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An integrated abundance model for estimating county-level prevalence of opioid misuse in Ohio. 用于估算俄亥俄州县级阿片类药物滥用流行率的综合丰度模型。
IF 2 3区 数学 Q1 Social Sciences Pub Date : 2023-01-01 Epub Date: 2023-01-31 DOI: 10.1093/jrsssa/qnac013
Staci A Hepler, David M Kline, Andrea Bonny, Erin McKnight, Lance A Waller

Opioid misuse is a national epidemic and a significant drug related threat to the United States. While the scale of the problem is undeniable, estimates of the local prevalence of opioid misuse are lacking, despite their importance to policy-making and resource allocation. This is due, in part, to the challenge of directly measuring opioid misuse at a local level. In this paper, we develop a Bayesian hierarchical spatio-temporal abundance model that integrates indirect county-level data on opioid-related outcomes with state-level survey estimates on prevalence of opioid misuse to estimate the latent county-level prevalence and counts of people who misuse opioids. A simulation study shows that our integrated model accurately recovers the latent counts and prevalence. We apply our model to county-level surveillance data on opioid overdose deaths and treatment admissions from the state of Ohio. Our proposed framework can be applied to other applications of small area estimation for hard to reach populations, which is a common occurrence with many health conditions such as those related to illicit behaviors.

阿片类药物滥用是一种全国性流行病,也是美国面临的一个重大毒品威胁。尽管问题的严重性毋庸置疑,但对当地阿片类药物滥用流行率的估计却很缺乏,尽管这对政策制定和资源分配非常重要。这部分是由于在地方一级直接测量阿片类药物滥用所面临的挑战。在本文中,我们建立了一个贝叶斯分层时空丰度模型,该模型整合了县级阿片类药物相关结果的间接数据和州级阿片类药物滥用流行率的调查估计值,以估计县级滥用阿片类药物者的潜在流行率和人数。模拟研究表明,我们的综合模型能够准确地恢复潜在的人数和流行率。我们将模型应用于俄亥俄州阿片类药物过量死亡和入院治疗的县级监测数据。我们提出的框架可应用于对难以接触到的人群进行小范围估算的其他应用中,这在许多健康状况(如与非法行为相关的健康状况)中都很常见。
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引用次数: 0
Contents of volume 185, 2022 第185卷内容,2022年
IF 2 3区 数学 Q1 Social Sciences Pub Date : 2022-12-30 DOI: 10.1111/rssa.12994
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引用次数: 0
Proposal of the vote of thanks for ‘Statistics in times of increasing uncertainty’, Sylvia Richardson's Presidential Address 西尔维娅·理查森主席致辞:“不确定性增加时期的统计数据”
IF 2 3区 数学 Q1 Social Sciences Pub Date : 2022-12-26 DOI: 10.1111/rssa.12989
Deborah Ashby

I would like to thank Sylvia for a wonderful Presidential Address tonight. It feels like a different world from my own Presidential address delivered in the first year of my presidency in June 2019. In it, I concluded that the RSS for nearly 200 years has at its heart been about using data for the public good, while developing the statistical science and building the statistical capacity required to do that. My Presidential predecessors had identified many challenges that are still with us. In addition, I opined that we faced important new challenges. These include providing health and social care for people with increasing levels of multimorbidity, coupled with the pensions' crisis as people are living longer lives and also the effects of climate change as two areas where statisticians can make contributions. Those challenges have not gone away but, as Sylvia so eloquently describes, we had no idea of the scale of new challenge that was about to hit us.

Just over 6 months later, the world changed beyond recognition with the advent of SARS-CoV-2. Statisticians, along with many others, tried to get to grips and contribute to a huge range of issues in timelines and in a context that is unprecedented. As President, I was hugely grateful to Sylvia and David Spiegelhalter for agreeing to co-chair the RSS's Covid-19 Task Force, which co-ordinated the Society's response, as well as the group undertaking fearsome amounts of work themselves. Sylvia's magisterial Presidential address documents and reflects on the extraordinary work done under their leadership.

Building on some of Sylvia's themes, I would like to make some personal reflections on how the scientific community, including statisticians, achieved such a lot in such a short time, and to me, the key is a firm grounding of principles and preparedness, coupled with flexibility and agility. Sylvia mentions the REACT studies, and to declare my interests, I was an investigator in those. The reason the team was able to mount those studies so well and so quickly was combination of prior experience in large population studies in other clinical areas, combined with a huge logistical exercise between academic, government and private partners, the scale of which I only now fully appreciate. The pace of data coming in, reports being drafted, headlines feeding into policy arenas, then full reports being put in the public domain within days was in complete contrast to the painstaking ways epidemiologists traditionally work, but gave rise to a huge sense of satisfaction. The Covid19 Task Force generously played a pivotal role at the development stage of the REACT protocols, giving helpful critical feedback to improve the study designs by return that would normally take months through the normal academic grant-giving process.

In my own presidential address, I had presciently flagged up adaptive platform trials, describing them as the evolution of the Rothamsted ‘long-term experiments’. Sylvi

我要感谢西尔维娅今晚精彩的总统演讲。这与我在2019年6月担任总统第一年发表的总统演讲感觉完全不同。在这篇文章中,我总结道,近200年来,RSS的核心一直是利用数据为公共利益服务,同时发展统计科学并建立这样做所需的统计能力。我的前任总统已经确定了许多仍然存在的挑战。此外,我认为我们面临重要的新挑战。其中包括为患有多种疾病的人提供健康和社会护理,再加上养老金危机,因为人们的寿命越来越长,以及气候变化的影响,这是统计学家可以做出贡献的两个领域。这些挑战并没有消失,但正如西尔维娅雄辩地描述的那样,我们不知道即将到来的新挑战的规模。仅仅6个多月后,随着SARS-CoV-2的出现,世界变得面目全非。统计学家和其他许多人一起,试图掌握并在前所未有的时间和背景下为一系列问题做出贡献。作为主席,我非常感谢西尔维娅和大卫·斯皮格霍尔特同意共同担任RSS Covid-19特别工作组的主席,该工作组负责协调协会的应对工作,同时也感谢该小组自己承担了大量的工作。西尔维娅的权威性总统讲话记录并反映了在他们领导下所做的非凡工作。基于西尔维娅的一些主题,我想对包括统计学家在内的科学界如何在如此短的时间内取得如此巨大的成就提出一些个人思考,对我来说,关键是原则和准备的坚实基础,以及灵活性和敏捷性。西尔维娅提到了REACT研究,声明一下我的兴趣,我是其中的一名研究者。这个团队之所以能够如此顺利、如此迅速地完成这些研究,是因为他们结合了之前在其他临床领域进行大规模人口研究的经验,再加上学术界、政府和私人合作伙伴之间的大量后勤工作,我现在才完全理解其中的规模。数据的输入,报告的起草,政策领域的头条新闻,然后在几天内将完整的报告放在公共领域,与流行病学家传统的艰苦工作方式形成鲜明对比,但却产生了巨大的满足感。covid - 19特别工作组在REACT协议的制定阶段慷慨地发挥了关键作用,通过反馈提供了有用的关键反馈,以改进研究设计,而正常的学术拨款过程通常需要几个月的时间。在我自己的总统演讲中,我很有先见之明地指出了适应性平台试验,将其描述为洛桑“长期实验”的演变。西尔维娅强调了康复试验,这是一个在住院患者中进行的平台试验,它对多种疗法给出了快速的答案,足以改善后续患者的护理。还有两项姊妹适应性试验,分别是针对重症监护患者的REMAP-CAP和针对社区人群的PRINCIPLE。我曾担任后者的数据监测委员会主席,定期为我提供了巨大的智力刺激,甚至在疫情最严重的时候每周都会开会。这些复杂的试验也在破纪录的时间内建立起来,这是可能的,因为在其他临床领域有丰富的经验,REMAP- cap建立在现有的重症监护患者REMAP研究的基础上,PRINCIPLE基本上是由负责ALICE的同一团队开发的,ALICE是大流行性流感的适应性平台试验。所有这些都汇集了科学设计、新颖的统计方法和克服可怕的后勤挑战,包括伦理和监管机构的快速追踪,以及使用新的招聘策略来改善Covid患者的结果。疫苗的惊人快速开发、试验和部署也是基于大流行之前广泛的科学和统计投资。西尔维娅的演讲对过去两年进行了深思熟虑和明智的反思,同时也展望未来,确保协会在应对其他主要的现有和新出现的挑战方面处于有利地位。对我们的社会至关重要的是,这些包括与数据科学的战略合作。正如她的总统演说所证明的那样,西尔维娅在不平凡的时代是一位不平凡的总统,我非常高兴地建议大家投上感谢的一票。
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引用次数: 0
Referees 裁判
IF 2 3区 数学 Q1 Social Sciences Pub Date : 2022-12-26 DOI: 10.1111/rssa.12969
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引用次数: 0
Discussion of Presidential address: Statistics in times of increasing uncertainty by Sylvia Richardson 讨论总统演说:不确定性增加时期的统计资料,作者:西尔维娅·理查森
IF 2 3区 数学 Q1 Social Sciences Pub Date : 2022-12-26 DOI: 10.1111/rssa.12970
David Spiegelhalter
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引用次数: 1
Contents of volume 185, 2022 第185卷内容,2022年
IF 2 3区 数学 Q1 Social Sciences Pub Date : 2022-12-26 DOI: 10.1111/rssa.12990
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引用次数: 0
Statistics in times of increasing uncertainty 不确定性增加时的统计
IF 2 3区 数学 Q1 Social Sciences Pub Date : 2022-12-26 DOI: 10.1111/rssa.12957
Sylvia Richardson

The statistical community mobilised vigorously from the start of the 2020 SARS-CoV-2 pandemic, following the RSS's long tradition of offering our expertise to help society tackle important issues that require evidence-based decisions. This address aims to capture the highlights of our collective engagement in the pandemic, and the difficulties faced in delivering statistical design and analysis at pace and in communicating to the wider public the many complex issues that arose. I argue that these challenges gave impetus to fruitful new directions in the merging of statistical principles with constraints of agility, responsiveness and societal responsibilities. The lessons learned from this will strengthen the long-term impact of the discipline and of the Society. The need to evaluate policies even in emergency, and to strive for statistical interoperability in future disease surveillance systems is highlighted. In my final remarks, I look towards the future landscape for statistics in the fast-moving world of data science and outline a strategy of visible and growing engagement of the RSS with the data science ecosystem, building on the central position of statistics.

从2020年SARS-CoV-2大流行开始,统计界就积极动员起来,遵循RSS提供专业知识帮助社会解决需要循证决策的重要问题的悠久传统。这次讲话的目的是强调我们集体参与这一流行病的重点,以及在及时提供统计设计和分析以及向更广泛的公众宣传所出现的许多复杂问题方面所面临的困难。我认为,这些挑战推动了将统计原则与敏捷性、响应性和社会责任约束相结合的富有成效的新方向。从中吸取的教训将加强该学科和该协会的长期影响。报告强调,即使在紧急情况下也需要评估政策,并努力在未来的疾病监测系统中实现统计互操作性。在我最后的发言中,我展望了在快速发展的数据科学世界中统计的未来前景,并概述了RSS在数据科学生态系统中日益明显的参与战略,以统计的中心地位为基础。
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引用次数: 2
Ian Reynold's discussion contribution to papers in Session 3 of the Royal Statistical Society's Special Topic Meeting on COVID-19 transmission: 11 June 2021 Ian reynolds在2021年6月11日皇家统计学会2019冠状病毒病传播专题会议第三次会议上对论文的讨论贡献
IF 2 3区 数学 Q1 Social Sciences Pub Date : 2022-12-23 DOI: 10.1111/rssa.12983
Ian Reynolds
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引用次数: 0
A COVID-19 model for local authorities of the United Kingdom 英国地方当局COVID-19模式
IF 2 3区 数学 Q1 Social Sciences Pub Date : 2022-12-13 DOI: 10.1111/rssa.12988
Swapnil Mishra, James A. Scott, Daniel J. Laydon, Harrison Zhu, Neil M. Ferguson, Samir Bhatt, Seth Flaxman, Axel Gandy

We propose a new framework to model the COVID-19 epidemic of the United Kingdom at the local authority level. The model fits within a general framework for semi-mechanistic Bayesian models of the epidemic based on renewal equations, with some important innovations, including a random walk modelling the reproduction number, incorporating information from different sources, including surveys to estimate the time-varying proportion of infections that lead to reported cases or deaths, and modelling the underlying infections as latent random variables. The model is designed to be updated daily using publicly available data. We envisage the model to be useful for now-casting and short-term projections of the epidemic as well as estimating historical trends. The model fits are available on a public website: https://imperialcollegelondon.github.io/covid19local. The model is currently being used by the Scottish government to inform their interventions.

我们提出了一个新的框架,在地方当局一级模拟英国的COVID-19流行病。该模型符合以更新方程为基础的流行病半机械贝叶斯模型的一般框架,其中有一些重要的创新,包括随机游走模拟再现数,纳入来自不同来源的信息,包括用于估计导致报告病例或死亡的随时间变化的感染比例的调查,以及将潜在感染建模为潜在随机变量。该模型被设计为每天使用公开可用的数据进行更新。我们设想该模型可用于流行病的现在预测和短期预测以及估计历史趋势。模型拟合可以在一个公共网站上找到:https://imperialcollegelondon.github.io/covid19local。该模型目前正被苏格兰政府用来为他们的干预提供信息。
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引用次数: 22
Gavin J. Gibson's invited discussion contribution to the papers in Session 2 of the Royal Statistical Society's Special Topic Meeting on Covid-19 Transmission: 11 June 2021 Gavin J. Gibson受邀在2021年6月11日皇家统计学会2019冠状病毒病传播专题会议第二届会议上对论文进行讨论
IF 2 3区 数学 Q1 Social Sciences Pub Date : 2022-12-13 DOI: 10.1111/rssa.12972
Gavin J. Gibson
I congratulate both teams for these welcome contributions on modelling the Covid-19 pandemic. To produce results of such quality within exacting timescales is a genuine achievement. Both studies infer a time-varying reproduction number R t from summary data by construct-ing hierarchical Bayesian frameworks embodying R t as an intrinsic parameter. Observations arise as noisy, time-shifted representations of an autoregressive infection process with weights specified by generation-time probabilities and moderated by R t . With a common root in Flaxman et al. (2020), the papers differ in their treatment of temporal effects and spatial cou-pling (with Teh et al. (2022) adopting an explicitly spatio-temporal Gaussian process for log R t while Mishra et al. (2022) use a random walk prior), in their use of data, and in underlying assumptions. Neither study, in the prior for R t , incorporates foreseeable effects such as step changes follow-ing interventions, the impact of improved testing on track-and-trace measures, or the expected decline in R t due to susceptible depletion. Incidentally, the presentation of the infection model in Mishra et al. (2022) seems confusing, with R t between equations (1) and (2) changing from an instantaneous reproduction number to a ‘raw’ reproduction number, subsequently re-scaled by the susceptible proportion before reporting. The papers’ general approach is arguably the ‘image analyst’s take’ on epidemic modelling, where the objective is to recover a ‘true’ R t from a noisy image, with prior distributions providing regularisation rather than capturing mechanistic thinking. This approach differs
我祝贺这两个团队在模拟Covid-19大流行方面做出的可喜贡献。在严格的时间尺度内产生如此高质量的结果是一项真正的成就。两项研究都通过构建层次贝叶斯框架,从汇总数据中推断出时变的再现数R t $$ {R}_t $$R t $$ {R}_t $$作为内在参数。观察结果是自回归感染过程的噪声时移表示,其权重由代时间概率指定,并由R t $$ {R}_t $$调节。与Flaxman等人(2020)的共同根源,这两篇论文在处理时间效应和空间耦合方面有所不同(Teh等人(2022)对log R t采用了明确的时空高斯过程$$ log {R}_t $$,而Mishra等人则采用了不同的方法。(2022)使用随机漫步先验),在数据的使用和潜在的假设中。在R t $$ {R}_t $$之前的研究中,这两项研究都没有纳入可预见的影响,例如干预后的阶跃变化,改进测试对跟踪和跟踪措施的影响,或R t $$ {R}_t $$由于易感耗竭的预期下降。顺便提一下,Mishra等人(2022)对感染模型的描述似乎令人困惑,方程(1)和(2)之间的R t $$ {R}_t $$从瞬时繁殖数变为“原始”繁殖数,随后由报告前的敏感比例重新缩放。论文的一般方法可以说是“图像分析师对流行病建模的看法”,其目标是从噪声图像中恢复“真实”的R t $$ {R}_t $$,先验分布提供正则化,而不是捕获机械思维。这种方法不同于植物或动物病原体建模者经常采用的方法,后者旨在估计控制传播过程不同方面的参数,例如接触率和空间核函数,然后将“机制”理解外推到其他环境。R t $$ {R}_t $$这个可以定义的量是传播过程和假定的监测和控制策略的副产品,而不是一个内在参数。 , 2019)?例如,当模拟具有繁殖矩阵R t $$ {mathbf{R}}_t $$的结构化种群的类似数据时,输入的R t $$ {R}_t $$能成功地跟踪真实R的最大特征值吗T $$ {mathbf{R}}_t $$,或者它可能低估了这个数量,因为组间的感染分布可能与相应的特征向量不匹配?与更简单的平滑方法进行比较也是受欢迎的。这两篇论文强调了流行病统计建模的一个重要挑战——对更复杂的机制模型的统计推断,这些模型可能为有针对性的控制策略的设计提供信息。这就要求可用数据的丰富程度与模型的复杂性更好地匹配;实现这样的匹配本身就是一个重大挑战。这些论文的作者有效地利用了现有数据,他们的建模是理解空间相互作用影响的重要一步。探索他们的框架是否延伸到其他异质性将是有趣的,例如年龄结构引起的异质性,其重要性在其他研究中已经得到强调(例如Lau等人,2020)。
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引用次数: 0
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Journal of the Royal Statistical Society Series A-Statistics in Society
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