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Habitat connectivity of threatened ungulate species in a native savanna landscape of northern South America 南美洲北部原生稀树草原景观中受威胁蹄类动物的栖息地连通性
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-04-22 DOI: 10.1007/s42991-024-00404-8
Federico Mosquera-Guerra, Sebastián Barreto, Nathalia Moreno-Niño, Tania Marisol González-Delgado, Dolors Armenteras-Pascual

The native savanna ecosystem of the Orinoquia region is the habitat of 50% of the wild ungulate species reported for Colombia. Over the last 20 years, this high species diversity has been strongly threatened by the human transformation of the natural land cover causing connectivity loss of the habitats. The Orinoquia region lacks a biological connectivity analysis with a multi-species approach involving species groups that are representative of the savanna ecosystem such as the ungulates. Understanding the spatial distributions of suitable areas and the main habitats that act as primary habitats for ungulate species in these landscapes is fundamental for the design of conservation strategies. We use an occurrence dataset for lowland tapir (Tapirus terrestris), white-tailed deer (Odocoileus virginianus), and white-lipped peccary (Tayassu pecari) in the development of species’ potential distribution models, binarization process, and morphological spatial pattern analysis. This information was used for the modeling of dispersal corridors connecting the core habitats of the ungulate focal species using the randomized shortest path algorithm and quantifying the weighted global connectivity metrics. Our results suggest an integral corridor with potential least-cost dispersal routes between the native savanna landscape on the middle basins of the savanna rivers and the Meta River. These areas associated with the fluvial dendritic systems are connected, while the core habitats in the eastern part of the savanna landscape are disconnected. We discuss how the application of such knowledge on the spatial ecology of ungulate focal species might improve the management of the metapopulations in the Orinoquia region.

据报道,哥伦比亚有 50%的野生蹄类动物栖息在奥里诺基亚地区的原生稀树草原生态系统中。在过去的 20 年里,由于人类对自然土地覆盖的改造导致栖息地连通性的丧失,这种高度的物种多样性受到了严重威胁。奥里诺基亚地区缺乏以多物种方法进行的生物连通性分析,该方法涉及的物种群在热带稀树草原生态系统中具有代表性,例如有蹄类动物。了解适宜区域的空间分布以及在这些地貌中作为有蹄类动物主要栖息地的主要栖息地,对于制定保护战略至关重要。我们利用低地貘(Tapirus terrestris)、白尾鹿(Odocoileus virginianus)和白唇山雀(Tayassu pecari)的出没数据集开发物种潜在分布模型、二值化过程和形态空间模式分析。利用这些信息,我们采用随机最短路径算法建立了连接有蹄类重点物种核心栖息地的扩散走廊模型,并量化了加权全球连通性指标。我们的研究结果表明,在热带稀树草原河流中游流域的原生热带稀树草原景观与梅塔河之间,有一条完整的走廊,具有潜在的最低成本扩散路线。这些与河流树枝状系统相关的区域是相连的,而热带稀树草原景观东部的核心栖息地则是断开的。我们将讨论如何应用这些关于麋鹿重点物种空间生态学的知识来改善奥里诺基亚地区元种群的管理。
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引用次数: 0
Assessment of reproduction of brown bears in Sweden using stained placental scars 利用染色胎盘疤痕评估瑞典棕熊的繁殖情况
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-04-17 DOI: 10.1007/s42991-024-00413-7
Eva M. Schöll, Lisa A. Klestil, Andreas Zedrosser, Jon E. Swenson, Klaus Hackländer

The Swedish brown bear Ursus arctos population is protected, but managed with legally defined hunting seasons. Management decisions (e.g., hunting quotas) are frequently changed and should be based on knowledge about demographic parameters, but collecting sufficient data in the field is time consuming and expensive. An efficient method to collect data on reproductive output could be counting placental scars in the uteri of female brown bears, because hunters in Sweden are required to collect samples (including reproductive organs) of harvested bears and submit them to the authorities. We assessed the reliability of placental scar counts to determine reproductive performance by counting the number of young with female radio-collared brown bears and comparing that with placental scar counts after those females had been harvested. We found that staining uteri improved the detection of placental scars. The differences between number of scars detected before and after staining the uteri, increased significantly with female age. The number of placental scars and number of observed cubs-of-the-year accompanying females corresponded well 2 and 3 years after birth; relatively small deviations between them might have occurred because of early cub mortality prior to the observations after leaving the den. Placental scar counts can provide accurate information on age of primiparity, evidence for reproductive aging (senescence), and reproductive productivity, and therefore inform decisions regarding adaptive management, sustainable hunting, and conservation.

瑞典棕熊种群受到保护,但其管理有法律规定的狩猎季节。管理决策(如狩猎配额)经常改变,应基于对人口参数的了解,但在野外收集足够的数据既耗时又昂贵。统计雌性棕熊子宫内的胎盘疤痕可能是收集繁殖产出数据的有效方法,因为瑞典的猎人必须收集被猎熊的样本(包括生殖器官)并提交给当局。我们通过计算带无线电耳环的雌性棕熊的幼崽数量,并与这些雌性棕熊被猎杀后的胎盘疤痕数量进行比较,评估了胎盘疤痕计数在确定繁殖性能方面的可靠性。我们发现,对子宫染色可提高胎盘疤痕的检测率。子宫染色前后检测到的疤痕数量差异随着雌熊年龄的增长而显著增大。胎盘疤痕的数量和观察到的雌性当年幼崽的数量在出生后 2 年和 3 年间非常吻合;两者之间的偏差相对较小,这可能是由于幼崽在离开巢穴后进行观察之前的早期死亡造成的。胎盘疤痕计数可以提供有关初产年龄、生殖衰老(衰老)证据和生殖生产力的准确信息,从而为适应性管理、可持续狩猎和保护提供决策依据。
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引用次数: 0
Ultrasonic alarm call of Mongolian gerbils (Meriones ungiuculatus) in the wild and in captivity: a potential tool for detecting inhabited colonies during population depression 野生和人工饲养的蒙古沙鼠(Meriones ungiuculatus)的超声波报警叫声:在种群衰退期检测居住群落的潜在工具
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-04-17 DOI: 10.1007/s42991-024-00416-4
Ilya A. Volodin, Anna V. Klenova, Vadim E. Kirilyuk, Olga G. Ilchenko, Elena V. Volodina

In this study, we describe the acoustic structure of ultrasonic alarm calls of Mongolian gerbils Meriones unguiculatus in the wild and verify these calls as belonging to Mongolian gerbils by comparison of their acoustic parameters with alarm calls recorded in captivity. Both in captivity and in the wild, the alarm calls of Mongolian gerbils represented prolonged calls with an average duration of 118 ms and a flat contour and an average maximum fundamental frequency of 26.84 kHz. We found that alarm calls of captive Mongolian gerbils were shorter and higher in fundamental frequency and followed in a quicker succession than in the wild. Although the dataset size is not sufficient to determine significant acoustic variation between the populations, we discuss the potential reasons of the acoustic differences between the ultrasonic alarm calls produced in the wild and in captivity in our study and between the alarm calls reported in literature for different captive populations. We propose a method for non-invasive estimation of occupancy of the burrows by Mongolian gerbils in fragmented colonies at very low population density, by presence of the ultrasonic alarm calls.

在这项研究中,我们描述了野外蒙古沙鼠(Meriones unguiculatus)超声波报警声的声学结构,并通过将其声学参数与人工饲养条件下记录的报警声进行比较,验证了这些报警声属于蒙古沙鼠。无论是人工饲养还是野外,蒙古沙鼠的报警声都表现为平均持续时间为118毫秒的长鸣,轮廓平坦,平均最大基频为26.84千赫。我们发现,人工饲养的蒙古沙鼠的报警声比野外的更短,基频更高,而且连续的速度更快。虽然数据集的规模不足以确定种群之间存在显著的声学差异,但我们讨论了我们的研究中野外和圈养中产生的超声波报警声之间以及文献报道的不同圈养种群报警声之间存在声学差异的潜在原因。我们提出了一种在种群密度极低的零散群落中,通过超声波报警声的存在,对蒙古沙鼠占据洞穴的情况进行非侵入式估计的方法。
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引用次数: 0
Face to face: human recognition of Asian elephant facial features 面对面:人类对亚洲象面部特征的识别
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-04-11 DOI: 10.1007/s42991-024-00415-5
Christian Schiffmann, Linda Schiffmann, Petra Prager, Jennifer Pastorini, Marcus Clauss, Daryl Codron

Especially in species with complex social systems, the relatedness between individuals is important information. Visual phenotypic cues present one way to identify closely related conspecifics. Humans are capable of recognizing such visual cues in the faces of their own as well as several primate species, but to which degree this applies to non-primate species is largely unexplored. Here we demonstrate the capability of 110 test persons to recognize faces of 47 male Asian elephants based on 186 photographs. The human examiners were not only able to recognize an individual based on its face after several years, but also to identify, at decreasing accuracy, full brother pairs and paternal kinship. People regularly working with elephants were more successful than laypersons. However, even laypersons recognized 73.3% of the same individuals. The identification of individual elephants by a look at their faces presents a simple approach which can be a valuable tool for in situ research.

特别是在具有复杂社会系统的物种中,个体之间的亲缘关系是重要的信息。视觉表型线索是识别亲缘关系密切的同类的一种方法。人类有能力识别同类和几种灵长类动物面部的视觉线索,但这种能力在多大程度上适用于非灵长类动物,这一点在很大程度上尚未得到研究。在这里,我们展示了 110 名测试者根据 186 张照片识别 47 头亚洲象的能力。经过数年后,人类测试者不仅能够根据大象的面孔识别出其个体,而且还能识别出完整的兄弟配对和父系亲属关系,但准确率依次降低。经常与大象打交道的人比普通人更容易成功。不过,即使是普通人也能识别出 73.3% 的相同个体。通过观察脸部来识别大象个体是一种简单的方法,可以作为现场研究的宝贵工具。
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引用次数: 0
Is promiscuity the key? Multiple paternity in the garden dormouse (Eliomys quercinus) 滥交是关键吗?花园睡鼠(Eliomys quercinus)的多重父子关系
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-04-10 DOI: 10.1007/s42991-024-00414-6
Stefanie Erhardt, Marc I. Förschler, Joanna Fietz

Many mammals have a promiscuous mating system with multiple sired litters. Promiscuity can increase the genetic variability, reduce the risk of inbreeding, and increase the effective population size, and is therefore crucial for preventing genetic loss and maintaining adaptability. This is particularly true for small and threatened populations. The garden dormouse (Eliomys quercinus) is a threatened species, which exhibited a drastic decline over the last 20–30 years. The aim of this study was therefore to investigate the mating system of the garden dormouse in mountain forest habitat by parentage analyses using 5 polymorphic microsatellite markers combined with morphometric data and information about the nesting behavior. Genetic parentage analyses revealed that 64% (9 of 14) of the litters were sired by at least two males, suggesting that garden dormice have a promiscuous mating system. The genetic findings were further supported by indirect indicators of promiscuity, such as testes, that were nearly four times larger than predicted for a rodent of its body mass and only slight male biased sexual size dimorphism. The finding of a promiscuous mating system in garden dormice should be taken into account in future conservation efforts. Due to its habitat preferences and limited dispersal potential garden dormice are vulnerable to forest fragmentation. The connection of suitable habitats facilitates dispersal and promotes access to potential mating partners, which could be especially important for populations colonizing new habitats. Access to potential mates may also reduce inbreeding, loss of genetic variability which is crucial for populations viability and survival.

许多哺乳动物都有多胎交配的杂交系统。杂交可以增加基因变异性,降低近亲繁殖的风险,增加有效种群数量,因此对防止基因丢失和保持适应性至关重要。这对于小型和受威胁的种群来说尤其如此。花园睡鼠(Eliomys quercinus)是一种濒危物种,在过去的二三十年中数量急剧下降。因此,本研究的目的是利用 5 个多态性微卫星标记进行亲子分析,结合形态计量学数据和筑巢行为信息,研究山林栖息地花园睡鼠的交配系统。亲子遗传分析表明,64%的幼鼠(14只中的9只)至少由两只雄鼠所生,这表明花园睡鼠具有杂交系统。滥交的间接指标(如睾丸)进一步支持了遗传学的研究结果,睾丸比同类啮齿动物的预计体型大近四倍,而且只有轻微的雄性偏向性大小二态性。在未来的保护工作中,应考虑到花园睡鼠的滥交系统这一发现。由于对栖息地的偏好和有限的扩散潜力,花园睡鼠很容易受到森林破碎化的影响。将合适的栖息地连接起来有利于扩散,并促进与潜在交配对象的接触,这对新栖息地的种群来说尤为重要。接触潜在的交配对象还可以减少近亲繁殖,减少遗传变异的损失,而遗传变异对种群的生存能力和存活至关重要。
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引用次数: 0
Between the east and the west: genetic uniqueness of the Central-Asian wild boar (Sus scrofa) on the basis of maternal and paternal markers 东西方之间:基于母系和父系标记的中亚野猪遗传独特性
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-04-05 DOI: 10.1007/s42991-024-00411-9
Nikolay I. Markov, Elena A. Bykova, Alexander V. Esipov, Sabir T. Nurtazin, Maryana N. Ranyuk, Vera A. Matrosova

The widespread occurrence of the wild boar Sus scrofa, its controversial role in natural communities, and its close relationship with humans make this animal an important and convenient subject for studying the history and evolution of natural communities. The territory of Central Asia has been poorly represented in mammalian phylogeographic studies, namely in the case of wild boars and domestic pigs. In this study, we provide new information on wild boar genetic diversity in Central Asia in terms of mitochondrial and Y-chromosome markers and compare the set of haplotypes observed in Uzbekistan and Kazakhstan with those from other parts of the species’ range. The wild boar population in Central Asia is characterized by high uniqueness of mitochondrial and Y-chromosome markers and high haplotype diversity (as compared to other Asian regions). A maternal lineage marker (mitochondrial-DNA control region) clearly places this species in the Asian clade, whereas a paternal lineage markers (AMELY + USP9) positions it closer to wild boars from the western clade. Thus, the molecular genetic data supported the existence of a regionally specific subspecies of the wild boar: S. s. nigripes Blanford, 1875. Median-joining network analysis showed that Central Asia may be a center of dispersal and formation of S. scrofa genetic lineages in North Asia.

野猪(Sus scrofa)的广泛分布、它在自然群落中颇具争议的角色以及它与人类的密切关系,使这种动物成为研究自然群落历史和演变的一个重要而便捷的课题。在哺乳动物系统地理学研究中,中亚地区的野猪和家猪的研究很少。在这项研究中,我们从线粒体和 Y 染色体标记的角度提供了中亚野猪遗传多样性的新信息,并将在乌兹别克斯坦和哈萨克斯坦观察到的单倍型与该物种分布区其他地方的单倍型进行了比较。中亚野猪种群的特点是线粒体和 Y 染色体标记的独特性高,单倍型多样性高(与亚洲其他地区相比)。母系标记(线粒体 DNA 控制区)明确将该物种归入亚洲支系,而父系标记(AMELY + USP9)则将其定位为更接近西方支系的野猪。因此,分子遗传数据支持了野猪地区亚种的存在:S. s. nigripes Blanford, 1875。中位连接网络分析显示,中亚可能是北亚野猪遗传系的扩散和形成中心。
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引用次数: 0
Spatial distribution of environmental suitability for the maned wolf in central Argentina 阿根廷中部鬃狼环境适宜性的空间分布
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-03-29 DOI: 10.1007/s42991-024-00407-5
Andrés Ulibarrie, Marcela Orozco, Andrés Pautasso, Maximiliano A Cristaldi
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引用次数: 0
Insular dwarfism in horses from the Aegean Sea and the Japanese archipelago 爱琴海和日本列岛马匹的岛屿侏儒症
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-03-29 DOI: 10.1007/s42991-024-00408-4
Keesha M. Ming, Kévin Le Verger, Madeleine Geiger, T. Schmelzle, Georgios L. Georgalis, Genya Shimbo, Motoki Sasaki, Satoshi D. Ohdachi, M. Sánchez-Villagra
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引用次数: 0
Could the detection of small rodents be improved? The case of Oligoryzomys flavescens, an orthohantavirus reservoir species, in a natural reserve immersed in an urban landscape 能否改进对小型啮齿动物的检测?在城市景观中的自然保护区中发现的正杭病毒库物种 Oligoryzomys flavescens 的案例
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-03-28 DOI: 10.1007/s42991-024-00409-3
Alejandra L. Pérez, Olga V. Suárez, Mariel A. Tripodi, Diego Hancke, Emiliano Muschetto

Detectability poses a common challenge faced by studies of small mammals. Traditional sampling methods use traps placed exclusively on the ground, which makes them less effective for monitoring species with climbing habits. The bias arising from imperfect detection may have important implications in pest assessment, epidemiological studies involving reservoirs, and conservation studies. In this study, we added above ground level (AGL) traps in the bushy or arboreal stratum to the conventional sampling protocol. Our objective was to evaluate whether the location of the traps influences the seasonal abundance pattern of Oligoryzomys flavescens, a scansorial rodent species identified as an orthohantavirus reservoir in the study area. Additionally, we evaluated the potential impact of various environmental variables on the capture probability of O. flavescens in different strata. Detectability of this rodent was significantly increased in traps placed AGL than at ground level (GL). However, trap placement level did not influence seasonal variation in O. flavescens abundance. Furthermore, the increase in herbaceous cover at ground level positively influenced the probability of capturing O. flavescens in traps placed AGL. Traditional sampling designs relying solely on GL traps may perform well for studies focused on the population dynamics of O. flavescens. Conversely, in areas where herbaceous vegetation facilitates connectivity between the ground and shrub layers, adding AGL traps in the sampling strategy can guarantee better results for studies that need to capture a large number of O. flavescens individuals (i.e., seroprevalence studies or investigations on movements).

可探测性是小型哺乳动物研究面临的共同挑战。传统的取样方法只使用放置在地面上的诱捕器,这使得它们对于监测有攀爬习性的物种不太有效。不完全探测所产生的偏差可能会对害虫评估、涉及水库的流行病学研究和保护研究产生重要影响。在本研究中,我们在传统采样方案的基础上增加了灌木丛或树栖层的地面以上水平(AGL)诱捕器。我们的目的是评估诱捕器的位置是否会影响Oligoryzomys flavescens的季节性丰度模式,Oligoryzomys flavescens是一种鳞翅目啮齿类动物,被确定为研究区域的正黄病毒库。此外,我们还评估了各种环境变量对不同地层捕获 O. flavescens 概率的潜在影响。与地面水平(GL)相比,在 AGL 水平放置的诱捕器中,这种啮齿动物的可探测性明显增加。然而,诱捕器的放置水平并不影响 O. flavescens 数量的季节性变化。此外,地面草本植物覆盖率的增加对在 AGL 放置的诱捕器中捕获 O. flavescens 的概率有积极影响。传统的取样设计完全依赖于GL诱捕器,这对于关注O. flavescens种群动态的研究可能会有很好的效果。相反,在草本植被有助于地面层和灌木层之间的连接的地区,在采样策略中加入 AGL 诱捕器可以保证需要捕获大量 O. flavescens 个体的研究(即血清流行率研究或移动调查)取得更好的结果。
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引用次数: 0
Odour preferred males led to a higher offspring number in the common vole 喜欢气味的雄性会使普通田鼠的后代数量增加
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2024-03-26 DOI: 10.1007/s42991-024-00406-6
Pavlína Bílková, Jakub Vlček, Tijana Cvetković, Jan Štefka, František Sedláček

Very recently, an interesting phenomenon was described in the common vole; vole parents with similar locomotor ability produced significantly larger litters. Positive assortative mating is a tendency to prefer individuals with similar phenotypes. We tested whether this also applies to smell similarity. Odour preference was tested in a T-maze, where each female was presented with two male odours, i.e. shavings together with feces and urine from home boxes. After female preference was established, the female was either paired with a preferred male (chosen) or paired with a non-preferred male (opposite choice). For analysis of the relationship to odour preference, genotyping of major histocompatibility complex (MHC) Class II DRB was done using amplicon sequencing. In the set of 45 individuals from two populations, we recovered 38 nucleotide haplotypes (alleles). Similarity of alleles in parent pairs according to the indexes of Sørensen–Dice (S–D) and Jaccard were calculated. Values of these indexes in parental pairs with preferred males were significantly higher (more similar) than in not preferred. The number of offspring in parental pairs with preferred males were significantly higher than in not preferred males. However, there is no correlation between the mentioned indexes and the number of offspring. The relationship between the success of reproduction and alleles is not clear-cut, this may be influenced by the measure of similarity we used, or by something that we could not detect.

最近,人们在普通田鼠身上发现了一个有趣的现象:具有相似运动能力的田鼠亲本产下的仔鼠个头明显更大。阳性同类交配是一种偏好表型相似个体的倾向。我们测试了这是否也适用于气味相似性。我们在 T 型迷宫中测试了气味偏好,每只雌鼠都会闻到两种雄鼠的气味,即刨花、粪便和尿液。在确定雌鼠的偏好后,雌鼠要么与偏好的雄鼠配对(选择),要么与非偏好的雄鼠配对(相反选择)。为了分析与气味偏好的关系,使用扩增子测序法对主要组织相容性复合体(MHC)II类DRB进行了基因分型。在来自两个种群的 45 个个体中,我们发现了 38 个核苷酸单倍型(等位基因)。根据索伦森-戴斯(S-D)和雅卡德(Jaccard)指数计算了亲本配对中等位基因的相似性。有偏好雄性的亲本配对的这些指数值明显高于无偏好雄性的亲本配对(更相似)。有偏好雄性的亲本配对的后代数量明显高于没有偏好雄性的亲本配对。然而,上述指数与后代数量之间没有相关性。繁殖成功率与等位基因之间的关系并不明确,这可能是受我们所使用的相似性测量方法的影响,也可能是我们无法检测到的原因。
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引用次数: 0
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Mammalian Biology
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