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Food patch selection by the largest European herbivore 欧洲最大食草动物对食物区的选择
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-06-04 DOI: 10.1007/s42991-024-00426-2
Rafał Kowalczyk, Tomasz Kamiński, Tomasz Borowik

The scaling relationship between digestive system and body mass shapes foraging strategies in herbivores. The Jarman–Bell principle and the forage maturation hypothesis (FMH), two of the most important predictions formulated in herbivore foraging ecology, have been used to explain this relationship.We aimed to test these predictions for the largest European herbivore—the European bison-which is highly sexually dimorphic and recognised as a refugee species in non-optimal forest habitats. We conducted our study in the Białowieża Primeval Forest, where the European bison has been recognized as a refugee species. We estimated vegetation quality and biomass along the foraging paths of male and female European bison, and the vegetation biomass at random points in different habitats and months. We found no support for the Jarmann-Bell principle at the intraspecific level in European bison, as males and females foraged on patches of similar crude protein and fibre content. However, females selected for higher biomass. The quality of vegetation on the bison foraging patches showed a significant spatio-temporal variation. It increased from May to July and then gradually decreased. It also increased with the fertility and wetness of the habitats being the highest in wet forests. Mean biomass on European bison foraging patches (131.5 g/m2), was significantly lower than on random plots (210.5 g/m2), which supported the FMH. Our study suggests that in rich forest habitats, the abundant food resources available in summer may not constrain the metabolic rate/gut capacity ratio of either sex, potentially leading to dietary segregation. In contrast to open habitats, where vegetation maturation is less temporally variable, European bison in rich forest habitats may optimise patch selection and energy intake by tracking a habitat- and species-specific changes in the plant phenology. Understanding the relationship between European bison forage selection and forage nutritional constraints in forest habitats may be critical for conservation programmes, as European bison are better adapted to more open habitats and are recognised as refugee species in suboptimal forest habitats.

消化系统与体重之间的比例关系决定了食草动物的觅食策略。贾曼-贝尔原理和觅食成熟假说(FMH)是食草动物觅食生态学中提出的两个最重要的预言,被用来解释这种关系。我们的目的是对欧洲最大的食草动物--欧洲野牛--的这些预言进行检验,欧洲野牛具有高度的性别二形性,被认为是非最佳森林栖息地的难民物种。我们在 Białowieża 原始森林进行了研究,欧洲野牛在这里被认定为难民物种。我们估算了雄性和雌性欧洲野牛觅食路线上的植被质量和生物量,以及不同栖息地和月份随机点的植被生物量。我们发现,在欧洲野牛的种内水平上,雄性和雌性在粗蛋白和纤维含量相似的斑块上觅食,这并不支持雅曼-贝尔原理。不过,雌性野牛会选择生物量较高的地方。野牛觅食斑块上的植被质量呈现出显著的时空变化。从 5 月到 7 月,植被质量有所上升,然后逐渐下降。植被质量也随着栖息地的肥沃度和湿度而增加,在湿润的森林中植被质量最高。欧洲野牛觅食斑块的平均生物量(131.5 g/m2)明显低于随机地块(210.5 g/m2),这支持了FMH的观点。我们的研究表明,在富饶的森林栖息地,夏季丰富的食物资源可能不会限制雌雄野牛的代谢率/肠道容量比,从而可能导致雌雄野牛的饮食隔离。与植被成熟的时间变化较小的开阔栖息地相比,富饶森林栖息地中的欧洲野牛可能会通过跟踪栖息地和物种特有的植物物候变化来优化斑块选择和能量摄入。了解欧洲野牛在森林栖息地的饲料选择和饲料营养限制之间的关系可能对保护计划至关重要,因为欧洲野牛能更好地适应更开阔的栖息地,并被认为是次优森林栖息地的难民物种。
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引用次数: 0
Sexual dimorphisms in body proportions of Masai giraffes and the evolution of the giraffe’s neck 马赛长颈鹿身体比例的性别异形和长颈鹿颈部的进化
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-06-03 DOI: 10.1007/s42991-024-00424-4
Douglas R. Cavener, Monica L. Bond, Lan Wu-Cavener, George G. Lohay, Mia W. Cavener, Xiaoyi Hou, David L. Pearce, Derek E. Lee

Giraffes exhibit a large sexual dimorphism in body size. Whether sexual dimorphisms also exist in body proportions of the axial and appendicular skeleton has been debated, particularly regarding the giraffe’s iconic long neck. We examined the anatomical proportions of the neck, forelegs, hindlegs, and body trunk of the Masai giraffe (G. tippelskirchi) in captive and wild populations. We found that female Masai giraffes have proportionally longer necks relative to their forelegs than males in contradiction to the original necks-for-sex hypothesis that proposed that the evolution of the giraffe’s long neck was driven by male-male competition. However, male neck width and apparent mass are proportionally larger than females’, supporting a modification of the necks-for-sex hypothesis. Moreover, male foreleg length is proportionally longer whereas female trunk length is proportionally longer. These sexual dimorphisms were found in both captive and wild Masai giraffes. We speculate that the initial evolution of the giraffe’s long neck and legs was driven by interspecific competition and the maternal nutritional demands of gestation and lactation through natural selection to gain a competitive advantage in browsing, and then later the neck mass was further increased as a consequence of male-male competition and sexual selection. Differences in the proportions of major body components define sex phenotypes, but several giraffes display opposite-sex phenotypes with a significantly higher level of discordancy seen in captive males. We speculate that body proportion sexual dimorphisms are maintained in the wild by natural and/or sexual selection, but in captivity selection is relaxed resulting in a higher occurrence of discordances in sexual phenotypes.

长颈鹿在体型上表现出很大的性别二形性。关于长颈鹿的标志性长颈是否也存在身体轴向和附属骨骼比例上的性双态性,一直存在争议。我们研究了马赛长颈鹿(G. tippelskirchi)在圈养种群和野生种群中的颈部、前腿、后腿和身体躯干的解剖比例。我们发现,与雄性长颈鹿相比,雌性马赛长颈鹿的颈部相对于前腿更长,这与最初的 "颈部性别假说 "相矛盾,"颈部性别假说 "认为长颈鹿长颈的进化是由雄性长颈鹿之间的竞争驱动的。然而,雄性长颈鹿的颈宽和表观质量在比例上要大于雌性长颈鹿,这支持了颈部性别假说的修正。此外,雄性的前肢长度按比例来说更长,而雌性的躯干长度按比例来说更长。在圈养和野生马赛长颈鹿中都发现了这些性二态现象。我们推测,长颈鹿长颈和长腿的最初进化是由种间竞争以及妊娠和哺乳期的母性营养需求驱动的,通过自然选择获得了浏览方面的竞争优势,后来由于雄性与雄性之间的竞争和性选择,颈部质量进一步增加。身体主要组成部分比例的差异决定了性别表型,但有几种长颈鹿表现出相反的性别表型,其中圈养雄性长颈鹿的不和谐程度明显更高。我们推测,身体比例的性别二形性在野外是通过自然选择和/或性选择来维持的,但在人工饲养条件下,选择被放松,导致性表型不一致的发生率更高。
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引用次数: 0
The effects of keystone resources and landscape of fear in modulating the spatiotemporal use of paca (Cuniculus paca) in Brazilian Atlantic Forest 关键资源和恐惧景观对巴西大西洋森林中鼠鼬时空利用的影响
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-05-28 DOI: 10.1007/s42991-024-00425-3
Mateus Melo-Dias, Rayssa F. Pedroso, Clarissa Rosa, Rodrigo L. Massara, Letícia G. Ribeiro, Marcelo Passamani

Paca (Cuniculus paca) is a medium-sized caviomorph rodent that plays an important role in the dynamics of plant and animal diversity in Neotropical forests. Despite being a generalist species, habitat use can be influenced by the availability of resources, cover, and shelter, but also by the landscape of fear. We investigated whether paca habitat use is mainly driven by resource availability and/or the landscape of fear in a spatiotemporal context in the Atlantic Forest montane of Brazil. We used camera traps and generalized least squares models to investigate the influence of lunar phases on the modulation of environmental factors in paca habitat use and the effects on the prey–predator activity pattern. The availability of food resources, specifically Juçara palm (Euterpe edulis) and Paraná pine (Araucaria angustifolia), was the best predictor to explain paca habitat use, regardless of moonlight. These threatened and dominant trees provide keystone resources for paca safely and efficiently in the study area. However, we found that moonlight can alter the importance of the effect of its main predator (Puma concolor), on the spatiotemporal use of the paca. The risk of predation has a greater impact on the paca's habitat use during phases of intense moonlight, and as an anti-predation strategy, the paca changes its activity pattern precisely during these periods. Although the conservation status of the paca is of least concern, our results have highlighted its important ecosystem role in Neotropical forests, interacting strongly with key and threatened species of the Atlantic Forest.

帕卡(Cuniculus paca)是一种中型腔肠动物,在新热带森林的动植物多样性动态中扮演着重要角色。尽管是一种通性物种,但栖息地的利用会受到资源、覆盖物和庇护所的可用性的影响,同时也会受到恐惧景观的影响。我们研究了巴西大西洋山地森林中鼠驼栖息地的利用是否主要受资源可用性和/或时空背景下恐惧景观的影响。我们使用照相陷阱和广义最小二乘法模型研究了月相对环境因素对鼠驼栖息地利用的调节作用以及对猎物-捕食者活动模式的影响。无论月光如何,食物资源的可获得性,特别是Juçara棕榈树(Euterpe edulis)和巴拉那松树(Araucaria angustifolia)的可获得性,是解释蟒蛇栖息地利用的最佳预测因素。这些濒危的优势树种为研究区的美洲茶猿安全有效地提供了基石资源。然而,我们发现月光会改变其主要捕食者(美洲狮)对美洲狮时空利用影响的重要性。在月光强烈的阶段,捕食风险对美洲狮栖息地的利用有更大的影响,作为一种反捕食策略,美洲狮恰恰会在这些时期改变其活动模式。尽管美洲狮的保护状况最不值得关注,但我们的研究结果突出了它在新热带森林生态系统中的重要作用,它与大西洋森林中的关键物种和濒危物种有着密切的互动关系。
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引用次数: 0
The presence of two distinct mitochondrial lineages in the bottlenose dolphin (Tursiops truncatus) in Puerto Rico and their affinities with previously reported lineages 波多黎各瓶鼻海豚(Tursiops truncatus)中存在两个不同的线粒体系及其与先前报告的系的亲缘关系
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-05-28 DOI: 10.1007/s42991-024-00423-5
Grisel Rodriguez-Ferrer, Richard S. Appeldoorn, Antonio A. Mignucci-Giannoni, Renaldo Rinaldi, Nikolaos V. Schizas

Sound management of coastal resources is based on science-based decisions. Bottlenose dolphins are found around Puerto Rico; however, limited information exists on the ecology, behavior, sex ratio, distribution patterns, and population structure presenting, challenges in managing the bottlenose dolphin as defined in the Marine Mammal Protection Act of 1972. We sequenced the mitochondrial control region (mtDNA-CR) of 27 live and 11 stranded dolphins from Puerto Rico, five stranded dolphins from Guadeloupe and included sequences from the North Atlantic and the Pacific Ocean. Our genetic data from the new samples indicates the presence of distinct genetic lineages (inshore—represented by coastal individuals) and worldwide-distributed form (represented by both coastal and offshore individuals) in Puerto Rico. DNA divergence between inshore/coastal and offshore haplotypes ranged from 4.34 to 6.58%. All haplotypes from Puerto Rico have been previously reported from the Caribbean and North Atlantic. Genetic analysis yielded a complex population structure without a clear geographic signal; an expected result from a highly mobile marine mammal. A clade consisting exclusively of coastal dolphins of the Caribbean and the western North Atlantic was recovered. Offshore haplotypes from the eastern and western North Atlantic were generally clustered with offshore haplotypes of the Caribbean. Coastal and offshore haplotypes from the Pacific differed from those from the Atlantic. When we partitioned the data by form (coastal vs. offshore) and ocean (Atlantic vs. Pacific), we detected significant population differentiation (FST = 0.4089), indicating limited gene flow between forms and across oceans.

沿海资源的合理管理以科学决策为基础。波多黎各周围发现了瓶鼻海豚;然而,有关其生态学、行为、性别比例、分布模式和种群结构的信息有限,这给 1972 年《海洋哺乳动物保护法》所定义的瓶鼻海豚管理带来了挑战。我们对波多黎各的 27 条活体海豚和 11 条搁浅海豚以及瓜德罗普岛的 5 条搁浅海豚的线粒体控制区(mtDNA-CR)进行了测序,其中包括来自北大西洋和太平洋的序列。我们从新样本中获得的遗传数据表明,波多黎各存在独特的遗传系(近岸--以沿海个体为代表)和世界分布形式(以沿海和近海个体为代表)。近岸/沿海与离岸单倍型之间的 DNA 差异范围为 4.34% 至 6.58%。波多黎各的所有单倍型以前在加勒比海和北大西洋都有报道。遗传分析得出了一个复杂的种群结构,没有明确的地理信号;这是一种高流动性海洋哺乳动物的预期结果。一个仅由加勒比海和北大西洋西部沿海海豚组成的支系被发现。来自北大西洋东部和西部的近海单倍型一般与加勒比海的近海单倍型聚集在一起。太平洋的沿海和近海单倍型与大西洋的不同。当我们按形式(沿海与近海)和海洋(大西洋与太平洋)对数据进行划分时,我们发现了显著的种群分化(FST = 0.4089),这表明不同形式之间和不同海洋之间的基因流动有限。
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引用次数: 0
Habitat selection of the arboreal marsupial Dromiciops gliroides and potential effects on the seed dispersal of the mistletoe Tristerix corymbosus 树栖有袋类动物 Dromiciops gliroides 的栖息地选择及其对槲寄生种子传播的潜在影响
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-05-21 DOI: 10.1007/s42991-024-00422-6
Agustina Balazote Oliver, Laila D. Kazimierski, G. Amico, Juan M. Morales
{"title":"Habitat selection of the arboreal marsupial Dromiciops gliroides and potential effects on the seed dispersal of the mistletoe Tristerix corymbosus","authors":"Agustina Balazote Oliver, Laila D. Kazimierski, G. Amico, Juan M. Morales","doi":"10.1007/s42991-024-00422-6","DOIUrl":"https://doi.org/10.1007/s42991-024-00422-6","url":null,"abstract":"","PeriodicalId":49888,"journal":{"name":"Mammalian Biology","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2024-05-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141118093","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Of greater noctule “migration” from Russia to Italy: a comment on Vasenkov et al. (2023) 从俄罗斯到意大利的大夜虫 "迁移":对 Vasenkov 等人(2023 年)的评论
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-05-21 DOI: 10.1007/s42991-024-00421-7
D. Russo, Anne Mäenurm, Adriano Martinoli, L. Cistrone
{"title":"Of greater noctule “migration” from Russia to Italy: a comment on Vasenkov et al. (2023)","authors":"D. Russo, Anne Mäenurm, Adriano Martinoli, L. Cistrone","doi":"10.1007/s42991-024-00421-7","DOIUrl":"https://doi.org/10.1007/s42991-024-00421-7","url":null,"abstract":"","PeriodicalId":49888,"journal":{"name":"Mammalian Biology","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2024-05-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141113896","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
No evidence of sex-related differences in the diet of giant anteater in the Brazilian savanna 没有证据表明巴西热带草原上巨食蚁兽的饮食与性别有关
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-05-20 DOI: 10.1007/s42991-024-00420-8
Tainara Galvao Santana, N. Attias, Natalia Teixeira Nascimento, Mariáh Tibcherani, M. Rocha, A. Desbiez
{"title":"No evidence of sex-related differences in the diet of giant anteater in the Brazilian savanna","authors":"Tainara Galvao Santana, N. Attias, Natalia Teixeira Nascimento, Mariáh Tibcherani, M. Rocha, A. Desbiez","doi":"10.1007/s42991-024-00420-8","DOIUrl":"https://doi.org/10.1007/s42991-024-00420-8","url":null,"abstract":"","PeriodicalId":49888,"journal":{"name":"Mammalian Biology","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2024-05-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141123393","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Assessing the influence of body size on patterns of dietary niche segregation among the ungulate community in Yellowstone National Park, USA 评估体型对美国黄石国家公园有蹄类动物群落膳食生态位隔离模式的影响
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-05-15 DOI: 10.1007/s42991-024-00419-1
L. Eastham, Robert S. Feranec
{"title":"Assessing the influence of body size on patterns of dietary niche segregation among the ungulate community in Yellowstone National Park, USA","authors":"L. Eastham, Robert S. Feranec","doi":"10.1007/s42991-024-00419-1","DOIUrl":"https://doi.org/10.1007/s42991-024-00419-1","url":null,"abstract":"","PeriodicalId":49888,"journal":{"name":"Mammalian Biology","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2024-05-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140975171","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
UCE-derived mitochondrial phylogeny reveals pervasive mito-nuclear discordances in serotine bats (genus Eptesicus) and complex evolutionary history in Eptesicus (Histiotus) UCE 衍生的线粒体系统进化揭示了锯齿蝙蝠(Eptesicus 属)普遍存在的有丝分裂-核不一致性以及 Eptesicus(Histiotus)复杂的进化历史
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-05-15 DOI: 10.1007/s42991-024-00418-2
Xueling Yi, Emily K Latch, B. Lim, R. Koroiva, P. D. da Rocha, Anderson Feijó
{"title":"UCE-derived mitochondrial phylogeny reveals pervasive mito-nuclear discordances in serotine bats (genus Eptesicus) and complex evolutionary history in Eptesicus (Histiotus)","authors":"Xueling Yi, Emily K Latch, B. Lim, R. Koroiva, P. D. da Rocha, Anderson Feijó","doi":"10.1007/s42991-024-00418-2","DOIUrl":"https://doi.org/10.1007/s42991-024-00418-2","url":null,"abstract":"","PeriodicalId":49888,"journal":{"name":"Mammalian Biology","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2024-05-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140975556","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genetic chronicle of the capybara: the complete mitochondrial genome of Hydrochoerus hydrochaeris 水豚的基因编年史:水豚完整的线粒体基因组
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-04-30 DOI: 10.1007/s42991-024-00417-3
Iuri Batista da Silva, Fabiano Bezerra Menegídio, Caroline Garcia, Karine Frehner Kavalco, Rubens Pasa

The capybara, Hydrochoerus hydrochaeris, is a rodent that inhabits the wetlands of South America. Despite being widely distributed and having the nuclear genomes available, there has been a lack of information regarding the mitochondrial genome. To address this, we conducted the assembly and annotation of the capybara’s mitochondrial genome and reconstructed the phylogeny of Parvorder Caviomorpha. The assembly was conducted under the de novo method with GetOrganelle, while the annotation was performed with MitoZ. Analysis of relative codon synonymous usage was conducted in the mitochondrial genomes of the capybara and two other Caviidae species: Cavia porcellus and Cavia aperea. The phylogenetic inference was conducted under the Maximum Likelihood method, using the 13 protein-coding genes, including the capybara as well as other 42 Caviomorpha mitochondrial genomes. The resulting capybara mitochondrial genome consisted of 16,681 bp, 37 genes (22 tRNAs, 2 rRNAs, and 13 protein-coding genes) and a control region. The number of genes and their arrangement corresponds to the pattern observed in most mammalian species. The capybara was recovered as a sister group of Cavia. Caviidae was reconstructed as a monophyletic group that is closely related to Cuniculidae. Overall, this study provides valuable insights into the mitochondrial evolution and evolutionary relationships of the capybara.

水豚(Hydrochoerus hydrochaeris)是一种栖息于南美洲湿地的啮齿动物。尽管水豚分布广泛,而且拥有核基因组,但线粒体基因组方面的信息却很缺乏。为了解决这个问题,我们对水豚的线粒体基因组进行了组装和注释,并重建了鱼纲(Parvorder Caviomorpha)的系统发育。组装是通过 GetOrganelle 进行的,而注释则是通过 MitoZ 进行的。对水豚和其他两种鱼腥科动物的线粒体基因组进行了相对同义密码子使用分析:Cavia porcellus 和 Cavia aperea。系统发生推断采用最大似然法,使用了 13 个编码蛋白质的基因,包括水豚和其他 42 种鱼腥科动物的线粒体基因组。最后得出的水豚线粒体基因组包括 16,681 bp、37 个基因(22 个 tRNA、2 个 rRNA 和 13 个蛋白编码基因)和一个控制区。基因的数量及其排列方式与大多数哺乳动物物种的基因排列方式一致。水豚被认为是豚科的姊妹群。Caviidae被重建为一个与Cuniculidae密切相关的单系群。总之,这项研究为研究水豚的线粒体进化和进化关系提供了宝贵的见解。
{"title":"Genetic chronicle of the capybara: the complete mitochondrial genome of Hydrochoerus hydrochaeris","authors":"Iuri Batista da Silva, Fabiano Bezerra Menegídio, Caroline Garcia, Karine Frehner Kavalco, Rubens Pasa","doi":"10.1007/s42991-024-00417-3","DOIUrl":"https://doi.org/10.1007/s42991-024-00417-3","url":null,"abstract":"<p>The capybara, <i>Hydrochoerus hydrochaeris</i>, is a rodent that inhabits the wetlands of South America. Despite being widely distributed and having the nuclear genomes available, there has been a lack of information regarding the mitochondrial genome. To address this, we conducted the assembly and annotation of the capybara’s mitochondrial genome and reconstructed the phylogeny of Parvorder Caviomorpha. The assembly was conducted under the de novo method with GetOrganelle, while the annotation was performed with MitoZ. Analysis of relative codon synonymous usage was conducted in the mitochondrial genomes of the capybara and two other Caviidae species: <i>Cavia porcellus</i> and <i>Cavia aperea.</i> The phylogenetic inference was conducted under the Maximum Likelihood method, using the 13 protein-coding genes, including the capybara as well as other 42 Caviomorpha mitochondrial genomes. The resulting capybara mitochondrial genome consisted of 16,681 bp, 37 genes (22 tRNAs, 2 rRNAs, and 13 protein-coding genes) and a control region. The number of genes and their arrangement corresponds to the pattern observed in most mammalian species. The capybara was recovered as a sister group of <i>Cavia</i>. Caviidae was reconstructed as a monophyletic group that is closely related to Cuniculidae. Overall, this study provides valuable insights into the mitochondrial evolution and evolutionary relationships of the capybara.</p>","PeriodicalId":49888,"journal":{"name":"Mammalian Biology","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2024-04-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140826867","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Mammalian Biology
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