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PRINCIPAL GEODESIC ANALYSIS BOUNDARY DELINEATION WITH SUPERPIXEL-BASED CONSTRAINTS 基于超像素约束的主测地线分析边界划分
IF 0.9 4区 计算机科学 Q4 IMAGING SCIENCE & PHOTOGRAPHIC TECHNOLOGY Pub Date : 2017-12-18 DOI: 10.5566/IAS.1712
Mateusz Baran, Z. Tabor
In this paper an algorithm for accurate delineation of object boundaries is proposed. The method employs a superpixel algorithm to obtain an oversegmentation of the input image, used as a constraint in the task. A shape model is built by applying Principal Geodesic Analysis on angular representation of automatically placed uniformly distant landmark points. The shape model is used to detect the boundaries of an object on a given image by iterative elongation of a partial boundary along borders of superpixels. Contrary to many state-of-the-art methods, the proposed approach does not need an initial boundary. The algorithm was tested on two natural and two synthetic sets of images. Mean Dice coefficients between 0.91 and 0.97 were obtained. In almost all cases the object was found. In areas of relatively high gradient magnitude the borders are delineated very accurately, though further research is needed to improve the accuracy in areas of low gradient magnitude and automatically select the parameters of the proposed error function.
本文提出了一种精确描绘目标边界的算法。该方法采用超像素算法对输入图像进行过分割,作为任务的约束条件。采用主测地线分析法对自动均匀放置的距离点进行角表示,建立形状模型。该形状模型通过沿超像素边界的部分边界迭代延伸来检测给定图像上物体的边界。与许多最先进的方法相反,所提出的方法不需要初始边界。在两组自然图像和两组合成图像上对该算法进行了测试。平均Dice系数在0.91 ~ 0.97之间。在几乎所有的案例中,物品都被找到了。在梯度值较高的区域,边界的描绘非常准确,但在梯度值较低的区域,需要进一步研究提高精度,并自动选择所提出的误差函数的参数。
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引用次数: 3
STEREOLOGY, AN UNBIASED METHODOLOGICAL APPROACH TO STUDY PLANT ANATOMY AND CYTOLOGY: PAST, PRESENT AND FUTURE 立体学,一种不偏不倚的方法来研究植物解剖学和细胞学:过去,现在和未来
IF 0.9 4区 计算机科学 Q4 IMAGING SCIENCE & PHOTOGRAPHIC TECHNOLOGY Pub Date : 2017-12-18 DOI: 10.5566/IAS.1848
L. Kubínová, B. Radochová, Z. Lhotáková, Zuzana Kubínová, J. Albrechtová
This review presents an historical overview of stereological methods used for the quantitative evaluation of plant anatomical and cytological structures. It includes the origins of these methods up to the most recent developments such as the application of stereology based on 3D images. We focus especially on leaf, as the vast majority of studies of plant microscopic structure examine this organ. An overview of plant cell ultrastructure measurements as well as plant anatomical characteristics (e.g. plant tissue volume density, internal leaf surface area, number and mean size of mesophyll cells and chloroplast number), which were estimated by stereological methods most frequently, is presented. We emphasize the importance of proper sampling needed for unbiased measurements. Furthermore, we mention other methods used for plant morphometric studies and briefly discuss their relevance, precision, unbiasedness and efficiency in comparison with unbiased stereology. Finally, we discuss reasons for the sparse use of stereology in plant anatomy and consider the future of stereology in plant research.
本文综述了用于植物解剖和细胞学结构定量评价的立体学方法的历史概况。它包括这些方法的起源,直到最近的发展,如基于3D图像的立体学应用。我们特别关注叶子,因为绝大多数植物微观结构的研究都是研究这个器官的。概述了植物细胞的超微结构测量以及植物的解剖特征(如植物组织体积密度、叶内表面积、叶肉细胞的数量和平均大小、叶绿体数量),这是最常用的立体学方法估计。我们强调对无偏测量所需的适当抽样的重要性。此外,我们还提到了用于植物形态计量学研究的其他方法,并简要讨论了它们与无偏立体学相比的相关性、准确性、无偏性和效率。最后,我们讨论了体视学在植物解剖学中应用较少的原因,并展望了体视学在植物研究中的未来。
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引用次数: 8
CURVATURE APPROXIMATION FROM PARABOLIC SECTORS 抛物线扇形的曲率近似
IF 0.9 4区 计算机科学 Q4 IMAGING SCIENCE & PHOTOGRAPHIC TECHNOLOGY Pub Date : 2017-12-18 DOI: 10.5566/ias.1702
X. Gual-Arnau, M. V. I. Gual, J. Monterde
We propose an invariant three-point curvature approximation for plane curves based on the arc of a parabolic sector, and we analyze how closely this approximation is to the true curvature of the curve. We compare our results with the obtained with other invariant three-point curvature approximations. Finally, an application is discussed.
我们提出了基于抛物线扇形弧线的平面曲线的不变三点曲率近似,并分析了这种近似与曲线的真实曲率的接近程度。我们将所得结果与用其他不变三点曲率近似得到的结果进行了比较。最后,讨论了一个应用。
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引用次数: 3
PERCOLATION TRANSITION AND TOPOLOGY 渗透过渡和拓扑
IF 0.9 4区 计算机科学 Q4 IMAGING SCIENCE & PHOTOGRAPHIC TECHNOLOGY Pub Date : 2017-06-23 DOI: 10.5566/IAS.1573
P. Jouannot-Chesney, J. Jernot, C. Lantuéjoul
A number of bidimensional random structures with increasing densities are simulated to explore possible links between Euler-Poincare characteristic (EPC), or connectivity, and percolation threshold. For each structure model, the percolation threshold is compared with a number of typical points (extrema, zero crossings...) of the EPC curve. From these exercises, it can be concluded that the percolation threshold cannot be generally predicted using the evolution of the EPC.
模拟了一些密度增加的二维随机结构,以探索欧拉-庞加莱特征(EPC)或连通性与渗透阈值之间的可能联系。对于每个结构模型,将渗透阈值与EPC曲线的一些典型点(极值点、零点点等)进行比较。从这些练习中可以得出结论,渗透阈值不能用EPC的演变来一般预测。
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引用次数: 2
AUTOMATIC LUNG NODULE DETECTION BASED ON STATISTICAL REGION MERGING AND SUPPORT VECTOR MACHINES 基于统计区域合并和支持向量机的肺结节自动检测
IF 0.9 4区 计算机科学 Q4 IMAGING SCIENCE & PHOTOGRAPHIC TECHNOLOGY Pub Date : 2017-06-23 DOI: 10.5566/IAS.1679
Elaheh Aghabalaei Khordehchi, A. Ayatollahi, M. Daliri
Lung cancer is one of the most common diseases in the world that can be treated if the lung nodules are detected in their early stages of growth. This study develops a new framework for computer-aided detection of pulmonary nodules thorough a fully-automatic analysis of Computed Tomography (CT) images. In the present work, the multi-layer CT data is fed into a pre-processing step that exploits an adaptive diffusion-based smoothing algorithm in which the parameters are automatically tuned using an adaptation technique. After multiple levels of morphological filtering, the Regions of Interest (ROIs) are extracted from the smoothed images. The Statistical Region Merging (SRM) algorithm is applied to the ROIs in order to segment each layer of the CT data. Extracted segments in consecutive layers are then analyzed in such a way that if they intersect at more than a predefined number of pixels, they are labeled with a similar index. The boundaries of the segments in adjacent layers which have the same indices are then connected together to form three-dimensional objects as the nodule candidates. After extracting four spectral, one morphological, and one textural feature from all candidates, they are finally classified into nodules and non-nodules using the Support Vector Machine (SVM) classifier. The proposed framework has been applied to two sets of lung CT images and its performance has been compared to that of nine other competing state-of-the-art methods. The considerable efficiency of the proposed approach has been proved quantitatively and validated by clinical experts as well.
肺癌是世界上最常见的疾病之一,如果在其生长的早期阶段发现肺结节,就可以治疗。本研究通过计算机断层扫描(CT)图像的全自动分析,开发了一种新的肺结节计算机辅助检测框架。在目前的工作中,多层CT数据被送入预处理步骤,该步骤利用自适应扩散平滑算法,其中参数使用自适应技术自动调整。经过多级形态学滤波,从平滑后的图像中提取感兴趣区域(roi)。将统计区域合并(SRM)算法应用于roi,对CT数据的每一层进行分割。然后对连续层中提取的片段进行分析,如果它们相交的像素数超过预定义的像素数,则用类似的索引标记它们。相邻层中具有相同指标的段的边界然后连接在一起形成三维物体作为结节候选者。在提取4个光谱特征、1个形态特征和1个纹理特征后,利用支持向量机(SVM)分类器将它们分类为结节和非结节。所提出的框架已应用于两组肺部CT图像,其性能已与其他九种竞争的最先进的方法进行了比较。所提出的方法的相当高的效率已被定量证明和临床专家验证。
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引用次数: 15
A GENERALIZED NON-LINEAR METHOD FOR DISTORTION CORRECTION AND TOP-DOWN VIEW CONVERSION OF FISH EYE IMAGES 一种广义非线性的鱼眼图像畸变校正和自上而下视图转换方法
IF 0.9 4区 计算机科学 Q4 IMAGING SCIENCE & PHOTOGRAPHIC TECHNOLOGY Pub Date : 2017-06-23 DOI: 10.5566/IAS.1660
V. Bawa, Krishan Kumar, Vinay Kumar
Advanced driver assistance systems (ADAS) have been developed to automate and modify vehicles for safety and better driving experience. Among all computer vision modules in ADAS, 360-degree surround view generation of immediate surroundings of the vehicle is very important, due to application in on-road traffic assistance, parking assistance etc. This paper presents a novel algorithm for fast and computationally efficient transformation of input fisheye images into required top down view. This paper also presents a generalized framework for generating top down view of images captured by cameras with fish-eye lenses mounted on vehicles, irrespective of pitch or tilt angle. The proposed approach comprises of two major steps, viz. correcting the fish-eye lens images to rectilinear images, and generating top-view perspective of the corrected images. The images captured by the fish-eye lens possess barrel distortion, for which a nonlinear and non-iterative method is used. Thereafter, homography is used to obtain top-down view of corrected images. This paper also targets to develop surroundings of the vehicle for wider distortion less field of view and camera perspective independent top down view, with minimum computation cost which is essential due to limited computation power on vehicles.
先进驾驶辅助系统(ADAS)已被开发出来,以实现车辆的自动化和改装,以提高安全性和更好的驾驶体验。在ADAS的所有计算机视觉模块中,车辆周围环境的360度环视生成非常重要,主要应用于道路交通辅助、停车辅助等领域。本文提出了一种将输入的鱼眼图像快速高效地转换为所需的自上而下视图的新算法。本文还提出了一个通用框架,用于生成由安装在车辆上的带有鱼眼镜头的相机捕获的图像的自顶向下视图,无论俯仰或倾斜角度如何。提出的方法包括两个主要步骤,即将鱼眼镜头图像校正为直线图像,并生成校正后图像的俯视图。鱼眼透镜捕获的图像具有桶形畸变,采用非线性非迭代方法求解。然后,利用单应性获得校正后图像的自上而下视图。本文的目标是开发更宽的无畸变视场和相机视角无关的自上而下视图的车辆周围环境,这是由于车辆计算能力有限而必不可少的最小计算成本。
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引用次数: 3
THE CAVALIERI ESTIMATOR WITH UNEQUAL SECTION SPACING REVISITED 重新讨论不等截面间距的卡瓦列里估计量
IF 0.9 4区 计算机科学 Q4 IMAGING SCIENCE & PHOTOGRAPHIC TECHNOLOGY Pub Date : 2017-06-23 DOI: 10.5566/IAS.1723
M. Kiderlen, K. Dorph‐Petersen
The Cavalieri method allows to estimate the volume of a compact object from area measurements in equidistant parallel planar sections. However, the spacing and thickness of sections can be quite irregular in applications. Recent publications have thus focused on the effect of random variability in section spacing, showing that the classical Cavalieri estimator is still unbiased when the stack of parallel planes is stationary, but that the existing variance approximations must be adjusted. The present paper considers the special situation, where the distances between consecutive section planes can be measured and thus where Cavalieri’s estimator can be replaced by a quadrature rule with randomized sampling points. We show that, under mild conditions, the trapezoid rule and Simpson’s rule lead to unbiased volume estimators and give simulation results that indicate that a considerable variance reduction compared to the generalized Cavalieri estimator can be achieved.
卡瓦列里方法允许通过等距平行平面剖面的面积测量来估计紧凑物体的体积。然而,截面的间距和厚度在应用中可能是相当不规则的。因此,最近的出版物集中在截面间距随机变异性的影响上,表明当平行平面的堆栈是平稳的时,经典的Cavalieri估计仍然是无偏的,但现有的方差近似必须进行调整。本文考虑了一种特殊情况,在这种情况下,连续截面平面之间的距离可以测量,因此卡瓦列里估计量可以用随机抽样点的正交规则代替。我们证明,在温和的条件下,梯形规则和辛普森规则导致无偏体积估计,并给出仿真结果表明,与广义Cavalieri估计相比,可以实现相当大的方差减小。
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引用次数: 2
ON THE PRECISION OF THE NUCLEATOR 关于成核器的精度
IF 0.9 4区 计算机科学 Q4 IMAGING SCIENCE & PHOTOGRAPHIC TECHNOLOGY Pub Date : 2017-06-23 DOI: 10.5566/IAS.1671
Javier González-Villa, M. Cruz, L. Cruz-Orive
The nucleator is a design unbiased method of local stereology for estimating the volume of a bounded object. The only information required lies in the intersection of the object with an isotropic random ray emanating from a fixed point (called the pivotal point) associated with the object. For instance, the volume of a neuron can be estimated from a random ray emanating from its nucleolus. The nucleator is extensively used in biosciences because it is efficient and easy to apply. The estimator variance can be reduced by increasing the number of rays. In an earlier paper a systematic sampling design was proposed, and theoretical variance predictors were derived, for the corresponding volume estimator. Being the only variance predictors hitherto available for the nucleator, our basic goal was to check their statistical performance by means of Monte Carlo resampling on computer reconstructions of real objects. As a plus, the empirical distribution of the volume estimator revealed statistical properties of practical relevance.
核子是一种局部立体学的设计无偏方法,用于估计有界物体的体积。唯一需要的信息是物体与从与物体相关的固定点(称为枢纽点)发出的各向同性随机射线的交点。例如,神经元的体积可以通过从其核仁发出的随机射线来估计。成核剂因其高效、易于应用而广泛应用于生物科学领域。估计器的方差可以通过增加射线的数量来减小。在较早的一篇论文中,提出了系统抽样设计,并推导了相应体积估计的理论方差预测因子。作为迄今为止唯一可用于成核器的方差预测器,我们的基本目标是通过对真实物体的计算机重建进行蒙特卡罗重采样来检查它们的统计性能。另外,体积估计器的经验分布揭示了实际相关的统计特性。
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引用次数: 5
COMPARISON OF ULTRASOUND IMAGE FILTERING METHODS BY MEANS OF MULTIVARIABLE KURTOSIS 超声图像多变量峰度滤波方法的比较
IF 0.9 4区 计算机科学 Q4 IMAGING SCIENCE & PHOTOGRAPHIC TECHNOLOGY Pub Date : 2017-06-23 DOI: 10.5566/IAS.1639
Mariusz Nieniewski, Pawel Zajaczkowski
Comparison of the quality of despeckled US medical images is complicated because there is no image of a human body that would be free of speckles and could serve as a reference. A number of various image metrics are currently used for comparison of filtering methods; however, they do not satisfactorily represent the visual quality of images and medical expert’s satisfaction with images. This paper proposes an innovative use of relative multivariate kurtosis for the evaluation of the most important edges in an image. Multivariate kurtosis allows one to introduce an order among the filtered images and can be used as one of the metrics for image quality evaluation. At present there is no method which would jointly consider individual metrics. Furthermore, these metrics are typically defined by comparing the noisy original and filtered images, which is incorrect since the noisy original cannot serve as a golden standard. In contrast to this, the proposed kurtosis is the absolute measure, which is calculated independently of any reference image and it agrees with the medical expert’s satisfaction to a large extent. The paper presents a numerical procedure for calculating kurtosis and describes results of such calculations for a computer-generated noisy image, images of a general purpose phantom and a cyst phantom, as well as real-life images of thyroid and carotid artery obtained with SonixTouch ultrasound machine. 16 different methods of image despeckling are compared via kurtosis. The paper shows that visually more satisfactory despeckling results are associated with higher kurtosis, and to a certain degree kurtosis can be used as a single metric for evaluation of image quality.
比较无斑点的美国医学图像的质量是复杂的,因为没有没有斑点的人体图像可以作为参考。许多不同的图像度量目前用于过滤方法的比较;然而,它们不能令人满意地代表图像的视觉质量和医学专家对图像的满意度。本文提出了一种创新的使用相对多元峰度来评估图像中最重要的边缘。多变量峰度允许人们在过滤后的图像中引入一个顺序,并且可以用作图像质量评估的指标之一。目前还没有一种方法可以联合考虑各个指标。此外,这些指标通常是通过比较有噪声的原始图像和过滤后的图像来定义的,这是不正确的,因为有噪声的原始图像不能作为黄金标准。与此相反,提出的峰度是绝对度量,它是独立于任何参考图像计算的,在很大程度上符合医学专家的满意度。本文给出了一个计算峰度的数值过程,并描述了计算机生成的噪声图像、通用幻像和囊肿幻像的计算结果,以及用SonixTouch超声机获得的甲状腺和颈动脉的真实图像。通过峰度分析比较了16种不同的图像去斑方法。本文表明,视觉上满意的去斑结果与较高的峰度相关,峰度在一定程度上可以作为评价图像质量的单一指标。
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引用次数: 7
STEREOLOGICAL EVIDENCE FOR DE/RE-GENERATION OF MYELIN SHEATHS IN AGED BRAIN WHITE MATTER OF FEMALE RATS 雌性大鼠老龄脑白质髓鞘脱除/再生的体视学证据
IF 0.9 4区 计算机科学 Q4 IMAGING SCIENCE & PHOTOGRAPHIC TECHNOLOGY Pub Date : 2017-06-23 DOI: 10.5566/IAS.1436
Chen Li, Lei Zhang, Qiaoya Ma, Yong Tang, Ya He
Studies have provided qualitative evidence of de-myelination and re-myelination in aged brain white matter. However, there have been no quantitative evidences of degeneration and regeneration of myelin sheaths in white matter. The present study was designed to investigate the quantitative changes in myelin sheaths using unbiased stereological techniques and qualitative changes using electron microscopy in aged brain white matter. Results obtained showed that in brain white matter, the total volume of myelin sheaths of old-age female rats was not significantly different from that of young female rats, but the total length of myelinated fibers in old female rats was significantly decreased by 46.1% when compared with that of young female rats. Myelin sheath volume per unit length of myelinated fibers of old female rats was significantly increased by 43.4% compared with that of young female rats. The mean thickness of myelin sheaths in the white matter of the old rats was significantly increased by 33.3%, when compared with that of young female rats. In age-related loss of myelinated fibers, most fibers had diameters less than 1.4 μm, and myelin sheath thicknesses less than 0.14 μm, but the length of myelinated fibers with diameters more than 0.6 μm and myelin sheath thicknesses more than 0.22 μm increased with age. Myelinated fibers with ratios of myelin sheath thicknesses to myelinated fiber external diameter less than 0.21 were significantly lower in elderly rats than in young rats. However, the total length of myelinated fibers with ratios of myelin sheath thicknesses to myelinated fiber external diameter more than 0.23 was higher in aged rats than in young rats. About 6.58% of myelin sheaths showed degenerative alterations, while 0.88% myelin sheaths showed regenerative alterations. This study provides stereological evidence not only for degeneration but also regeneration of myelin sheaths in aged white matter.
研究提供了老年脑白质脱髓鞘和再髓鞘形成的定性证据。然而,没有定量的证据表明髓鞘在白质中退化和再生。本研究旨在利用无偏体视技术研究老年脑白质髓鞘的定量变化和电子显微镜下的质变。结果表明,老年雌性大鼠脑白质髓鞘总量与年轻雌性大鼠无显著差异,但老年雌性大鼠髓鞘总长度较年轻雌性大鼠明显减少46.1%。老龄雌性大鼠单位长度髓鞘体积比年轻雌性大鼠显著增加43.4%。老龄大鼠脑白质髓鞘平均厚度较年轻雌性大鼠显著增加33.3%。在年龄相关性的髓鞘纤维损失中,大多数纤维直径小于1.4 μm,髓鞘厚度小于0.14 μm,但直径大于0.6 μm的髓鞘长度和髓鞘厚度大于0.22 μm的髓鞘长度随着年龄的增长而增加。老年大鼠髓鞘厚度与髓鞘纤维外径之比小于0.21的有髓纤维明显低于年轻大鼠。老年大鼠髓鞘厚度与髓鞘纤维外径之比大于0.23的有髓纤维总长度高于幼年大鼠。约6.58%的髓鞘发生退行性改变,0.88%的髓鞘发生再生改变。本研究不仅为老年白质髓鞘的退化和再生提供了体视学证据。
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引用次数: 4
期刊
Image Analysis & Stereology
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