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Between the lines: mitochondrial lineages in the heavily managed red deer population of Belarus 字里行间:管理严格的白俄罗斯马鹿种群的线粒体系谱
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-02-02 DOI: 10.1007/s42991-023-00397-w
Arseni A. Valnisty, Kanstantsin V. Homel, Ekaterina E. Kheidorova, Vladislav O. Molchan, Mikhael Y. Nikiforov

Here we report the first thorough genetic characterization of the long-understudied red deer population of Belarus in regards to its ancestry according to mtDNA sequence analysis. Employing a 346 base pair segment of the mitochondrial control region (d-loop) from 36 deer specimens of either sex recently harvested across the country, we have discovered 10 haplotypes belonging to 3 of the widely described European red deer lineages, or haplogroups: Iberian (A), Tyrrhenian (B), and Maraloid (E), clarifying the range limits of those lineages in the region. Combining this data with a comparative analysis of genetic diversity and historical records, we conclude that the Belarusian population of red deer has an artificially mixed origin, though it remains unclear how desirable such a state is, in terms of sustainable management, use, and conservation. Inquiries into ancient DNA are required to recognize the lineages closest to the autochthonous deer population of Belarus.

在此,我们首次根据 mtDNA 序列分析,对长期以来研究不足的白俄罗斯马鹿种群的祖先进行了全面的遗传特征描述。我们利用最近在全国各地采集的 36 头鹿标本的线粒体控制区(d 环)的 346 个碱基对片段,发现了属于 3 个广泛描述的欧洲赤鹿系或单倍群的 10 个单倍型:伊比利亚系(A)、第勒尼安系(B)和马拉罗德系(E),明确了这些系在该地区的分布范围。将这些数据与遗传多样性和历史记录的比较分析相结合,我们得出结论,白俄罗斯的马鹿种群具有人工混血的起源,但这种状态在可持续管理、利用和保护方面的可取性如何,目前仍不清楚。需要对古 DNA 进行研究,以确认最接近白俄罗斯本土鹿群的血统。
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引用次数: 0
Comparing direct (live-trapping) and indirect (camera-trapping) approaches for estimating the abundance of weasels (Mustela nivalis) 比较直接(活体诱捕)和间接(相机诱捕)估算黄鼬数量的方法
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-01-19 DOI: 10.1007/s42991-023-00394-z
Tim R. Hofmeester, Jeroen Mos, Karol Zub

Information on the presence and abundance of a species is crucial for understanding key ecological processes but also for effective protection and population management. Collecting data on cryptic species, like small mustelids, is particularly challenging and often requires the use of non-invasive methods. Despite recent progress in the development of camera trap-based devices and statistical models to estimate the abundance of unmarked individuals, their application for studying this group of mammals is still very limited. We compared direct (live-trapping) and indirect (an enclosed camera-trapping approach—the Mostela system) survey methods to estimate the population size of weasels (Mustela nivalis) inhabiting open grasslands in Northeast Poland over a period of four years. We also live-trapped voles to determine prey availability. We used a Royle–Nichols model to estimate yearly (relative) abundance from the camera-trapping data in a Bayesian framework. The total number of live-captured weasels showed a similar change over time as the relative abundance of weasels estimated using camera-trap data. Moreover, estimates of weasel abundance increased with the availability of their main prey. Our study is part of a growing body of work showing that camera traps can provide a useful non-invasive method to estimate the relative abundance of small mustelids. Moreover, a combination of data from camera traps with statistical models allowed us to track the changes in weasel number over time. This information could be very useful for the conservation of small mustelids as well as their management in regions where they are invasive.

有关一个物种的存在和丰度的信息对于了解关键的生态过程以及有效的保护和种群管理都至关重要。收集小型鼬类等隐蔽物种的数据尤其具有挑战性,通常需要使用非侵入性方法。尽管最近在开发基于相机陷阱的设备和统计模型以估计无标记个体的丰度方面取得了进展,但它们在研究这类哺乳动物方面的应用仍然非常有限。我们比较了直接(活体诱捕)和间接(封闭式相机诱捕方法--Mostela系统)调查方法,以估计波兰东北部开阔草原上栖息的黄鼬(Mustela nivalis)的种群数量,为期四年。我们还对田鼠进行了活体诱捕,以确定猎物的可用性。我们使用罗伊尔-尼科尔斯模型,在贝叶斯框架下从相机诱捕数据中估计每年的(相对)丰度。活体捕获的黄鼠狼总数与使用相机诱捕数据估算的黄鼠狼相对丰度随时间的变化情况相似。此外,黄鼠狼丰度的估计值随着其主要猎物的出现而增加。越来越多的研究表明,相机捕捉器可以提供一种有用的非侵入式方法来估计小型鼬科动物的相对丰度,我们的研究就是其中的一部分。此外,通过将相机陷阱的数据与统计模型相结合,我们可以跟踪黄鼬数量随时间的变化。这些信息对于小型鼬科动物的保护以及入侵地区的管理非常有用。
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引用次数: 0
Small-bodied mammal diversity facets vary discretely across an understudied ecotone in the western Amazon-Cerrado 在亚马逊--热带雨林西部一个研究不足的生态区,小体型哺乳动物的多样性各不相同
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-01-19 DOI: 10.1007/s42991-023-00393-0

Abstract

Tropical forests and savannahs worldwide are yielding to agribusiness, impacting biodiversity. In the southern Amazon deforestation arc, deforestation progress and limited study of extensive areas result in knowledge gaps on the impacts on biodiversity. We examined patterns of small-bodied mammal species diversity along a gradient ranging from closed-canopy to open-area savannahs, in the Guaporé river basin, Brazil. During one temporal replica—between December 2011 and October 2012—we sampled small mammals using live-traps in seven sites along three 1 km transects each. We assessed and predicted species alpha-diversity (within site), beta-diversity (unshared between sites), and zeta-diversity (shared) across the gradient, relating each biodiversity facets to the sites habitat structure, including vegetation height and above-ground biomass. From 202 individuals recorded, we uncovered 18 species in the region, whereas alpha-diversity was similar between sites, the species composition discretely shifted from non-floodable terra firme to open-areas of the transition zone southwards. Sites located at the intermediary zones of the north–south axis had lower beta-diversity contributions in comparison with northern- and southernmost sites, suggesting mixed biome influences. Zeta-diversity declined rapidly from closer sites to the more distant ones. Along the middle Guaporé basin, small mammal distribution correspondingly reflected the influence of the Cerrado and Amazon. Species presence—and cryptic diversity in terms of species not recorded yet—highlights conserving extensive habitats to accommodate diverse regional-local diversity needs, whereas both beta- and zeta-diversity patterns reveal that sites distinctiveness and multiple assemblages are required to safeguard the regional-scale diversity.

摘要 全世界的热带森林和稀树草原都在向农业综合企业屈服,对生物多样性造成了影响。在亚马逊森林砍伐弧的南部,森林砍伐的进展和对大面积区域的有限研究造成了对生物多样性影响的知识空白。我们考察了巴西瓜波雷河流域从封闭树冠到开阔地热带稀树草原梯度上小型哺乳动物物种多样性的模式。在 2011 年 12 月至 2012 年 10 月的一个时间段内,我们使用活体诱捕器对七个地点的小型哺乳动物进行了采样,每个地点有三个 1 千米的横断面。我们评估并预测了整个梯度上的物种α-多样性(地点内)、β-多样性(地点间不共享)和zeta-多样性(共享),并将每个生物多样性方面与地点的栖息地结构(包括植被高度和地上生物量)联系起来。从记录的202个个体中,我们发现了该地区的18个物种,虽然不同地点之间的α-多样性相似,但物种组成从不可淹没的陆地向南逐渐向过渡带的开阔地区转移。与最北和最南的地点相比,位于南北轴中间地带的地点的贝塔多样性较低,这表明生物群落受到混合影响。从较近的地点到较远的地点,Zeta-多样性迅速下降。在瓜波雷盆地中部,小型哺乳动物的分布相应地反映了塞拉多和亚马逊的影响。物种的存在--以及尚未记录的物种的隐性多样性--凸显了保护广阔栖息地以满足区域-地方多样性需求的重要性,而β-和zeta-多样性模式则揭示了保护区域范围多样性所需的地点独特性和多重组合。
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引用次数: 0
Allosuckling in southern right whale calves 南露脊鲸幼鲸的异食癖
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-01-18 DOI: 10.1007/s42991-023-00392-1
Kate R. Sprogis, Fredrik Christiansen

Allosuckling, the suckling of milk from a non-biological mother, occurs in some species of mammals. Allosuckling has not been quantified in baleen whale calves; therefore, we examine allosuckling in southern right whales (SRWs; Eubalaena australis) off Australia. SRWs are listed as Endangered under the Australian Environment Protection and Biodiversity Conservation Act as their numbers remain below the estimated historical abundance. On a small aggregation area, where there were three mother–calf pairs present, we aimed to quantify the proportion of time that calves allosuckled relative to the time spent filial suckling. To achieve this, we conducted unmanned aerial vehicle focal follows on mother–calf pairs and video recorded all interactions among pairs (n = 22 interactions, 3 h total observation time). During interactions, allosuckling occurred in seven interactions, and filial nursing occurred in 11 interactions. One of the calves performed allosuckling, and it was the largest calf with the largest mother. The calf allosuckled from both of the non-biological mothers present. The average proportion of time allosuckling per interaction was 4% (95% CI = ± 0.01, range = 0–0.25), whilst filial nursing for the same calf was 8% (95% CI = ± 0.02, range = 0–0.37). It is important to understand the frequency of allosuckling, and to quantify the energetic benefits for allosuckling calves and the energetic cost incurred by targeted non-biological mothers. This is particularly pertinent for capital breeders who do not replenish lost energy reserves until they migrate to their feeding grounds.

异吸吮,即从非亲生母亲那里吸吮乳汁,在某些哺乳动物物种中会出现。我们尚未对须鲸幼鲸的异吸乳现象进行量化研究,因此,我们将对澳大利亚近海的南露脊鲸(SRWs;Eubalaena australis)的异吸乳现象进行研究。根据《澳大利亚环境保护和生物多样性保护法》,南露脊鲸被列为濒危物种,因为其数量仍低于历史估计丰度。在一个有三对母牛的小型聚集区,我们的目标是量化小牛异吸吮时间与孝顺吸吮时间的比例。为此,我们对母牛和小牛进行了无人机跟踪,并对母牛和小牛之间的所有互动进行了录像(n = 22 次互动,总观察时间为 3 小时)。在互动过程中,有 7 次发生了异位吸吮,11 次发生了孝顺哺乳。其中一只小牛进行了异吸吮,它是最大的小牛,与最大的母亲进行了异吸吮。这头小牛从在场的两个非亲生母亲那里进行了异吸吮。每次互动的平均异体吸吮时间比例为 4%(95% CI = ± 0.01,范围 = 0-0.25),而同一只小牛的孝顺哺乳时间比例为 8%(95% CI = ± 0.02,范围 = 0-0.37)。了解异体哺乳的频率、量化异体哺乳犊牛的能量收益以及目标非亲生母亲的能量成本非常重要。这对资本繁殖者尤为重要,因为它们在迁徙到觅食地之前不会补充损失的能量储备。
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引用次数: 0
From isolation to integration: assessing habitat connectivity of the endangered saiga antelope in Mongolia 从隔离到融合:评估蒙古濒危赛加羚羊栖息地的连通性
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-01-16 DOI: 10.1007/s42991-023-00391-2
Buyanaa Chimeddorj, Bayarbaatar Buuveibaatar, Naranbaatar Galsandorj, Sanjmyatav Dolgorjav, Nyamkhuu Myanganbuu, Gantulga Bayandonoi, Sundev Gombobaatar

This study provides the first comprehensive assessment of habitat connectivity for the Mongolian saiga, a species endemic to Western Mongolia. We utilized a resource selection function (RSF) to identify core habitats (CHs) throughout the saiga’s entire range. Additionally, the Circuitscape approach was employed to map the least-cost paths (LCPs) among these core habitats. The RSF models revealed a strong preference for high productivity areas, while avoiding disturbed regions. Through a spatially explicit model, 34 CHs covering an area of 12,480 km2 (30.7% of the saiga’s range) were identified. The connectivity models identified 68 LCPs between various pairs of CHs, totaling 1700 km in length across the entire saiga range. The core habitat in the center of the saiga range displayed the highest centrality scores, highlighting their critical importance in maintaining their habitat interconnectedness. Furthermore, the presence of pinch points was observed in several CH pairs within the northwest region, suggesting potential bottlenecks that may hinder movement between these habitats. It is imperative to implement measures aimed at addressing these pinch points and establishing secure corridors to facilitate the saiga movement between the CHs. To ensure the survival of the saiga, it is also crucial to mitigate the impact of existing and planned linear infrastructures, as well as other human disturbances that have the potential to fragment habitats and disrupt connectivity. These findings serve as valuable insights for targeted conservation efforts and the formulation of effective management strategies geared toward safeguarding this iconic species in Western Mongolia.

本研究首次对蒙古西伯利亚特有物种蒙古赛加的栖息地连通性进行了全面评估。我们利用资源选择功能(RSF)确定了赛加整个分布区的核心栖息地(CHs)。此外,我们还采用了环景方法来绘制这些核心栖息地之间的最低成本路径(LCP)。RSF 模型揭示了赛加对高生产力地区的强烈偏好,同时避开了受干扰地区。通过空间显式模型,确定了 34 个 CH,覆盖面积达 12,480 平方公里(占赛加分布区的 30.7%)。连通性模型在不同的CHs对之间确定了68个LCPs,整个赛加分布区总长度达1700公里。位于箭猪分布区中心的核心栖息地显示出最高的中心性得分,凸显出它们在保持栖息地相互连接方面的关键重要性。此外,在西北部地区的几个CH对中观察到了夹点的存在,这表明这些栖息地之间可能存在阻碍其移动的潜在瓶颈。当务之急是采取措施解决这些夹点问题,并建立安全走廊,以促进赛加在CHs之间的移动。为确保赛加的生存,还必须减轻现有和规划中的线性基础设施以及其他可能造成栖息地破碎和连接中断的人为干扰的影响。这些发现为有针对性地开展保护工作和制定有效的管理策略提供了宝贵的见解,从而保护蒙古西部的这一标志性物种。
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引用次数: 0
Molecular phylogeny and historical biogeography of Iranian murids (Rodentia: Muridae) 伊朗鼠类(啮齿目:鼠科)的分子系统学和历史生物地理学
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-01-12 DOI: 10.1007/s42991-023-00390-3
Yaser Amir Afzali, Raquel López-Antoñanzas
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引用次数: 0
Mitochondrial genetic diversity and haplotype distribution of golden jackal (Canis aureus, Linnaeus 1758) in Iran, a bridge from India to North Europe 从印度到北欧的桥梁--伊朗金毛豺(Canis aureus, Linnaeus 1758)的线粒体遗传多样性和单倍型分布
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-01-11 DOI: 10.1007/s42991-023-00389-w
Davood Milanlou, Davoud Fadakar, Eva Verena Bärmann, Somayeh Namroodi, Olyagholi Khalilipour, Hamid Reza Rezaei

Golden jackal (Canis aureus) is one of the most common canid in Iran and can be found in habitats from Southeast Asia to Europe. Its rapid range expansion into Europe is indicated by the single haplotype (H1) of the mtDNA control region. H1 is the pioneer haplotype that expanded its range to Europe. Haplotypes from Turkey to Europe (western dispersal) and India (eastern dispersal) were identified before, while Iranian haplotypes are not known. Here, we completed its haplotype distribution from India to Europe by collecting samples from Iran. Results show that H1 is the most frequent Iranian haplotype compared to the five other haplotypes, and its most eastern distribution is in northeastern Iran. The phylogenetic tree and median-joining network indicate that all haplotypes are monophyletic, but Indian and Eurasian haplotypes are almost exclusive. We considered Oriental (Indian haplotypes + H13 from southeastern Iran) and Palearctic (others) haplogroups to explain haplotype distribution based on a median-joining network. The Oriental haplogroup is probably adapted to India towards southeastern Iran, while the Palearctic haplogroup is responsible for the current range expansion from Iran to Europe. The distribution and frequency of haplotypes indicate the rapid large-scale expansion, and unique haplotypes for specific geographic regions might be related to local adaptation.

金豺(Canis aureus)是伊朗最常见的犬科动物之一,栖息地从东南亚到欧洲都有分布。mtDNA 控制区的单一单倍型 (H1) 表明它的分布范围迅速扩展到了欧洲。H1 是将其分布范围扩展到欧洲的先驱单倍型。以前曾发现过从土耳其向欧洲(西部扩散)和印度(东部扩散)扩散的单倍型,而伊朗的单倍型尚不清楚。在此,我们通过采集伊朗的样本,完成了从印度到欧洲的单倍型分布。结果表明,与其他五个单倍型相比,H1 是伊朗最常见的单倍型,其最东部分布在伊朗东北部。系统发生树和中位连接网络表明,所有单倍型都是单系的,但印度和欧亚单倍型几乎是排他的。我们考虑了东方(印度单倍型+伊朗东南部的 H13)和古北(其他)单倍群,以中位连接网络为基础解释单倍型的分布。东方单倍群可能适应于印度向伊朗东南部的迁移,而古北单倍群则负责目前从伊朗向欧洲的范围扩展。单倍型的分布和频率表明了大规模扩张的迅速,而特定地理区域的独特单倍型可能与当地的适应性有关。
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引用次数: 0
The beneficial role of plant secondary compounds in giant panda foraging ecology 植物次生化合物在大熊猫觅食生态学中的有益作用
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-01-05 DOI: 10.1007/s42991-023-00386-z
Fei Yang, Ronald R. Swaisgood, Yuan Liu, Tingting Fang, Yi Dai, Megan A. Owen, Zejun Zhang, Le Wang, Shibin Yuan

Forage selection by mammalian herbivores has shown to be influenced by plant nutritional content, but the role of plant secondary compounds (PSCs) on forage selection is less well understood. Here, we studied the role of PSCs in giant panda (Ailuropoda melanoleuca) foraging strategies; examined seasonal and age class variation in PSC composition in the panda’s principal food resource, bamboo (Bashania fargesii); evaluated anti-oxidant and antibacterial effects of bamboo extract; and determined how panda’s seasonal movements and foraging patch selection which were determined by GPS collars related to patterns of PSC concentrations in bamboo. Panda’s selection of foraging sites indicated positive selection for several PSCs, including flavonoids, alkaloids, and tannins. Pandas primarily ingested bamboo leaves, as opposed other parts of the bamboo, during the time of year when many PSC concentrations were at their highest. Further, pandas prefer to forage on younger bamboo, which contains higher concentrations of alkaloids and antibacterial activity than older bamboo. As might be expected for compounds that can have positive or negative biological effects depending on dose, pandas appeared to select both for and against some PSCs depending on context. Ex situ experiments showed that flavonoids and alkaloids were influential antioxidants and tannins and alkaloids had high levels of antibacterial activity. Panda foraging sites were characterized by high anti-oxidant activity. Variation in PSC content of bamboo on the landscape may have profound effects on pandas, including parasite control, protecting against cancer, improved cardiovascular health, and disease prevention. These potential roles of PSCs should receive greater attention in ecology and conservation.

哺乳类食草动物的草料选择受植物营养成分的影响,但植物次生化合物(PSCs)对草料选择的作用却不甚了解。在这里,我们研究了植物次生化合物在大熊猫(Ailuropoda melanoleuca)觅食策略中的作用;考察了大熊猫的主要食物资源竹子(Bashania fargesii)中植物次生化合物组成的季节性和年龄级变化;评估了竹子提取物的抗氧化和抗菌作用;并确定了由全球定位系统项圈确定的大熊猫的季节性移动和觅食区选择与竹子中植物次生化合物浓度模式的关系。大熊猫对觅食地点的选择表明,它们对黄酮类、生物碱和单宁酸等几种PSCs具有积极的选择作用。大熊猫主要摄取竹叶,而不是竹子的其他部分,因为在一年中,竹叶中的许多PSC浓度都是最高的。此外,大熊猫喜欢觅食较嫩的竹子,因为较嫩竹子的生物碱浓度和抗菌活性高于较老的竹子。正如人们所预料的那样,对于根据剂量可产生积极或消极生物效应的化合物,大熊猫似乎会根据具体情况选择某些 PSCs。原位实验表明,黄酮类和生物碱是有影响力的抗氧化剂,而单宁酸和生物碱则具有较高的抗菌活性。熊猫觅食地的特点是抗氧化活性高。竹子景观中PSC含量的变化可能会对大熊猫产生深远影响,包括控制寄生虫、防止癌症、改善心血管健康和预防疾病。PSCs的这些潜在作用应该在生态学和自然保护中得到更多关注。
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引用次数: 0
Foramen ovale as a new determinative sign for the identification of tiger (Panthera tigris) and lion (Panthera leo) skulls 卵圆孔是鉴定虎(Panthera tigris)和狮(Panthera leo)头骨的新决定性标志
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-01-05 DOI: 10.1007/s42991-023-00388-x

Abstract

Tiger and lion bones are valued highly on the wildlife black market. The skeletons of the two species are very similar, but the level of protection and the laws applicable to them differ. When detecting crime in the field, it can be crucial to recognize the skeletons of these two species by their morphological features. A distinguishing feature neglected in practice is the foramen ovale at the base of the skull. A total of 112 skulls were evaluated (55 tigers and 57 lions). The orientation and appearance of the foramina ovalia were analyzed on skull photographs. Significant differences were found between tigers and lions. In lions, the foramina ovalia faced laterally and their outlets were usually at least partially hidden behind the straight edge of the os basisphenoidale from the ventral view of the skull. In most adult tigers, the foramina ovalia faced more rostrally with their outlets visible and bounded by a semi-circular edge of the os basisphenoidale. However, tiger skulls exhibited higher variability in foramina ovalia orientation than lion skulls. Like other identifying features on tiger and lion skulls, the foramen ovale was unable to distinguish all skulls with 100% confidence. Nevertheless, knowledge of this structure can help considerably in species identification.

摘要 虎骨和狮骨在野生动物黑市上价值不菲。这两个物种的骨骼非常相似,但适用的保护级别和法律却不同。在野外侦查犯罪时,通过形态特征识别这两个物种的骨骼至关重要。在实践中被忽视的一个识别特征是头骨底部的卵圆孔。我们共评估了 112 个头骨(55 个老虎头骨和 57 个狮子头骨)。通过头骨照片分析了卵圆孔的方向和外观。发现老虎和狮子之间存在显著差异。狮子的卵圆孔朝向侧面,从头骨的腹面看,其出口通常至少有一部分隐藏在基底蝶骨直边的后面。在大多数成年虎的头骨中,卵圆孔朝向喙侧,其出口清晰可见,并以脑基底的半圆形边缘为界。不过,与狮子头骨相比,老虎头骨中卵圆孔朝向的变化更大。与老虎和狮子头骨上的其他识别特征一样,卵圆孔也无法以 100% 的可信度区分所有头骨。不过,了解这一结构对物种鉴定有很大帮助。
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引用次数: 0
Female hormonal profiles and vaginal cytology in a ground squirrel species with prolonged hibernation 一种长期冬眠的地松鼠的雌性荷尔蒙特征和阴道细胞学特征
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2023-12-21 DOI: 10.1007/s42991-023-00387-y
N.A. Vasilieva, N. Tikhonova, L. Savinetskaya, Ekaterina V. Kuznetsova
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引用次数: 0
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