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Targeting the Non-Coding Genome for the Diagnosis of Disorders of Sex Development. 针对非编码基因组诊断性发育障碍。
IF 2.3 4区 医学 Q2 DEVELOPMENTAL BIOLOGY Pub Date : 2021-01-01 Epub Date: 2021-10-11 DOI: 10.1159/000519238
Gabby Atlas, Rajini Sreenivasan, Andrew Sinclair

Disorders of sex development (DSD) are a complex group of conditions with highly variable clinical phenotypes, most often caused by failure of gonadal development. DSD are estimated to occur in around 1.7% of all live births. Whilst the understanding of genes involved in gonad development has increased exponentially, approximately 50% of patients with a DSD remain without a genetic diagnosis, possibly implicating non-coding genomic regions instead. Here, we review how variants in the non-coding genome of DSD patients can be identified using techniques such as array comparative genomic hybridization (CGH) to detect copy number variants (CNVs), and more recently, whole genome sequencing (WGS). Once a CNV in a patient's non-coding genome is identified, putative regulatory elements such as enhancers need to be determined within these vast genomic regions. We will review the available online tools and databases that can be used to refine regions with potential enhancer activity based on chromosomal accessibility, histone modifications, transcription factor binding site analysis, chromatin conformation, and disease association. We will also review the current in vitro and in vivo techniques available to demonstrate the functionality of the identified enhancers. The review concludes with a clinical update on the enhancers linked to DSD.

性发育障碍(DSD)是一组复杂的疾病,具有高度可变的临床表型,最常由性腺发育失败引起。据估计,在所有活产婴儿中,约有1.7%的人患有先天性失活。虽然对参与性腺发育的基因的了解呈指数级增长,但大约50%的DSD患者仍未得到遗传诊断,可能涉及非编码基因组区域。在这里,我们回顾了如何使用阵列比较基因组杂交(CGH)来检测拷贝数变异(CNVs)以及最近的全基因组测序(WGS)等技术来识别DSD患者的非编码基因组变异。一旦确定了患者非编码基因组中的CNV,就需要在这些巨大的基因组区域中确定诸如增强子等假定的调控元件。我们将回顾现有的在线工具和数据库,这些工具和数据库可用于基于染色体可及性、组蛋白修饰、转录因子结合位点分析、染色质构象和疾病关联来细化具有潜在增强子活性的区域。我们还将回顾目前可用的体外和体内技术,以证明所鉴定的增强子的功能。该综述总结了与DSD相关的增强剂的临床更新。
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引用次数: 9
Non-Coding Genome, Transcription Factors, and Sex Determination. 非编码基因组、转录因子和性别决定。
IF 2.3 4区 医学 Q2 DEVELOPMENTAL BIOLOGY Pub Date : 2021-01-01 Epub Date: 2021-11-02 DOI: 10.1159/000519725
Francis Poulat

In vertebrates, gonadal sex determination is the process by which transcription factors drive the choice between the testicular and ovarian identity of undifferentiated somatic progenitors through activation of 2 different transcriptional programs. Studies in animal models suggest that sex determination always involves sex-specific transcription factors that activate or repress sex-specific genes. These transcription factors control their target genes by recognizing their regulatory elements in the non-coding genome and their binding motifs within their DNA sequence. In the last 20 years, the development of genomic approaches that allow identifying all the genomic targets of a transcription factor in eukaryotic cells gave the opportunity to globally understand the function of the nuclear proteins that control complex genetic programs. Here, the major transcription factors involved in male and female vertebrate sex determination and the genomic profiling data of mouse gonads that contributed to deciphering their transcriptional regulation role will be reviewed.

在脊椎动物中,性腺性别决定是转录因子通过激活两种不同的转录程序驱动未分化体细胞祖细胞在睾丸和卵巢身份之间的选择的过程。动物模型研究表明,性别决定总是涉及到激活或抑制性别特异性基因的性别特异性转录因子。这些转录因子通过识别非编码基因组中的调控元件及其DNA序列中的结合基序来控制其靶基因。在过去的20年里,基因组学方法的发展使得鉴定真核细胞中转录因子的所有基因组靶标成为可能,这为全面了解控制复杂遗传程序的核蛋白的功能提供了机会。本文将对参与雌雄脊椎动物性别决定的主要转录因子以及有助于解读其转录调节作用的小鼠性腺基因组图谱数据进行综述。
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引用次数: 1
Noncoding Genes on Sex Chromosomes and Their Function in Sex Determination, Dosage Compensation, Male Traits, and Diseases. 性染色体上的非编码基因及其在性别决定、剂量补偿、雄性性状和疾病中的作用。
IF 2.3 4区 医学 Q2 DEVELOPMENTAL BIOLOGY Pub Date : 2021-01-01 Epub Date: 2021-11-18 DOI: 10.1159/000519622
Michelle C Maier, Molly-Rose A McInerney, Jennifer A Marshall Graves, Fadi J Charchar

The mammalian Y chromosome has evolved in many species into a specialized chromosome that contributes to sex development among other male phenotypes. This function is well studied in terms of protein-coding genes. Less is known about the noncoding genome on the Y chromosome and its contribution to both sex development and other traits. Once considered junk genetic material, noncoding RNAs are now known to contribute to the regulation of gene expression and to play an important role in refining cellular functions. The prime examples are noncoding genes on the X chromosome, which mitigate the differential dosage of genes on sex chromosomes. Here, we discuss the evolution of noncoding RNAs on the Y chromosome and the emerging evidence of how micro, long, and circular noncoding RNAs transcribed from the Y chromosome contribute to sex differentiation. We briefly touch on emerging evidence that these noncoding RNAs also contribute to some other important clinical phenotypes in humans.

哺乳动物的Y染色体在许多物种中已经进化成一种特殊的染色体,在其他雄性表型中有助于性发育。这一功能在蛋白质编码基因方面得到了很好的研究。人们对Y染色体上的非编码基因组及其对性发育和其他性状的贡献知之甚少。曾经被认为是垃圾遗传物质的非编码rna,现在被认为有助于基因表达的调节,并在完善细胞功能方面发挥重要作用。最好的例子是X染色体上的非编码基因,它们减轻了性染色体上基因的差异剂量。在这里,我们讨论了Y染色体上非编码rna的进化,以及从Y染色体转录的微、长和圆形非编码rna如何促进性别分化的新证据。我们简要地介绍了这些非编码rna也有助于人类一些其他重要临床表型的新证据。
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引用次数: 3
Sex Differentiation in Amphibians: Effect of Temperature and Its Influence on Sex Reversal. 两栖动物性别分化:温度的影响及其对性别逆转的影响。
IF 2.3 4区 医学 Q2 DEVELOPMENTAL BIOLOGY Pub Date : 2021-01-01 Epub Date: 2021-05-17 DOI: 10.1159/000515220
Adrián Ruiz-García, Álvaro S Roco, Mónica Bullejos

The role of environmental factors in sexual differentiation in amphibians is not new. The effect of hormones or hormone-like compounds is widely demonstrated. However, the effect of temperature has traditionally been regarded as something anecdotal that occurs in extreme situations and not as a factor to be considered. The data currently available reveal a different situation. Sexual differentiation in some amphibian species can be altered even by small changes in temperature. On the other hand, although not proven, it is possible that temperature is related to the appearance of sex-reversed individuals in natural populations under conditions unrelated to environmental contaminants. According to this, temperature, through sex reversal (phenotypic sex opposed to genetic sex), could play an important role in the turnover of sex-determining genes and in the maintenance of homomorphic sex chromosomes in this group. Accordingly, and given the expected increase in global temperatures, growth and sexual differentiation in amphibians could easily be affected, altering the sex ratio in natural populations and posing major conservation challenges for a group in worldwide decline. It is therefore particularly urgent to understand the mechanism by which temperature affects sexual differentiation in amphibians.

环境因素在两栖动物性别分化中的作用并不新鲜。激素或类激素化合物的作用已得到广泛证实。然而,温度的影响传统上被认为是发生在极端情况下的轶事,而不是一个需要考虑的因素。目前可获得的数据揭示了一种不同的情况。一些两栖动物的性别分化甚至可以因温度的微小变化而改变。另一方面,虽然没有得到证实,但在与环境污染物无关的条件下,温度可能与自然种群中性别反转个体的出现有关。据此,温度通过性别反转(表型性别与遗传性别相反),可能在性别决定基因的转换和同态性染色体的维持中发挥重要作用。因此,考虑到全球气温的预期上升,两栖动物的生长和性别分化很容易受到影响,从而改变自然种群的性别比例,并对全球范围内日益减少的两栖动物群体提出重大的保护挑战。因此,了解温度影响两栖动物性别分化的机制尤为迫切。
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引用次数: 19
Might Gene Duplication and Neofunctionalization Contribute to the Sexual Lability Observed in Fish? 基因复制和新功能化可能导致鱼类的性不稳定性?
IF 2.3 4区 医学 Q2 DEVELOPMENTAL BIOLOGY Pub Date : 2021-01-01 Epub Date: 2021-06-24 DOI: 10.1159/000515425
Jonika Edgecombe, Lara Urban, Erica V Todd, Neil J Gemmell

Sex determination and differentiation varies widely across vertebrates, but is most dramatically diverse in fishes. Among fishes sex reversal and sex change are observed in 41 teleost families spanning 7 orders. These sex-changing fish perhaps highlight better than any other system that sex determination is not the narrow and fixed construct we once thought, but a plastic trait that is better viewed as a reaction norm. However, while this stunning transformation is increasingly understood, a fundamental question arises, which is why some fish species have retained this inherent plasticity in sexual fate, while others have not? Here, we explore our current understanding of sex change in fish, some of the factors that permit and constrain sex reversal, and posit that gene duplication and neofunctionalization contribute to the sexual lability observed in fish.

性别决定和分化在脊椎动物中差异很大,但在鱼类中差异最大。鱼类中有7目41个硬骨鱼科存在性别逆转和性别变化现象。这些变性鱼可能比其他任何系统都更突出地表明,性别决定不是我们曾经认为的狭隘和固定的结构,而是一种可塑特征,最好被视为一种反应规范。然而,当人们越来越了解这种惊人的转变时,一个基本的问题出现了,那就是为什么有些鱼类在性命运中保留了这种固有的可塑性,而另一些却没有?在这里,我们探讨了我们目前对鱼类性别变化的理解,一些允许和限制性别逆转的因素,并假设基因复制和新功能化有助于鱼类观察到的性别不稳定性。
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引用次数: 5
Erectile Dysfunction in Men on the Rise: Is There a Link with Endocrine Disrupting Chemicals? 男性勃起功能障碍的增加:是否与内分泌干扰物有关?
IF 2.3 4区 医学 Q2 DEVELOPMENTAL BIOLOGY Pub Date : 2021-01-01 Epub Date: 2021-06-16 DOI: 10.1159/000516600
Samuel M Cripps, Deidre M Mattiske, Andrew J Pask

Erectile dysfunction (ED) is one of the most prevalent chronic conditions affecting men. ED can arise from disruptions during development, affecting the patterning of erectile tissues in the penis and/or disruptions in adulthood that impact sexual stimuli, neural pathways, molecular changes, and endocrine signalling that are required to drive erection. Sexual stimulation activates the parasympathetic system which causes nerve terminals in the penis to release nitric oxide (NO). As a result, the penile blood vessels dilate, allowing the penis to engorge with blood. This expansion subsequently compresses the veins surrounding the erectile tissue, restricting venous outflow. As a result, the blood pressure localised in the penis increases dramatically to produce a rigid erection, a process known as tumescence. The sympathetic pathway releases noradrenaline (NA) which causes detumescence: the reversion of the penis to the flaccid state. Androgen signalling is critical for erectile function through its role in penis development and in regulating the physiological processes driving erection in the adult. Interestingly, estrogen signalling is also implicated in penis development and potentially in processes which regulate erectile function during adulthood. Given that endocrine signalling has a prominent role in erectile function, it is likely that exposure to endocrine disrupting chemicals (EDCs) is a risk factor for ED, although this is an under-researched field. Thus, our review provides a detailed description of the underlying biology of erectile function with a focus on the role of endocrine signalling, exploring the potential link between EDCs and ED based on animal and human studies.

勃起功能障碍(ED)是影响男性最普遍的慢性疾病之一。勃起障碍可能是由于发育过程中的中断,影响阴茎勃起组织的模式和/或成年期的中断,影响性刺激、神经通路、分子变化和驱动勃起所需的内分泌信号。性刺激激活副交感神经系统,使阴茎的神经末梢释放一氧化氮(NO)。结果,阴茎血管扩张,使阴茎充血。这种扩张随后压迫勃起组织周围的静脉,限制静脉流出。结果,阴茎内的血压急剧升高,从而产生僵硬的勃起,这一过程被称为阴茎膨胀。交感神经通路释放去甲肾上腺素(NA),引起消肿:阴茎恢复到松弛状态。雄激素信号通过其在阴茎发育和调节成人勃起的生理过程中的作用,对勃起功能至关重要。有趣的是,雌激素信号也与阴茎发育有关,并可能参与调节成年期勃起功能的过程。鉴于内分泌信号在勃起功能中起着重要作用,暴露于内分泌干扰化学物质(EDCs)可能是ED的一个危险因素,尽管这是一个尚未充分研究的领域。因此,我们的综述详细描述了勃起功能的潜在生物学,重点是内分泌信号的作用,并基于动物和人类研究探索了EDCs和ED之间的潜在联系。
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引用次数: 11
Environmental Cues and Mechanisms Underpinning Sex Change in Fish. 鱼类性别变化的环境线索和机制。
IF 2.3 4区 医学 Q2 DEVELOPMENTAL BIOLOGY Pub Date : 2021-01-01 Epub Date: 2021-06-10 DOI: 10.1159/000515274
Laura Casas, Fran Saborido-Rey

Fishes are the only vertebrates that undergo sex change during their lifetime, but even within this group, a unique reproductive strategy is displayed by only 1.5% of the teleosts. This lability in alternating sexual fate is the result of the simultaneous suppression and activation of opposing male and female networks. Here, we provide a brief review summarizing recent advances in our understanding of the environmental cues that trigger sex change and their perception, integration, and translation into molecular cascades that convert the sex of an individual. We particularly focus on molecular events underpinning the complex behavioral and morphological transformation involved in sex change, dissecting the main molecular players and regulatory networks that shape the transformation of one sex into the opposite. We show that histological changes and molecular pathways governing gonadal reorganization are better described than the neuroendocrine basis of sex change and that, despite important advances, information is lacking for the majority of hermaphrodite species. We highlight significant gaps in our knowledge of how sex change takes place and suggest future research directions.

鱼类是唯一在其一生中经历性别变化的脊椎动物,但即使在这一群体中,也只有1.5%的硬骨鱼显示出独特的生殖策略。这种交替性命运的不稳定性是同时抑制和激活对立的男性和女性网络的结果。在这里,我们简要回顾总结了我们对触发性别变化的环境线索及其感知、整合和转化为转化个体性别的分子级联的理解的最新进展。我们特别关注支持性别变化中复杂行为和形态转变的分子事件,剖析了塑造性别转变的主要分子参与者和调节网络。我们表明,控制性腺重组的组织学变化和分子途径比性别变化的神经内分泌基础更好地描述,尽管取得了重要进展,但缺乏大多数雌雄同体物种的信息。我们强调了我们在性别变化如何发生的知识方面的重大差距,并提出了未来的研究方向。
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引用次数: 8
Is Thermal Responsiveness Affected by Maternal Estrogens in Species with Temperature-Dependent Sex Determination? 在温度依赖性别决定的物种中,雌性雌激素是否影响热反应性?
IF 2.3 4区 医学 Q2 DEVELOPMENTAL BIOLOGY Pub Date : 2021-01-01 Epub Date: 2021-04-26 DOI: 10.1159/000515187
Rachel M Bowden, Ryan T Paitz

In species with temperature-dependent sex determination (TSD), incubation temperatures regulate the expression of genes involved in gonadal differentiation and determine whether the gonads develop into ovaries or testes. For most species, natural incubation conditions result in transient exposure to thermal cues for both ovarian and testis development, but how individuals respond to this transient exposure varies and can drive variation in the resulting sex ratios. Here, we argue that variation in the timing to respond to temperature cues, or thermal responsiveness, is a trait needing further study. Recent work in the red-eared slider turtle (Trachemys scripta) has found that when embryos experience transient exposure to warm conditions (i.e., heatwaves), some embryos show high responsiveness, requiring only short exposures to commit to ovarian development, while others show low responsiveness, developing testes even after more extended exposures to warm conditions. We discuss how maternal estrogens might influence thermal responsiveness for organisms that develop under thermal fluctuations. Examining the interplay of molecular responses to more subtle thermal and endocrine environments may reveal significant insights into the process of sex determination in species with TSD.

在具有温度依赖性性别决定(TSD)的物种中,孵育温度调节性腺分化相关基因的表达,并决定性腺是发育成卵巢还是睾丸。对于大多数物种来说,自然孵化条件导致卵巢和睾丸发育短暂暴露于热信号,但个体对这种短暂暴露的反应各不相同,并可能导致性别比例的变化。在这里,我们认为对温度线索或热反应性的反应时间的变化是一个需要进一步研究的特征。最近对红耳滑龟(Trachemys scripta)的研究发现,当胚胎经历短暂的温暖条件(即热浪)时,一些胚胎表现出高反应性,只需要短时间的暴露就可以进行卵巢发育,而另一些胚胎表现出低反应性,即使在更长时间的温暖条件下也能发育睾丸。我们讨论了母体雌激素如何影响在热波动下发育的生物体的热反应性。研究分子对更微妙的热环境和内分泌环境的相互作用,可能会揭示TSD物种性别决定过程的重要见解。
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引用次数: 4
Epigenetic Regulation during Primordial Germ Cell Development and Differentiation. 原始生殖细胞发育和分化过程中的表观遗传调控
IF 2.3 4区 医学 Q2 DEVELOPMENTAL BIOLOGY Pub Date : 2021-01-01 Epub Date: 2021-11-30 DOI: 10.1159/000520412
Navin B Ramakrishna, Keir Murison, Eric A Miska, Harry G Leitch

Germline development varies significantly across metazoans. However, mammalian primordial germ cell (PGC) development has key conserved landmarks, including a critical period of epigenetic reprogramming that precedes sex-specific differentiation and gametogenesis. Epigenetic alterations in the germline are of unique importance due to their potential to impact the next generation. Therefore, regulation of, and by, the non-coding genome is of utmost importance during these epigenomic events. Here, we detail the key chromatin changes that occur during mammalian PGC development and how these interact with the expression of non-coding RNAs alongside broader epitranscriptomic changes. We identify gaps in our current knowledge, in particular regarding epigenetic regulation in the human germline, and we highlight important areas of future research.

元古动物的生殖细胞发育差异很大。然而,哺乳动物的原始生殖细胞(PGC)发育具有关键的保守标志,包括在性别特异性分化和配子发生之前的表观遗传重编程关键时期。生殖细胞中的表观遗传改变具有独特的重要性,因为它们有可能影响下一代。因此,在这些表观基因组事件中,非编码基因组的调控至关重要。在这里,我们详细介绍了哺乳动物 PGC 发育过程中发生的关键染色质变化,以及这些变化如何与非编码 RNA 的表达以及更广泛的表观转录组变化相互作用。我们找出了目前知识中的空白,特别是有关人类生殖系表观遗传调控的知识,并强调了未来研究的重要领域。
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引用次数: 0
Epigenetic Regulation and Environmental Sex Determination in Cichlid Fishes. 慈鲷的表观遗传调控和环境性别决定。
IF 2.3 4区 医学 Q2 DEVELOPMENTAL BIOLOGY Pub Date : 2021-01-01 Epub Date: 2021-08-25 DOI: 10.1159/000517197
Suzy C P Renn, Peter L Hurd

Studying environmental sex determination (ESD) in cichlids provides a phylogenetic and comparative approach to understand the evolution of the underlying mechanisms, their impact on the evolution of the overlying systems, and the neuroethology of life history strategies. Natural selection normally favors parents who invest equally in the development of male and female offspring, but evolution may favor deviations from this 50:50 ratio when environmental conditions produce an advantage for doing so. Many species of cichlids demonstrate ESD in response to water chemistry (temperature, pH, and oxygen concentration). The relative strengths of and the exact interactions between these factors vary between congeners, demonstrating genetic variation in sensitivity. The presence of sizable proportions of the less common sex towards the environmental extremes in most species strongly suggests the presence of some genetic sex-determining loci acting in parallel with the ESD factors. Sex determination and differentiation in these species does not seem to result in the organization of a final and irreversible sexual fate, so much as a life-long ongoing battle between competing male- and female-determining genetic and hormonal networks governed by epigenetic factors. We discuss what is and is not known about the epigenetic mechanism behind the differentiation of both gonads and sex differences in the brain. Beyond the well-studied tilapia species, the 2 best-studied dwarf cichlid systems showing ESD are the South American genus Apistogramma and the West African genus Pelvicachromis. Both species demonstrate male morphs with alternative reproductive tactics. We discuss the further neuroethology opportunities such systems provide to the study of epigenetics of alternative life history strategies and other behavioral variation.

研究慈鲷的环境性别决定(ESD)提供了一种系统发育和比较方法,以了解其基本机制的演变、其对上层系统演变的影响以及生活史策略的神经伦理学。自然选择通常倾向于对雌雄后代的发育进行同等投资的亲本,但当环境条件对这样做产生优势时,进化可能会偏离 50:50 的比例。许多种类的慈鲷在对水化学(温度、pH 值和氧气浓度)做出反应时都会表现出 ESD。这些因素的相对强度和确切的相互作用因同类而异,表明敏感性存在遗传变异。在大多数物种中,较不常见的性别在极端环境中占相当大的比例,这有力地表明存在一些与 ESD 因素平行作用的遗传性别决定基因位点。在这些物种中,性别决定和性别分化似乎并没有形成最终的、不可逆转的性别命运,而是在表观遗传因素的支配下,在相互竞争的决定雄性和雌性的遗传和激素网络之间进行的一场终生持续的斗争。我们将讨论性腺分化和大脑性别差异背后的表观遗传机制。除了研究得比较清楚的罗非鱼物种之外,研究得最清楚的两种表现出ESD的矮慈鲷系统是南美洲的Apistogramma属和西非的Pelvicachromis属。这两个物种都表现出雄性形态,具有不同的繁殖策略。我们讨论了这些系统为研究替代生活史策略的表观遗传学和其他行为变异提供的进一步神经伦理学机会。
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引用次数: 0
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Sexual Development
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