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Identifying Nonlinear Dynamics with High Confidence from Sparse Data 从稀疏数据中识别高可信度非线性动力学
IF 2.1 4区 数学 Q2 MATHEMATICS, APPLIED Pub Date : 2024-01-24 DOI: 10.1137/23m1560252
Bogdan Batko, Marcio Gameiro, Ying Hung, William Kalies, Konstantin Mischaikow, Ewerton Vieira
SIAM Journal on Applied Dynamical Systems, Volume 23, Issue 1, Page 383-409, March 2024.
Abstract.We introduce a novel procedure that, given sparse data generated from a stationary deterministic nonlinear dynamical system, can characterize specific local and/or global dynamic behavior with rigorous probability guarantees. More precisely, the sparse data is used to construct a statistical surrogate model based on a Gaussian process (GP). The dynamics of the surrogate model is interrogated using combinatorial methods and characterized using algebraic topological invariants (Conley index). The GP predictive distribution provides a lower bound on the confidence that these topological invariants, and hence the characterized dynamics, apply to the unknown dynamical system (assumed to be a sample path of the GP). The focus of this paper is on explaining the ideas, thus we restrict our examples to one-dimensional systems and show how to capture the existence of fixed points, periodic orbits, connecting orbits, bistability, and chaotic dynamics.
SIAM 应用动力系统期刊》第 23 卷第 1 期第 383-409 页,2024 年 3 月。 摘要.我们介绍了一种新的程序,给定由静态确定性非线性动力学系统生成的稀疏数据,该程序能以严格的概率保证表征特定的局部和/或全局动力学行为。更准确地说,稀疏数据用于构建基于高斯过程(GP)的统计代用模型。使用组合方法对代理模型的动态进行分析,并使用代数拓扑不变式(康利指数)对其进行表征。GP 预测分布提供了这些拓扑不变式的置信度下限,因此表征的动力学适用于未知动力系统(假设为 GP 的样本路径)。本文的重点在于解释这些思想,因此我们将例子限制在一维系统,并展示如何捕捉定点、周期轨道、连接轨道、双稳态和混沌动力学的存在。
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引用次数: 0
Convergence and Approximation of Invariant Measures for Neural Field Lattice Models under Noise Perturbation 噪声扰动下神经场晶格模型不变量的收敛与逼近
IF 2.1 4区 数学 Q2 MATHEMATICS, APPLIED Pub Date : 2024-01-24 DOI: 10.1137/23m157137x
Tomas Caraballo, Zhang Chen, Lingyu Li
SIAM Journal on Applied Dynamical Systems, Volume 23, Issue 1, Page 358-382, March 2024.
Abstract. This paper is mainly concerned with limiting behaviors of invariant measures for neural field lattice models in a random environment. First of all, we consider the convergence relation of invariant measures between the stochastic neural field lattice model and the corresponding deterministic model in weighted spaces, and prove any limit of a sequence of invariant measures of such a lattice model must be an invariant measure of its limiting system as the noise intensity tends to zero. Then we are devoted to studying the numerical approximation of invariant measures of such a stochastic neural lattice model. To this end, we first consider convergence of invariant measures between such a neural lattice model and the system with neurons only interacting with its n-neighborhood; then we further prove the convergence relation of invariant measures between the system with an n-neighborhood and its finite dimensional truncated system. By this procedure, the invariant measure of the stochastic neural lattice models can be approximated by the numerical invariant measure of a finite dimensional truncated system based on the backward Euler–Maruyama (BEM) scheme. Therefore, the invariant measure of a deterministic neural field lattice model can be observed by the invariant measure of the BEM scheme when the noise is not negligible.
SIAM 应用动力系统期刊》,第 23 卷第 1 期,第 358-382 页,2024 年 3 月。 摘要本文主要研究随机环境下神经场晶格模型不变度量的极限行为。首先,我们考虑了随机神经场网格模型与相应的确定性模型在加权空间中的不变量度量收敛关系,并证明了当噪声强度趋于零时,该网格模型不变量度量序列的任何极限必定是其极限系统的不变量度量。然后,我们将致力于研究这种随机神经网格模型不变量的数值逼近。为此,我们首先考虑这种神经网格模型与神经元只与其 n 邻域相互作用的系统之间的不变量度量的收敛性;然后,我们进一步证明具有 n 邻域的系统与其有限维截断系统之间的不变量度量的收敛关系。通过这一过程,随机神经网格模型的不变度量可以用基于后向欧拉-马鲁山(BEM)方案的有限维截断系统的数值不变度量来近似。因此,当噪声不可忽略时,确定性神经场网格模型的不变度量可以通过 BEM 方案的不变度量来观察。
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引用次数: 0
Shifting Consensus in a Biased Compromise Model 有偏见的妥协模式中的共识转变
IF 2.1 4区 数学 Q2 MATHEMATICS, APPLIED Pub Date : 2024-01-22 DOI: 10.1137/23m1552346
Olivia Cannon, Ty Bondurant, Malindi Whyte, Arnd Scheel
SIAM Journal on Applied Dynamical Systems, Volume 23, Issue 1, Page 297-324, March 2024.
Abstract. We investigate the effect of bias on the formation and dynamics of opinion clusters in the bounded confidence model. For weak bias, we quantify the change in average opinion and potential dispersion and decrease in cluster size. For nonlinear bias modeling self-incitement, we establish coherent drifting motion of clusters on a background of uniform opinion distribution for biases below a critical threshold where clusters dissolve. Technically, we use geometric singular perturbation theory to derive drift speeds, we rely on a nonlocal center manifold analysis to construct drifting clusters near threshold, and we implement numerical continuation in a forward-backward delay equation to connect asymptotic regimes.
SIAM 应用动力系统期刊》第 23 卷第 1 期第 297-324 页,2024 年 3 月。 摘要我们研究了有界置信模型中偏见对意见集群的形成和动态的影响。对于弱偏差,我们量化了平均意见和潜在离散度的变化以及集群规模的减小。对于非线性偏差模型中的自我激励,我们在均匀舆论分布的背景上建立了簇的连贯漂移运动,当偏差低于临界阈值时,簇会解散。在技术上,我们使用几何奇异扰动理论来推导漂移速度,依靠非局部中心流形分析来构建临界点附近的漂移集群,并在前向后延迟方程中实施数值延续来连接渐近状态。
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引用次数: 0
Sufficient Conditions for Linear Stability of Complex-Balanced Equilibria in Generalized Mass-Action Systems 广义质量作用系统中复杂平衡平衡点线性稳定性的充分条件
IF 2.1 4区 数学 Q2 MATHEMATICS, APPLIED Pub Date : 2024-01-22 DOI: 10.1137/22m154260x
Stefan Müller, Georg Regensburger
SIAM Journal on Applied Dynamical Systems, Volume 23, Issue 1, Page 325-357, March 2024.
Abstract. Generalized mass-action systems are power-law dynamical systems arising from chemical reaction networks. Essentially, every nonnegative ODE model used in chemistry and biology (for example, in ecology and epidemiology) and even in economics and engineering can be written in this form. Previous results have focused on existence and uniqueness of special steady states (complex-balanced equilibria) for all rate constants, thereby ruling out multiple (special) steady states. Recently, necessary conditions for linear stability have been obtained. In this work, we provide sufficient conditions for the linear stability of complex-balanced equilibria for all rate constants (and also for the nonexistence of other steady states). In particular, via sign vector conditions (on the stoichiometric coefficients and kinetic orders), we guarantee that the Jacobian matrix is a [math]-matrix. Technically, we use a new decomposition of the graph Laplacian which allows us to consider orders of (generalized) monomials. Alternatively, we use cycle decomposition which allows a linear parametrization of all Jacobian matrices. In any case, we guarantee stability without explicit computation of steady states. We illustrate our results in examples from chemistry and biology: generalized Lotka–Volterra systems and SIR models, a two-component signaling system, and an enzymatic futile cycle.
SIAM 应用动力系统期刊》第 23 卷第 1 期第 325-357 页,2024 年 3 月。 摘要广义质量作用系统是化学反应网络中产生的幂律动力系统。基本上,化学和生物学(如生态学和流行病学),甚至经济学和工程学中使用的所有非负 ODE 模型都可以用这种形式写成。以往的研究成果主要关注所有速率常数的特殊稳态(复平衡平衡)的存在性和唯一性,从而排除了多重(特殊)稳态。最近,我们获得了线性稳定性的必要条件。在这项工作中,我们为所有速率常数下的复平衡平衡线性稳定性(以及其他稳态的不存在)提供了充分条件。特别是,通过符号矢量条件(关于计量系数和动力学阶数),我们保证了雅各布矩阵是一个[math]矩阵。在技术上,我们使用了一种新的图拉普拉斯分解法,它允许我们考虑(广义)单项式的阶数。或者,我们使用循环分解,它允许对所有雅各布矩阵进行线性参数化。无论如何,我们都能保证稳定性,而无需明确计算稳定状态。我们用化学和生物学的例子来说明我们的结果:广义洛特卡-伏特拉系统和 SIR 模型、双成分信号系统和酶徒劳循环。
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引用次数: 0
Reduction of Chemical Reaction Networks with Approximate Conservation Laws 用近似守恒定律还原化学反应网络
IF 2.1 4区 数学 Q2 MATHEMATICS, APPLIED Pub Date : 2024-01-19 DOI: 10.1137/22m1543963
Aurélien Desoeuvres, Alexandru Iosif, Christoph Lüders, Ovidiu Radulescu, Hamid Rahkooy, Matthias Seiß, Thomas Sturm
SIAM Journal on Applied Dynamical Systems, Volume 23, Issue 1, Page 256-296, March 2024.
Abstract. Model reduction of fast-slow chemical reaction networks based on the quasi-steady state approximation fails when the fast subsystem has first integrals. We call these first integrals approximate conservation laws. In order to define fast subsystems and identify approximate conservation laws, we use ideas from tropical geometry. We prove that any approximate conservation law evolves more slowly than all the species involved in it and therefore represents a supplementary slow variable in an extended system. By elimination of some variables of the extended system, we obtain networks without approximate conservation laws, which can be reduced by standard singular perturbation methods. The field of applications of approximate conservation laws covers the quasi-equilibrium approximation, which is well known in biochemistry. We discuss reductions of slow-fast as well as multiple timescale systems. Networks with multiple timescales have hierarchical relaxation. At a given timescale, our multiple timescale reduction method defines three subsystems composed of (i) slaved fast variables satisfying algebraic equations, (ii) slow driving variables satisfying reduced ordinary differential equations, and (iii) quenched much slower variables that are constant. The algebraic equations satisfied by fast variables define chains of nested normally hyperbolic invariant manifolds. In such chains, faster manifolds are of higher dimension and contain the slower manifolds. Our reduction methods are introduced algorithmically for networks with monomial reaction rates and linear, monomial, or polynomial approximate conservation laws. We propose symbolic algorithms to reshape and rescale the networks such that geometric singular perturbation theory can be applied to them, test the applicability of the theory, and finally reduce the networks. As a proof of concept, we apply this method to a model of the TGF-beta signaling pathway.
SIAM 应用动力系统期刊》第 23 卷第 1 期第 256-296 页,2024 年 3 月。 摘要。当快速子系统具有初积分时,基于准稳态近似的快慢化学反应网络模型还原就会失败。我们称这些初积分为近似守恒定律。为了定义快速子系统并确定近似守恒定律,我们使用了热带几何的思想。我们证明,任何近似守恒定律的演化速度都比其涉及的所有变量慢,因此代表了扩展系统中的一个补充慢变量。通过消除扩展系统中的某些变量,我们可以得到没有近似守恒定律的网络,这些网络可以通过标准奇异扰动方法进行还原。近似守恒定律的应用领域包括准平衡近似,这在生物化学中是众所周知的。我们讨论了慢-快以及多时间尺度系统的还原。具有多个时间尺度的网络具有层次松弛。在给定的时间尺度下,我们的多时间尺度还原方法定义了三个子系统,分别由(i) 满足代数方程的从动快速变量,(ii) 满足还原常微分方程的慢速驱动变量,以及(iii) 恒定的淬火慢速变量组成。快速变量满足的代数方程定义了嵌套的常双曲不变流形链。在这些流形链中,速度较快的流形维度较高,包含速度较慢的流形。我们通过算法介绍了针对具有单次反应速率和线性、单次或多项式近似守恒定律的网络的还原方法。我们提出了重塑和调整网络规模的符号算法,以便将几何奇异扰动理论应用于网络,测试理论的适用性,并最终还原网络。作为概念验证,我们将此方法应用于 TGF-beta 信号通路模型。
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引用次数: 0
High-Dimensional Cointegration and Kuramoto Inspired Systems 高维协整与仓本启发系统
IF 2.1 4区 数学 Q2 MATHEMATICS, APPLIED Pub Date : 2024-01-18 DOI: 10.1137/22m1509771
Jacob Stærk-Østergaard, Anders Rahbek, Susanne Ditlevsen
SIAM Journal on Applied Dynamical Systems, Volume 23, Issue 1, Page 236-255, March 2024.
Abstract. This paper presents a novel estimator for a nonstandard restriction to both symmetry and low rank in the context of high-dimensional cointegrated processes. Furthermore, we discuss rank estimation for high-dimensional cointegrated processes by restricted bootstrapping of the Gaussian innovations. We demonstrate that the classical rank test for cointegrated systems is prone to underestimating the true rank and demonstrate this effect in a 100-dimensional system. We also discuss the implications of this underestimation for such high-dimensional systems in general. Also, we define a linearized Kuramoto system and present a simulation study, where we infer the cointegration rank of the unrestricted [math] system and successively the underlying clustered network structure based on a graphical approach and a symmetrized low rank estimator of the couplings derived from a reparametrization of the likelihood under this unusual restriction.
SIAM 应用动力系统期刊》第 23 卷第 1 期第 236-255 页,2024 年 3 月。 摘要本文针对高维协整过程中对称性和低秩的非标准限制提出了一种新的估计方法。此外,我们还讨论了通过对高斯创新进行限制性引导来对高维协整过程进行秩估计。我们证明,协整系统的经典秩检验容易低估真实秩,并在一个 100 维系统中证明了这种效应。我们还讨论了这种低估对一般高维系统的影响。此外,我们还定义了一个线性化的仓本系统,并提出了一项模拟研究。在该研究中,我们基于图解法推断了无限制[数学]系统的协整秩,并依次推断了底层聚类网络结构,以及在这种非同寻常的限制条件下,通过对似然的重新参数化得出的耦合的对称低秩估计值。
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引用次数: 0
Dynamics on Hepatitis B Virus Infection In Vivo with Interval Delay 体内乙型肝炎病毒感染的动态变化与间隔延迟
IF 2.1 4区 数学 Q2 MATHEMATICS, APPLIED Pub Date : 2024-01-17 DOI: 10.1137/23m154546x
Haonan Zhong, Kaifa Wang
SIAM Journal on Applied Dynamical Systems, Volume 23, Issue 1, Page 205-235, March 2024.
Abstract.In view of the molecular biological mechanism of the cytotoxic T lymphocytes proliferation induced by hepatitis B virus infection in vivo, a novel dynamical model with interval delay is proposed. The interval delay is determined by two delay parameters, namely delay center and delay radius. We derive the basic reproduction number [math] for the viral infection and obtain that the virus-free equilibrium (VFE) is globally asymptotically stable if [math]. When [math], besides VFE, the unique virus-present equilibrium (VPE) exists and the conditions of its asymptotical stability are obtained. Moreover, we study the Hopf bifurcations induced by the two delay parameters. Although there is no mitotic term in the target-cell dynamics, the results indicate that both these delay parameters can lead to periodic fluctuations at VPE, but only the smaller delay radius will destabilize the system, which is different from the classical discrete delay or distributed delay. Numerical simulations indicate that the proposed model can capture the profiles of the clinical data of two untreated chronic hepatitis B patients. The ability of interval delay to destabilize the system is between discrete delay and distributed delay, and the delay center plays the primary role. Pharmaceutical treatment can affect the stability of VPE and induce the fast-slow periodic phenomenon.
SIAM 应用动力系统期刊》,第 23 卷第 1 期,第 205-235 页,2024 年 3 月。 摘要:针对乙型肝炎病毒感染诱导体内细胞毒性 T 淋巴细胞增殖的分子生物学机制,提出了一种新型的带区间延迟的动力学模型。区间延迟由两个延迟参数决定,即延迟中心和延迟半径。我们推导出病毒感染的基本繁殖数[math],并得到如果[math],无病毒平衡(VFE)是全局渐近稳定的。当[math]时,除了无病毒平衡(VFE),还存在唯一的有病毒平衡(VPE),并得到了其渐近稳定性的条件。此外,我们还研究了由两个延迟参数引起的霍普夫分岔。虽然靶细胞动力学中不存在有丝分裂项,但结果表明这两个延迟参数都会导致 VPE 的周期性波动,但只有较小的延迟半径会破坏系统的稳定性,这与经典的离散延迟或分布延迟不同。数值模拟表明,所提出的模型可以捕捉到两名未经治疗的慢性乙型肝炎患者的临床数据特征。区间延迟破坏系统稳定性的能力介于离散延迟和分布延迟之间,延迟中心起主要作用。药物治疗会影响 VPE 的稳定性并诱发快慢周期现象。
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引用次数: 0
Stable Synchronous Propagation of Signals by Feedforward Networks 前馈网络信号的稳定同步传播
IF 2.1 4区 数学 Q2 MATHEMATICS, APPLIED Pub Date : 2024-01-16 DOI: 10.1137/23m1552267
Ian Stewart, David Wood
SIAM Journal on Applied Dynamical Systems, Volume 23, Issue 1, Page 167-204, March 2024.
Abstract.We analyze the dynamics of networks in which a central pattern generator (CPG) transmits signals along one or more feedforward chains in a synchronous or phase-synchronous manner. Such propagating signals are common in biology, especially in locomotion and peristalsis, and are of interest for continuum robots. We construct such networks as feedforward lifts of the CPG. If the CPG dynamics is periodic, so is the lifted dynamics. Synchrony with the CPG manifests as a standing wave, and a regular phase pattern creates a traveling wave. We discuss Liapunov, asymptotic, and Floquet stability of the lifted periodic orbit and introduce transverse versions of these conditions that imply stability for signals propagating along arbitrarily long chains. We compare these notions to a simpler condition, transverse stability of the synchrony subspace, which is equivalent to Floquet stability when nodes are 1 dimensional.
SIAM 应用动力系统期刊》,第 23 卷第 1 期,第 167-204 页,2024 年 3 月。 摘要:我们分析了中央模式发生器(CPG)以同步或相位同步方式沿一条或多条前馈链传递信号的网络动力学。这种传播信号在生物学中很常见,尤其是在运动和蠕动中,对于连续机器人也很有意义。我们将这种网络构建为 CPG 的前馈提升网络。如果 CPG 的动态是周期性的,那么提升后的动态也是周期性的。与 CPG 的同步表现为驻波,而有规律的相位模式则会产生行波。我们讨论了提升周期轨道的李亚普诺夫稳定性、渐近稳定性和弗洛克特稳定性,并介绍了这些条件的横向版本,它们意味着沿任意长链传播的信号的稳定性。我们将这些概念与一个更简单的条件--同步子空间的横向稳定性--进行了比较,当节点为一维时,同步子空间的横向稳定性等同于 Floquet 稳定性。
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引用次数: 0
Flow Map Parameterization Methods for Invariant Tori in Quasi-Periodic Hamiltonian Systems 准周期哈密顿系统中不变环的流图参数化方法
IF 2.1 4区 数学 Q2 MATHEMATICS, APPLIED Pub Date : 2024-01-12 DOI: 10.1137/23m1561257
Álvaro Fernández-Mora, Alex Haro, J. M. Mondelo
SIAM Journal on Applied Dynamical Systems, Volume 23, Issue 1, Page 127-166, March 2024.
Abstract. The aim of this paper is to present a method to compute parameterizations of partially hyperbolic invariant tori and their invariant bundles in nonautonomous quasi-periodic Hamiltonian systems. We generalize flow map parameterization methods to the quasi-periodic setting. To this end, we introduce the notion of fiberwise isotropic tori and sketch definitions and results on fiberwise symplectic deformations and their moment maps. These constructs are vital to work in a suitable setting and lead to the proofs of “magic cancellations” that guarantee the existence of solutions of cohomological equations. We apply our algorithms in the elliptic restricted three body problem and compute nonresonant 3-dimensional invariant tori and their invariant bundles around the [math] point.
SIAM 应用动力系统期刊》,第 23 卷第 1 期,第 127-166 页,2024 年 3 月。 摘要本文旨在提出一种计算非自治准周期哈密顿系统中部分双曲不变环及其不变束参数化的方法。我们将流图参数化方法推广到准周期设置中。为此,我们引入了纤向各向同性环的概念,并简要介绍了纤向交映变形及其矩图的定义和结果。这些构造对于在合适的环境中工作至关重要,并导致了 "神奇抵消 "的证明,从而保证了同调方程解的存在性。我们在椭圆受限三体问题中应用了我们的算法,并计算了[math]点周围的非共振三维不变环及其不变束。
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引用次数: 0
Semianalytical Computation of Heteroclinic Connections Between Center Manifolds with the Parameterization Method 用参数化方法半解析计算中心曲面间的异次元连接
IF 2.1 4区 数学 Q2 MATHEMATICS, APPLIED Pub Date : 2024-01-04 DOI: 10.1137/23m1547883
Miquel Barcelona, Alex Haro, Josep-Maria Mondelo
SIAM Journal on Applied Dynamical Systems, Volume 23, Issue 1, Page 98-126, March 2024.
Abstract. This paper presents a methodology for the computation of whole sets of heteroclinic connections between isoenergetic slices of center manifolds of center [math] center [math] saddle fixed points of autonomous Hamiltonian systems. It involves (a) computing Taylor expansions of the center-unstable and center-stable manifolds of the departing and arriving fixed points through the parameterization method, using a new style that uncouples the center part from the hyperbolic one, thus making the fibered structure of the manifolds explicit; (b) uniformly meshing isoenergetic slices of the center manifolds, using a novel strategy that avoids numerical integration of the reduced differential equations and makes an explicit three-dimensional representation of these slices as deformed solid ellipsoids; (c) matching the center-stable and center-unstable manifolds of the departing and arriving points in a Poincaré section. The methodology is applied to obtain the whole set of isoenergetic heteroclinic connections from the center manifold of [math] to the center manifold of [math] in the Earth-Moon circular, spatial restricted three-body problem, for nine increasing energy levels that reach the appearance of halo orbits in both [math] and [math]. Some comments are made on possible applications to space mission design.
SIAM 应用动力系统期刊》,第 23 卷第 1 期,第 98-126 页,2024 年 3 月。 摘要本文提出了一种计算自主哈密顿系统的中心[数学]中心[数学]鞍定点的中心流形的等能切片之间的整套异次元连接的方法。它包括:(a)通过参数化方法计算出发和到达定点的中心不稳定流形和中心稳定流形的泰勒展开,使用一种新的方式将中心部分与双曲部分解除耦合,从而明确流形的纤维结构;(b) 对中心流形的等能切片进行均匀网格化,采用一种新策略,避免对还原微分方程进行数值积分,并将这些切片明确表示为变形实体椭圆体的三维表示;(c) 将出发点和到达点的中心稳定流形和中心不稳定流形匹配在一个波恩卡莱截面上。在地月环形空间受限三体问题中,针对[math]和[math]中达到光环轨道外观的九个递增能级,应用该方法获得了从[math]的中心流形到[math]的中心流形的整套等能异质连接。对太空任务设计的可能应用发表了一些评论。
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引用次数: 0
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SIAM Journal on Applied Dynamical Systems
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