Pub Date : 2024-04-22DOI: 10.1016/j.mam.2024.101274
Lijun Wang , Wensi Wan , Shuang Zhang , Tarun Keswani , Guoping Li , Junjie Xiao
Physical exercise has been widely acknowledged as a beneficial lifestyle alteration and a potent non-pharmacological treatment for heart disease. Extensive investigations have revealed the beneficial effects of exercise on the heart and the underlying mechanisms involved. Exercise is considered one of the key factors that can lead to epigenetic alterations. The increasing number of identified molecules in the exercised heart has led to many studies in recent years that have explored the cellular function of ncRNAs and RNA modifications in the heart. Investigating the regulatory role of RNA-mediated epigenetic regulation in exercised hearts will contribute to the development of therapeutic strategies for the management of heart diseases. This review aims to summarize the positive impact of exercise on cardiac health. We will first provide an overview of the mechanisms through which exercise offers protection to the heart. Subsequently, we will delve into the current understanding of ncRNAs, specifically miRNAs, lncRNAs, and circRNAs, as well as RNA modification, focusing on RNA m6A and RNA A-to-I editing, and how they contribute to exercise-induced benefits for the heart. Lastly, we will explore the emerging therapeutic strategies that utilize exercise-mediated RNA epigenetic regulation in the treatment of heart diseases, while also addressing the challenges faced in this field.
{"title":"RNA-mediated epigenetic regulation in exercised heart: Mechanisms and opportunities for intervention","authors":"Lijun Wang , Wensi Wan , Shuang Zhang , Tarun Keswani , Guoping Li , Junjie Xiao","doi":"10.1016/j.mam.2024.101274","DOIUrl":"https://doi.org/10.1016/j.mam.2024.101274","url":null,"abstract":"<div><p>Physical exercise has been widely acknowledged as a beneficial lifestyle alteration and a potent non-pharmacological treatment for heart disease. Extensive investigations have revealed the beneficial effects of exercise on the heart and the underlying mechanisms involved. Exercise is considered one of the key factors that can lead to epigenetic alterations. The increasing number of identified molecules in the exercised heart has led to many studies in recent years that have explored the cellular function of ncRNAs and RNA modifications in the heart. Investigating the regulatory role of RNA-mediated epigenetic regulation in exercised hearts will contribute to the development of therapeutic strategies for the management of heart diseases. This review aims to summarize the positive impact of exercise on cardiac health. We will first provide an overview of the mechanisms through which exercise offers protection to the heart. Subsequently, we will delve into the current understanding of ncRNAs, specifically miRNAs, lncRNAs, and circRNAs, as well as RNA modification, focusing on RNA m<sup>6</sup>A and RNA A-to-I editing, and how they contribute to exercise-induced benefits for the heart. Lastly, we will explore the emerging therapeutic strategies that utilize exercise-mediated RNA epigenetic regulation in the treatment of heart diseases, while also addressing the challenges faced in this field.</p></div>","PeriodicalId":49798,"journal":{"name":"Molecular Aspects of Medicine","volume":"97 ","pages":"Article 101274"},"PeriodicalIF":10.6,"publicationDate":"2024-04-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140633185","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Several biomarkers have been proposed to identify frailty, a multisystemic age-related syndrome. However, the complex pathophysiology and the absence of a consensus on a comprehensive and universal definition make it challenging to pinpoint a singular biomarker or set of biomarkers that conclusively characterize frailty. This review delves into the main laboratory biomarkers, placing special emphasis on those associated with various pathways closely tied to the frailty condition, such as inflammation, oxidative stress, mitochondrial dysfunction, metabolic and endocrine alterations and microRNA. Additionally, we provide a summary of different clinical biomarkers encompassing different tools that have been proposed to assess frailty. We further address various imaging biomarkers such as Dual Energy X-ray Absorptiometry, Bioelectrical Impedance analysis, Computed Tomography and Magnetic Resonance Imaging, Ultrasound and D3 Creatine dilution. Intervention to treat frailty, including non-pharmacological ones, especially those involving physical exercise and nutrition, and pharmacological interventions, that include those targeting specific mechanisms such as myostatin inhibitors, insulin sensitizer metformin and with special relevance for hormonal treatments are mentioned. We further address the levels of different biomarkers in monitoring the potential positive effects of some of these interventions. Despite the availability of numerous biomarkers, their performance and usefulness in the clinical arena are far from being satisfactory. Considering the multicausality of frailty, there is an increasing need to assess the role of sets of biomarkers and the combination between laboratory, clinical and image biomarkers, in terms of sensitivity, specificity and predictive values for the diagnosis and prognosis of the different outcomes of frailty to improve detection and monitoring of older people with frailty or at risk of developing it, being this a need in the everyday clinical practice.
虚弱是一种与年龄有关的多系统综合征,目前已提出了几种生物标志物来识别虚弱。然而,由于病理生理学的复杂性,以及对全面、普遍的定义缺乏共识,因此要确定一种或一组生物标志物来确证虚弱的特征具有挑战性。本综述深入探讨了主要的实验室生物标志物,并特别强调了那些与虚弱状况密切相关的各种途径,如炎症、氧化应激、线粒体功能障碍、代谢和内分泌改变以及 microRNA。此外,我们还总结了不同的临床生物标志物,包括已提出的用于评估虚弱的不同工具。我们还进一步讨论了各种成像生物标志物,如双能量 X 射线吸收测量法、生物电阻抗分析、计算机断层扫描和磁共振成像、超声波和 D3 肌酸稀释。我们还提到了治疗虚弱的干预措施,包括非药物干预措施,尤其是涉及体育锻炼和营养的干预措施,以及药物干预措施,其中包括针对特定机制的干预措施,如肌生成抑制剂、胰岛素增敏剂二甲双胍,以及与激素治疗特别相关的干预措施。我们还进一步探讨了不同生物标志物在监测其中一些干预措施的潜在积极效果方面的作用。尽管有许多生物标志物,但它们在临床上的表现和作用还远远不能令人满意。考虑到虚弱的多重性,我们越来越需要评估成套生物标志物的作用,以及实验室、临床和图像生物标志物之间的结合,评估它们在诊断和预后虚弱的不同结果方面的敏感性、特异性和预测值,以改进对患有虚弱或有发生虚弱风险的老年人的检测和监测,这也是日常临床实践的需要。
{"title":"Biomarkers of frailty","authors":"Mariam El Assar , Isabel Rodríguez-Sánchez , Alejandro Álvarez-Bustos , Leocadio Rodríguez-Mañas","doi":"10.1016/j.mam.2024.101271","DOIUrl":"https://doi.org/10.1016/j.mam.2024.101271","url":null,"abstract":"<div><p>Several biomarkers have been proposed to identify frailty, a multisystemic age-related syndrome. However, the complex pathophysiology and the absence of a consensus on a comprehensive and universal definition make it challenging to pinpoint a singular biomarker or set of biomarkers that conclusively characterize frailty. This review delves into the main laboratory biomarkers, placing special emphasis on those associated with various pathways closely tied to the frailty condition, such as inflammation, oxidative stress, mitochondrial dysfunction, metabolic and endocrine alterations and microRNA. Additionally, we provide a summary of different clinical biomarkers encompassing different tools that have been proposed to assess frailty. We further address various imaging biomarkers such as Dual Energy X-ray Absorptiometry, Bioelectrical Impedance analysis, Computed Tomography and Magnetic Resonance Imaging, Ultrasound and D3 Creatine dilution. Intervention to treat frailty, including non-pharmacological ones, especially those involving physical exercise and nutrition, and pharmacological interventions, that include those targeting specific mechanisms such as myostatin inhibitors, insulin sensitizer metformin and with special relevance for hormonal treatments are mentioned. We further address the levels of different biomarkers in monitoring the potential positive effects of some of these interventions. Despite the availability of numerous biomarkers, their performance and usefulness in the clinical arena are far from being satisfactory. Considering the multicausality of frailty, there is an increasing need to assess the role of sets of biomarkers and the combination between laboratory, clinical and image biomarkers, in terms of sensitivity, specificity and predictive values for the diagnosis and prognosis of the different outcomes of frailty to improve detection and monitoring of older people with frailty or at risk of developing it, being this a need in the everyday clinical practice.</p></div>","PeriodicalId":49798,"journal":{"name":"Molecular Aspects of Medicine","volume":"97 ","pages":"Article 101271"},"PeriodicalIF":10.6,"publicationDate":"2024-04-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140553968","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-04-15DOI: 10.1016/j.mam.2024.101272
Matthew J-C. Lee , Nicholas J. Saner , Alessandra Ferri , Esther García-Domínguez , James R. Broatch , David J. Bishop
Ageing is associated with widespread physiological changes prominent within all tissues, including skeletal muscle and the brain, which lead to a decline in physical function. To tackle the growing health and economic burdens associated with an ageing population, the concept of healthy ageing has become a major research priority. Changes in skeletal muscle mitochondrial characteristics have been suggested to make an important contribution to the reductions in skeletal muscle function with age, and age-related changes in mitochondrial content, respiratory function, morphology, and mitochondrial DNA have previously been reported. However, not all studies report changes in mitochondrial characteristics with ageing, and there is increasing evidence to suggest that physical activity (or inactivity) throughout life is a confounding factor when interpreting age-associated changes. Given that physical activity is a potent stimulus for inducing beneficial adaptations to mitochondrial characteristics, delineating the influence of physical activity on the changes in skeletal muscle that occur with age is complicated. This review aims to summarise our current understanding and knowledge gaps regarding age-related changes to mitochondrial characteristics within skeletal muscle, as well as to provide some novel insights into brain mitochondria, and to propose avenues of future research and targeted interventions. Furthermore, where possible, we incorporate discussions of the modifying effects of physical activity, exercise, and training status, to purported age-related changes in mitochondrial characteristics.
老龄化与包括骨骼肌和大脑在内的所有组织的普遍生理变化有关,这些变化会导致身体机能下降。为了应对人口老龄化带来的日益沉重的健康和经济负担,健康老龄化的概念已成为研究的重中之重。骨骼肌线粒体特征的变化被认为是导致骨骼肌功能随年龄增长而下降的重要原因,线粒体含量、呼吸功能、形态和线粒体 DNA 与年龄相关的变化也曾被报道过。然而,并非所有研究都报告了线粒体特征随年龄增长而发生的变化,而且越来越多的证据表明,在解释与年龄有关的变化时,终生体育锻炼(或不活动)是一个干扰因素。鉴于体育锻炼是诱导线粒体特征发生有益适应性变化的有效刺激因素,因此界定体育锻炼对骨骼肌随年龄发生变化的影响非常复杂。本综述旨在总结我们目前对骨骼肌线粒体特征随年龄变化的理解和知识差距,同时提供一些有关大脑线粒体的新见解,并提出未来研究和有针对性干预的途径。此外,在可能的情况下,我们还讨论了体力活动、运动和训练状态对线粒体特征中据称与年龄有关的变化的调节作用。
{"title":"Delineating the contribution of ageing and physical activity to changes in mitochondrial characteristics across the lifespan","authors":"Matthew J-C. Lee , Nicholas J. Saner , Alessandra Ferri , Esther García-Domínguez , James R. Broatch , David J. Bishop","doi":"10.1016/j.mam.2024.101272","DOIUrl":"https://doi.org/10.1016/j.mam.2024.101272","url":null,"abstract":"<div><p>Ageing is associated with widespread physiological changes prominent within all tissues, including skeletal muscle and the brain, which lead to a decline in physical function. To tackle the growing health and economic burdens associated with an ageing population, the concept of healthy ageing has become a major research priority. Changes in skeletal muscle mitochondrial characteristics have been suggested to make an important contribution to the reductions in skeletal muscle function with age, and age-related changes in mitochondrial content, respiratory function, morphology, and mitochondrial DNA have previously been reported. However, not all studies report changes in mitochondrial characteristics with ageing, and there is increasing evidence to suggest that physical activity (or inactivity) throughout life is a confounding factor when interpreting age-associated changes. Given that physical activity is a potent stimulus for inducing beneficial adaptations to mitochondrial characteristics, delineating the influence of physical activity on the changes in skeletal muscle that occur with age is complicated. This review aims to summarise our current understanding and knowledge gaps regarding age-related changes to mitochondrial characteristics within skeletal muscle, as well as to provide some novel insights into brain mitochondria, and to propose avenues of future research and targeted interventions. Furthermore, where possible, we incorporate discussions of the modifying effects of physical activity, exercise, and training status, to purported age-related changes in mitochondrial characteristics.</p></div>","PeriodicalId":49798,"journal":{"name":"Molecular Aspects of Medicine","volume":"97 ","pages":"Article 101272"},"PeriodicalIF":10.6,"publicationDate":"2024-04-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140553967","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-04-08DOI: 10.1016/j.mam.2024.101273
Rossella Cannarella , Andrea Crafa , Roberto Curto , Rosita A. Condorelli , Sandro La Vignera , Aldo E. Calogero
Often associated with obesity, male infertility represents a widespread condition that challenges the wellbeing of the couple. In this article, we provide a comprehensive and critical analysis of studies exploring the association between obesity and male reproductive function, to evaluate the frequency of this association, and establish the effects of increased body weight on conventional and biofunctional sperm parameters and infertility. In an attempt to find possible molecular markers of infertility in obese male patients, the numerous mechanisms responsible for infertility in overweight/obese patients are reviewed in depth. These include obesity-related functional hypogonadism, insulin resistance, hyperinsulinemia, chronic inflammation, adipokines, irisin, gut hormones, gut microbiome, and sperm transcriptome. According to meta-analytic evidence, excessive body weight negatively influences male reproductive health. This can occurr through a broad array of molecular mechanisms. Some of these are not yet fully understood and need to be further elucidated in the future. A better understanding of the effects of metabolic disorders on spermatogenesis and sperm fertilizing capacity is very useful for identifying new diagnostic markers and designing therapeutic strategies for better clinical management of male infertility.
{"title":"Obesity and male fertility disorders","authors":"Rossella Cannarella , Andrea Crafa , Roberto Curto , Rosita A. Condorelli , Sandro La Vignera , Aldo E. Calogero","doi":"10.1016/j.mam.2024.101273","DOIUrl":"https://doi.org/10.1016/j.mam.2024.101273","url":null,"abstract":"<div><p>Often associated with obesity, male infertility represents a widespread condition that challenges the wellbeing of the couple. In this article, we provide a comprehensive and critical analysis of studies exploring the association between obesity and male reproductive function, to evaluate the frequency of this association, and establish the effects of increased body weight on conventional and biofunctional sperm parameters and infertility. In an attempt to find possible molecular markers of infertility in obese male patients, the numerous mechanisms responsible for infertility in overweight/obese patients are reviewed in depth. These include obesity-related functional hypogonadism, insulin resistance, hyperinsulinemia, chronic inflammation, adipokines, irisin, gut hormones, gut microbiome, and sperm transcriptome. According to meta-analytic evidence, excessive body weight negatively influences male reproductive health. This can occurr through a broad array of molecular mechanisms. Some of these are not yet fully understood and need to be further elucidated in the future. A better understanding of the effects of metabolic disorders on spermatogenesis and sperm fertilizing capacity is very useful for identifying new diagnostic markers and designing therapeutic strategies for better clinical management of male infertility.</p></div>","PeriodicalId":49798,"journal":{"name":"Molecular Aspects of Medicine","volume":"97 ","pages":"Article 101273"},"PeriodicalIF":10.6,"publicationDate":"2024-04-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0098299724000323/pdfft?md5=28ca8162d58e91cef0a3c239b854dd66&pid=1-s2.0-S0098299724000323-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140536069","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-04-06DOI: 10.1016/j.mam.2024.101270
Dequan Liu , Shijin Wang , Shuang Liu , Qifei Wang, Xiangyu Che, Guangzhen Wu
The onset of sarcopenia is intimately linked with aging, posing significant implications not only for individual patient quality of life but also for the broader societal healthcare framework. Early and accurate identification of sarcopenia and a comprehensive understanding of its mechanistic underpinnings and therapeutic targets paramount to addressing this condition effectively. This review endeavors to present a cohesive overview of recent advancements in sarcopenia research and diagnosis. We initially delve into the contemporary diagnostic criteria, specifically referencing the European Working Group on Sarcopenia in Older People (EWGSOP) 2 and Asian Working Group on Sarcopenia (AWGS) 2019 benchmarks. Additionally, we elucidate comprehensive assessment techniques for muscle strength, quantity, and physical performance, highlighting tools such as grip strength, chair stand test, dual-energy X-ray Absorptiometry (DEXA), bioelectrical impedance analysis (BIA), gait speed, and short physical performance battery (SPPB), while also discussing their inherent advantages and limitations. Such diagnostic advancements pave the way for early identification and unequivocal diagnosis of sarcopenia. Proceeding further, we provide a deep-dive into sarcopenia's pathogenesis, offering a thorough examination of associated signaling pathways like the Myostatin, AMP-activated protein kinase (AMPK), insulin/IGF-1 Signaling (IIS), and the nuclear factor kappa-light-chain-enhancer of activated B cells (NF-κB) pathways. Each pathway's role in sarcopenia mediation is detailed, underscoring potential therapeutic target avenues. From a mechanistic perspective, the review also underscores the pivotal role of mitochondrial dysfunction in sarcopenia, emphasizing elements such as mitochondrial oxidative overload, mitochondrial biogenesis, and mitophagy, and highlighting their therapeutic significance. At last, we capture recent strides made in sarcopenia treatment, ranging from nutritional and exercise interventions to potential pharmacological and supplementation strategies. In sum, this review meticulously synthesizes the latest scientific developments in sarcopenia, aiming to enhance diagnostic precision in clinical practice and provide comprehensive insights into refined mechanistic targets and innovative therapeutic interventions, ultimately contributing to optimized patient care and advancements in the field.
肌肉疏松症的发生与衰老密切相关,不仅对患者个人的生活质量有重大影响,而且对更广泛的社会医疗保健框架也有重大影响。及早准确地识别肌肉疏松症,全面了解其机理基础和治疗目标,是有效解决这一问题的关键。本综述旨在全面概述肌肉疏松症研究与诊断的最新进展。我们首先深入探讨了当代的诊断标准,特别参考了欧洲老年人肌肉疏松症工作组(EWGSOP)2 和亚洲肌肉疏松症工作组(AWGS)2019 的基准。此外,我们还阐明了肌肉力量、数量和体能表现的综合评估技术,重点介绍了握力、椅子站立测试、双能 X 射线吸收测量(DEXA)、生物电阻抗分析(BIA)、步态速度和短期体能表现电池(SPPB)等工具,同时还讨论了它们固有的优势和局限性。这些诊断方法的进步为早期识别和明确诊断肌肉疏松症铺平了道路。接下来,我们将深入探讨肌肉疏松症的发病机理,对相关的信号通路进行全面研究,如肌促性蛋白(Myostatin)、AMP-激活蛋白激酶(AMPK)、胰岛素/IGF-1 信号通路(IIS)和活化 B 细胞的核因子卡巴轻链增强因子(NF-κB)通路。报告详细阐述了每种途径在肌肉疏松症调解过程中的作用,并强调了潜在的治疗目标途径。从机理角度来看,综述还强调了线粒体功能障碍在肌肉疏松症中的关键作用,强调了线粒体氧化过载、线粒体生物生成和有丝分裂等要素,并突出了它们的治疗意义。最后,我们总结了最近在治疗肌肉疏松症方面取得的进展,包括营养和运动干预,以及潜在的药物和补充策略。总之,这篇综述细致地综合了有关肌肉疏松症的最新科学进展,旨在提高临床实践中的诊断精确度,并提供对精细机制靶点和创新治疗干预措施的全面见解,最终促进患者护理的优化和该领域的进步。
{"title":"Frontiers in sarcopenia: Advancements in diagnostics, molecular mechanisms, and therapeutic strategies","authors":"Dequan Liu , Shijin Wang , Shuang Liu , Qifei Wang, Xiangyu Che, Guangzhen Wu","doi":"10.1016/j.mam.2024.101270","DOIUrl":"https://doi.org/10.1016/j.mam.2024.101270","url":null,"abstract":"<div><p>The onset of sarcopenia is intimately linked with aging, posing significant implications not only for individual patient quality of life but also for the broader societal healthcare framework. Early and accurate identification of sarcopenia and a comprehensive understanding of its mechanistic underpinnings and therapeutic targets paramount to addressing this condition effectively. This review endeavors to present a cohesive overview of recent advancements in sarcopenia research and diagnosis. We initially delve into the contemporary diagnostic criteria, specifically referencing the European Working Group on Sarcopenia in Older People (EWGSOP) 2 and Asian Working Group on Sarcopenia (AWGS) 2019 benchmarks. Additionally, we elucidate comprehensive assessment techniques for muscle strength, quantity, and physical performance, highlighting tools such as grip strength, chair stand test, dual-energy X-ray Absorptiometry (DEXA), bioelectrical impedance analysis (BIA), gait speed, and short physical performance battery (SPPB), while also discussing their inherent advantages and limitations. Such diagnostic advancements pave the way for early identification and unequivocal diagnosis of sarcopenia. Proceeding further, we provide a deep-dive into sarcopenia's pathogenesis, offering a thorough examination of associated signaling pathways like the Myostatin, AMP-activated protein kinase (AMPK), insulin/IGF-1 Signaling (IIS), and the nuclear factor kappa-light-chain-enhancer of activated B cells (NF-κB) pathways. Each pathway's role in sarcopenia mediation is detailed, underscoring potential therapeutic target avenues. From a mechanistic perspective, the review also underscores the pivotal role of mitochondrial dysfunction in sarcopenia, emphasizing elements such as mitochondrial oxidative overload, mitochondrial biogenesis, and mitophagy, and highlighting their therapeutic significance. At last, we capture recent strides made in sarcopenia treatment, ranging from nutritional and exercise interventions to potential pharmacological and supplementation strategies. In sum, this review meticulously synthesizes the latest scientific developments in sarcopenia, aiming to enhance diagnostic precision in clinical practice and provide comprehensive insights into refined mechanistic targets and innovative therapeutic interventions, ultimately contributing to optimized patient care and advancements in the field.</p></div>","PeriodicalId":49798,"journal":{"name":"Molecular Aspects of Medicine","volume":"97 ","pages":"Article 101270"},"PeriodicalIF":10.6,"publicationDate":"2024-04-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0098299724000293/pdfft?md5=0e9c7ed46ddf4cd9b5d03e5e7a83c4d5&pid=1-s2.0-S0098299724000293-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140533652","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-03-29DOI: 10.1016/j.mam.2024.101269
Christian Grätz , Martina Schuster , Florian Brandes , Agnes S. Meidert , Benedikt Kirchner , Marlene Reithmair , Gustav Schelling , Michael W. Pfaffl
Extracellular vesicles are shed by every cell type and can be found in any biofluid. They contain different molecules that can be utilized as biomarkers, including several RNA species which they protect from degradation. Here, we present a pipeline for the development and analysis of extracellular vesicle-associated transcriptomic biomarkers that our group has successfully applied multiple times. We highlight the key steps of the pipeline and give particular emphasis to the necessary quality control checkpoints, which are linked to numerous available guidelines that should be considered along the workflow. Our pipeline starts with patient recruitment and continues with blood sampling and processing. The purification and characterization of extracellular vesicles is explained in detail, as well as the isolation and quality control of extracellular vesicle-associated RNA. We point out the possible pitfalls during library preparation and RNA sequencing and present multiple bioinformatic tools to pinpoint biomarker signature candidates from the sequencing data. Finally, considerations and pitfalls during the validation of the biomarker signature using RT-qPCR will be elaborated.
{"title":"A pipeline for the development and analysis of extracellular vesicle-based transcriptomic biomarkers in molecular diagnostics","authors":"Christian Grätz , Martina Schuster , Florian Brandes , Agnes S. Meidert , Benedikt Kirchner , Marlene Reithmair , Gustav Schelling , Michael W. Pfaffl","doi":"10.1016/j.mam.2024.101269","DOIUrl":"https://doi.org/10.1016/j.mam.2024.101269","url":null,"abstract":"<div><p>Extracellular vesicles are shed by every cell type and can be found in any biofluid. They contain different molecules that can be utilized as biomarkers, including several RNA species which they protect from degradation. Here, we present a pipeline for the development and analysis of extracellular vesicle-associated transcriptomic biomarkers that our group has successfully applied multiple times. We highlight the key steps of the pipeline and give particular emphasis to the necessary quality control checkpoints, which are linked to numerous available guidelines that should be considered along the workflow. Our pipeline starts with patient recruitment and continues with blood sampling and processing. The purification and characterization of extracellular vesicles is explained in detail, as well as the isolation and quality control of extracellular vesicle-associated RNA. We point out the possible pitfalls during library preparation and RNA sequencing and present multiple bioinformatic tools to pinpoint biomarker signature candidates from the sequencing data. Finally, considerations and pitfalls during the validation of the biomarker signature using RT-qPCR will be elaborated.</p></div>","PeriodicalId":49798,"journal":{"name":"Molecular Aspects of Medicine","volume":"97 ","pages":"Article 101269"},"PeriodicalIF":10.6,"publicationDate":"2024-03-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0098299724000281/pdfft?md5=0a27467e224143fcfa525c791bc3d1b6&pid=1-s2.0-S0098299724000281-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140320505","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-03-15DOI: 10.1016/j.mam.2024.101268
Carl T. Wittwer , Andrew C. Hemmert , Jana O. Kent , Nick A. Rejali
Melting is a fundamental property of DNA that can be monitored by absorbance or fluorescence. PCR conveniently produces enough DNA to be directly monitored on real-time instruments with fluorescently labeled probes or dyes. Dyes monitor the entire PCR product, while probes focus on a specific locus within the amplicon. Advances in amplicon melting include high resolution instruments, saturating DNA dyes that better reveal multiple products, prediction programs for domain melting, barcode taxonomic identification, high speed microfluidic melting, and highly parallel digital melting. Most single base variants and small insertions or deletions can be genotyped by high resolution amplicon melting. High resolution melting also enables heterozygote scanning for any variant within a PCR product. A web application (uMelt, http://www.dna-utah.org) predicts amplicon melting curves with multiple domains, a useful tool for verifying intended products. Additional applications include methylation assessment, copy number determination and verification of sequence identity. When amplicon melting does not provide sufficient detail, unlabeled probes or snapback primers can be used instead of covalently labeled probes. DNA melting is a simple, inexpensive, and powerful tool with many research applications that is beginning to make its mark in clinical diagnostics.
熔化是 DNA 的基本特性,可通过吸光度或荧光进行监测。PCR 可以方便地产生足够的 DNA,在实时仪器上用荧光标记的探针或染料直接进行监测。染料可监测整个 PCR 产物,而探针则侧重于扩增子中的特定位点。扩增子熔解技术的进步包括:高分辨率仪器、能更好地显示多个产物的饱和 DNA 染料、域熔解预测程序、条形码分类鉴定、高速微流体熔解以及高度并行的数字熔解。大多数单碱基变异和小的插入或缺失都可以通过高分辨率扩增片段熔解技术进行基因分型。高分辨率熔解还能对 PCR 产物中的任何变异进行杂合子扫描。网络应用程序(uMelt,http://www.dna-utah.org)可预测具有多个域的扩增子熔解曲线,是验证预期产品的有用工具。其他应用还包括甲基化评估、拷贝数测定和序列同一性验证。当扩增子熔解不能提供足够的细节时,可以使用未标记探针或快回引物来代替共价标记探针。DNA 熔解是一种简单、廉价、功能强大的工具,在许多研究领域都有应用,并开始在临床诊断领域大显身手。
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Pub Date : 2024-03-07DOI: 10.1016/j.mam.2024.101260
Emily Shorter, Viktor Engman, Johanna T. Lanner
Skeletal muscle weakness is a debilitating consequence of many malignancies. Muscle weakness has a negative impact on both patient wellbeing and outcome in a range of cancer types and can be the result of loss of muscle mass (i.e. muscle atrophy, cachexia) and occur independently of muscle atrophy or cachexia. There are multiple cancer specific triggers that can initiate the progression of muscle weakness, including the malignancy itself and the tumour environment, as well as chemotherapy, radiotherapy and malnutrition. This can induce weakness via different routes: 1) impaired intrinsic capacity (i.e., contractile dysfunction and intramuscular impairments in excitation-contraction coupling or crossbridge cycling), 2) neuromuscular disconnection and/or 3) muscle atrophy. The mechanisms that underlie these pathways are a complex interplay of inflammation, autophagy, disrupted protein synthesis/degradation, and mitochondrial dysfunction.
The current lack of therapies to treat cancer-associated muscle weakness highlight the critical need for novel interventions (both pharmacological and non-pharmacological) and mechanistic insight. Moreover, most research in the field has placed emphasis on directly improving muscle mass to improve muscle strength. However, accumulating evidence suggests that loss of muscle function precedes atrophy. This review primarily focuses on cancer-associated muscle weakness, independent of cachexia, and provides a solid background on the underlying mechanisms, methodology, current interventions, gaps in knowledge, and limitations of research in the field. Moreover, we have performed a mini-systematic review of recent research into the mechanisms behind muscle weakness in specific cancer types, along with the main pathways implicated.
{"title":"Cancer-associated muscle weakness - From triggers to molecular mechanisms","authors":"Emily Shorter, Viktor Engman, Johanna T. Lanner","doi":"10.1016/j.mam.2024.101260","DOIUrl":"https://doi.org/10.1016/j.mam.2024.101260","url":null,"abstract":"<div><p>Skeletal muscle weakness is a debilitating consequence of many malignancies. Muscle weakness has a negative impact on both patient wellbeing and outcome in a range of cancer types and can be the result of loss of muscle mass (i.e. muscle atrophy, cachexia) and occur independently of muscle atrophy or cachexia. There are multiple cancer specific triggers that can initiate the progression of muscle weakness, including the malignancy itself and the tumour environment, as well as chemotherapy, radiotherapy and malnutrition. This can induce weakness via different routes: 1) impaired intrinsic capacity (i.e., contractile dysfunction and intramuscular impairments in excitation-contraction coupling or crossbridge cycling), 2) neuromuscular disconnection and/or 3) muscle atrophy. The mechanisms that underlie these pathways are a complex interplay of inflammation, autophagy, disrupted protein synthesis/degradation, and mitochondrial dysfunction.</p><p>The current lack of therapies to treat cancer-associated muscle weakness highlight the critical need for novel interventions (both pharmacological and non-pharmacological) and mechanistic insight. Moreover, most research in the field has placed emphasis on directly improving muscle mass to improve muscle strength. However, accumulating evidence suggests that loss of muscle function precedes atrophy. This review primarily focuses on cancer-associated muscle weakness, independent of cachexia, and provides a solid background on the underlying mechanisms, methodology, current interventions, gaps in knowledge, and limitations of research in the field. Moreover, we have performed a mini-systematic review of recent research into the mechanisms behind muscle weakness in specific cancer types, along with the main pathways implicated.</p></div>","PeriodicalId":49798,"journal":{"name":"Molecular Aspects of Medicine","volume":"97 ","pages":"Article 101260"},"PeriodicalIF":10.6,"publicationDate":"2024-03-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0098299724000190/pdfft?md5=018e5de2d724aea9ee0fca5188ab4b66&pid=1-s2.0-S0098299724000190-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140052684","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-03-02DOI: 10.1016/j.mam.2024.101257
Shilong You , Jiaqi Xu , Yushan Guo , Xiaofan Guo , Ying Zhang , Naijin Zhang , Guozhe Sun , Yingxian Sun
Mammalian E3 ubiquitin ligases have emerged in recent years as critical regulators of cellular homeostasis due to their roles in targeting substrate proteins for ubiquitination and triggering subsequent downstream signals. In this review, we describe the multiple roles of WWP2, an E3 ubiquitin ligase with unique and important functions in regulating a wide range of biological processes, including DNA repair, gene expression, signal transduction, and cell-fate decisions. As such, WWP2 has evolved to play a key role in normal physiology and diseases, such as tumorigenesis, skeletal development and diseases, immune regulation, cardiovascular disease, and others. We attempt to provide an overview of the biochemical, physiological, and pathophysiological roles of WWP2, as well as open questions for future research, particularly in the context of putative therapeutic opportunities.
{"title":"E3 ubiquitin ligase WWP2 as a promising therapeutic target for diverse human diseases","authors":"Shilong You , Jiaqi Xu , Yushan Guo , Xiaofan Guo , Ying Zhang , Naijin Zhang , Guozhe Sun , Yingxian Sun","doi":"10.1016/j.mam.2024.101257","DOIUrl":"https://doi.org/10.1016/j.mam.2024.101257","url":null,"abstract":"<div><p>Mammalian E3 ubiquitin ligases have emerged in recent years as critical regulators of cellular homeostasis due to their roles in targeting substrate proteins for ubiquitination and triggering subsequent downstream signals. In this review, we describe the multiple roles of WWP2, an E3 ubiquitin ligase with unique and important functions in regulating a wide range of biological processes, including DNA repair, gene expression, signal transduction, and cell-fate decisions. As such, WWP2 has evolved to play a key role in normal physiology and diseases, such as tumorigenesis, skeletal development and diseases, immune regulation, cardiovascular disease, and others. We attempt to provide an overview of the biochemical, physiological, and pathophysiological roles of WWP2, as well as open questions for future research, particularly in the context of putative therapeutic opportunities.</p></div>","PeriodicalId":49798,"journal":{"name":"Molecular Aspects of Medicine","volume":"96 ","pages":"Article 101257"},"PeriodicalIF":10.6,"publicationDate":"2024-03-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140014595","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}