Jeroen A. A. Demmers, L. Verdijk, E. Brusse, R. V. van Schaik, A. T. van der Ploeg, P. V. van Doorn, W. Pijnappel
Background—Elevated plasma cardiac troponin T (cTnT) levels in patients with neuromuscular disorders may erroneously lead to the diagnosis of acute myocardial infarction or myocardial injury. Methods and Results—In 122 patients with Pompe disease, the relationship between cTnT, cardiac troponin I, creatine kinase (CK), CK-myocardial band levels, and skeletal muscle damage was assessed. ECG and echocardiography were used to evaluate possible cardiac disease. Patients were divided into classic infantile, childhood-onset, and adult-onset patients. cTnT levels were elevated in 82% of patients (median 27 ng/L, normal values <14 ng/L). Cardiac troponin I levels were normal in all patients, whereas CK-myocardial band levels were increased in 59% of patients. cTnT levels correlated with CK levels in all 3 subgroups (P<0.001). None of the abnormal ECGs recorded in 21 patients were indicative of acute myocardial infarction, and there were no differences in cTnT levels between patients with and without (n=90) abnormalities on ECG (median 28 ng/L in both groups). The median left ventricular mass index measured with echocardiography was normal in all the 3 subgroups. cTnT mRNA expression in skeletal muscle was not detectable in controls but was strongly induced in patients with Pompe disease. cTnT protein was identified by mass spectrometry in patient-derived skeletal muscle tissue. Conclusions—Elevated plasma cTnT levels in patients with Pompe disease are associated with skeletal muscle damage, rather than acute myocardial injury. Increased cTnT levels in Pompe disease and likely other neuromuscular disorders should be interpreted with caution to avoid unnecessary cardiac interventions.
背景:神经肌肉疾病患者血浆心肌肌钙蛋白T (cTnT)水平升高可能导致急性心肌梗死或心肌损伤的错误诊断。方法与结果:对122例Pompe病患者进行cTnT、心肌肌钙蛋白I、肌酸激酶(CK)、CK-心肌带水平与骨骼肌损伤的关系评估。使用心电图和超声心动图评估可能的心脏疾病。患者分为典型的婴儿期、儿童期和成年期。82%的患者cTnT水平升高(中位27 ng/L,正常值<14 ng/L)。所有患者的心肌肌钙蛋白I水平均正常,而59%的患者ck -心肌带水平升高。在所有3个亚组中,cTnT水平与CK水平相关(P<0.001)。21例患者的心电图异常均未提示急性心肌梗死,且伴有和未伴有心电图异常的患者(n=90)的cTnT水平无差异(两组中位值均为28 ng/L)。超声心动图测量的左室质量指数中位数在3个亚组中均正常。cTnT mRNA在骨骼肌中的表达在对照组中未检测到,但在Pompe病患者中被强烈诱导。通过质谱法在患者骨骼肌组织中鉴定了cTnT蛋白。结论:Pompe病患者血浆cTnT水平升高与骨骼肌损伤有关,而非急性心肌损伤。庞贝病和其他可能的神经肌肉疾病患者cTnT水平升高应谨慎解释,以避免不必要的心脏干预。
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引用次数: 64
期刊
Circulation-Cardiovascular Genetics
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