Caio de Oliveira Gorgulho Silva, Nakul Abhay Bapat, Claire L Bourmaud, Cecilie Nørskov Jensen, Jean Behaghel de Bueren, Jeremy Luterbacher, Anne S Meyer, Gijs van Erven, Willem J H van Berkel, Mirjam A Kabel, Jane W Agger
Lignin is the largest renewable resource for aromatics, and the quest to understand enzymatic lignin modification has never been more important. A recently recognized group of single-domain type-3 copper enzymes, named ortho-methoxyphenolases (o-MPs, EC 1.14.18.13) and previously referred to as short polyphenol oxidases (PPOs), found in filamentous fungi can sequentially o-hydroxylate and oxidize guaiacyl-type phenols into methoxy-o-quinones. A subset of these enzymes also targets syringyl-type phenols and, via an unprecedented oxidative o-demethoxylation mechanism, funnels these into the same methoxy-o-quinones generated from guaiacyl-type compounds. Here, we demonstrate that fungal o-methoxyphenolases also cleave bonds in lignin model dimers representing the abundant β-O-4'-linked substructures of lignin, having guaiacyl and, in some cases, syringyl terminal phenolic groups. Based on advanced liquid chromatography-mass spectrometry (LC-MS), nuclear magnetic resonance (NMR) analysis, and isotope labeling, we propose a mechanism in which the enzymatic formation of methoxy-o-quinone moieties in the model dimers triggers intramolecular rearrangements that lead to different types of bond cleavage, where C1-Cα cleavage predominates. Additionally, β-ether breakage and formation of Cα-ketone groups occur. We investigate the influence of pH and reductants on reaction pathways and identify strategies to steer the reaction toward either depolymerization or oxyfunctionalization of the dimers without interunit bond cleavage. The enzymes also target Cα-oxidized model dimers, albeit at lower rates. The findings of this study demonstrate the potential of using fungal o-methoxyphenolases for catalyzing selective ortho-hydroxylation and two-electron oxidation of lignin components and provide a new foundation for developing enzyme-based lignin valorization strategies.
{"title":"Oxygenation and Oxidation of Lignin Model Dimers by Fungal <i>Ortho</i>-Methoxyphenolases.","authors":"Caio de Oliveira Gorgulho Silva, Nakul Abhay Bapat, Claire L Bourmaud, Cecilie Nørskov Jensen, Jean Behaghel de Bueren, Jeremy Luterbacher, Anne S Meyer, Gijs van Erven, Willem J H van Berkel, Mirjam A Kabel, Jane W Agger","doi":"10.1021/jacs.5c22901","DOIUrl":"https://doi.org/10.1021/jacs.5c22901","url":null,"abstract":"<p><p>Lignin is the largest renewable resource for aromatics, and the quest to understand enzymatic lignin modification has never been more important. A recently recognized group of single-domain type-3 copper enzymes, named <i>ortho</i>-methoxyphenolases (<i>o</i>-MPs, EC 1.14.18.13) and previously referred to as short polyphenol oxidases (PPOs), found in filamentous fungi can sequentially <i>o</i>-hydroxylate and oxidize guaiacyl-type phenols into methoxy-<i>o</i>-quinones. A subset of these enzymes also targets syringyl-type phenols and, via an unprecedented oxidative <i>o</i>-demethoxylation mechanism, funnels these into the same methoxy-<i>o</i>-quinones generated from guaiacyl-type compounds. Here, we demonstrate that fungal <i>o</i>-methoxyphenolases also cleave bonds in lignin model dimers representing the abundant β-O-4'-linked substructures of lignin, having guaiacyl and, in some cases, syringyl terminal phenolic groups. Based on advanced liquid chromatography-mass spectrometry (LC-MS), nuclear magnetic resonance (NMR) analysis, and isotope labeling, we propose a mechanism in which the enzymatic formation of methoxy-<i>o</i>-quinone moieties in the model dimers triggers intramolecular rearrangements that lead to different types of bond cleavage, where C1-Cα cleavage predominates. Additionally, β-ether breakage and formation of Cα-ketone groups occur. We investigate the influence of pH and reductants on reaction pathways and identify strategies to steer the reaction toward either depolymerization or oxyfunctionalization of the dimers without interunit bond cleavage. The enzymes also target Cα-oxidized model dimers, albeit at lower rates. The findings of this study demonstrate the potential of using fungal <i>o</i>-methoxyphenolases for catalyzing selective <i>ortho</i>-hydroxylation and two-electron oxidation of lignin components and provide a new foundation for developing enzyme-based lignin valorization strategies.</p>","PeriodicalId":49,"journal":{"name":"Journal of the American Chemical Society","volume":" ","pages":""},"PeriodicalIF":15.6,"publicationDate":"2026-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146117086","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Gabriele Melchiorre,Matteo Valentini,Francesco Ranieri,Davide Cantiello,Roberta Cacciapaglia,Laura Baldini,Gianfranco Ercolani,Stefano Di Stefano
The smooth decarboxylation under basic conditions of activated carboxylic acids (ACAs) is exploited to achieve a transient supramolecular polymer based on hydrogen bonds reinforced by electrostatic interactions. In particular, it is proved that when the aliphatic α,ω-diamine 3, namely, 1,8-diamino-3,6-dioxaoctane, reacts with an equimolar amount of the activated dicarboxylic acid 1H2, i.e., a difunctional derivative of 2-cyano-2-phenylpropanoic acid, a supramolecular polymer of the kind −AB─BA─AB– is immediately formed in chloroform solution. The A─A and B─B monomers are held together by salt bridges (hydrogen bonds reinforced by electrostatic interactions) between ammonium and carboxylate functions. The larger the concentration of the added materials, the higher the polymerization degree (DP) of the polymer. Under the given experimental protocol, such a polymer disaggregates over time due to decarboxylation, and at the end of the process, only diamine 3 and waste product 4, which cannot interact with one another anymore, remain in the solutions. DOSY spectra recorded at different reaction times definitely demonstrate the phenomenology described above. The trend of the degree of polymerization as a function of monomer concentration has been clarified in the light of the ring–chain equilibrium theory. The application of the theory enables the accurate evaluation of the distribution of linear and cyclic oligomers as well as the critical concentration, ccrit, above which polymerization rapidly becomes more extensive due to the saturation of macrocyclic species. Notably, the ACA is not used just as a stimulus for a dissipative system, but as one of its structural components.
{"title":"Transient Salt-Bridge-Based Supramolecular Polymers: Experiments and Theory","authors":"Gabriele Melchiorre,Matteo Valentini,Francesco Ranieri,Davide Cantiello,Roberta Cacciapaglia,Laura Baldini,Gianfranco Ercolani,Stefano Di Stefano","doi":"10.1021/jacs.5c22087","DOIUrl":"https://doi.org/10.1021/jacs.5c22087","url":null,"abstract":"The smooth decarboxylation under basic conditions of activated carboxylic acids (ACAs) is exploited to achieve a transient supramolecular polymer based on hydrogen bonds reinforced by electrostatic interactions. In particular, it is proved that when the aliphatic α,ω-diamine 3, namely, 1,8-diamino-3,6-dioxaoctane, reacts with an equimolar amount of the activated dicarboxylic acid 1H2, i.e., a difunctional derivative of 2-cyano-2-phenylpropanoic acid, a supramolecular polymer of the kind −AB─BA─AB– is immediately formed in chloroform solution. The A─A and B─B monomers are held together by salt bridges (hydrogen bonds reinforced by electrostatic interactions) between ammonium and carboxylate functions. The larger the concentration of the added materials, the higher the polymerization degree (DP) of the polymer. Under the given experimental protocol, such a polymer disaggregates over time due to decarboxylation, and at the end of the process, only diamine 3 and waste product 4, which cannot interact with one another anymore, remain in the solutions. DOSY spectra recorded at different reaction times definitely demonstrate the phenomenology described above. The trend of the degree of polymerization as a function of monomer concentration has been clarified in the light of the ring–chain equilibrium theory. The application of the theory enables the accurate evaluation of the distribution of linear and cyclic oligomers as well as the critical concentration, ccrit, above which polymerization rapidly becomes more extensive due to the saturation of macrocyclic species. Notably, the ACA is not used just as a stimulus for a dissipative system, but as one of its structural components.","PeriodicalId":49,"journal":{"name":"Journal of the American Chemical Society","volume":"280 1","pages":""},"PeriodicalIF":15.0,"publicationDate":"2026-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146111197","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Fluorination of the n = 2 Ruddlesden–Popper oxide, La3Ni2O7, with polyvinylidene fluoride yields La3Ni2O5F4, a phase in which fluoride ions have been inserted into interstitial sites in the Ruddlesden–Popper framework and also exchanged with the oxide ions residing on apical anion sites. Reaction with LiH at 190 °C reduces La3Ni2O5F4 by extracting interstitial fluoride ions. The resulting phase, La3Ni2O5F3, adopts a structure described in space group Pbcm in which the fluoride ions in the half-filled interstitial layer are arranged in chains parallel to the y-axis, and the NiO5F octahedra adopt an a–a–c+/–(a–a–)c+ tilting pattern. Further reduction with LiH at 250 °C converts La3Ni2O5F3 into La3Ni2O5F, a Ni1+ phase which adopts a T′-structure consisting of double infinite-sheets of apex linked NiO4 squares, stacked with LaOF fluorite-type layers. Magnetization and neutron diffraction data indicate La3Ni2O5F3 adopts an antiferromagnetically ordered state below TN = 225 K, while magnetization data from La3Ni2O5F exhibit a broad maximum centered at 75 K, suggestive of antiferromagnetic order.
n = 2 Ruddlesden-Popper氧化物La3Ni2O7与聚偏氟乙烯氟化反应生成La3Ni2O5F4,其中氟离子被插入Ruddlesden-Popper骨架的间隙位置,并与位于顶端阴离子位置的氧化物离子交换。与LiH在190℃下反应,通过提取间隙氟离子还原La3Ni2O5F4。所得相La3Ni2O5F3采用Pbcm空间基描述的结构,其中半填充的间隙层中的氟离子呈平行于y轴的链排列,NiO5F八面体呈a -a - c+/ - (a -a -)c+倾斜模式。在250℃下用LiH进一步还原,La3Ni2O5F3转化为La3Ni2O5F,这是一种Ni1+相,采用T '型结构,由双无限大的顶端连接的NiO4方形片组成,并堆叠有LaOF萤石型层。磁化和中子衍射数据表明,La3Ni2O5F3在TN = 225 K以下为反铁磁有序态,而La3Ni2O5F的磁化数据显示,在75 K处,La3Ni2O5F3为反铁磁有序态。
{"title":"Synthesis of the Double Infinite-Layer Ni(I) Phase La3Ni2O5F via Sequential Topochemical Reactions","authors":"Romain Wernert,Robert D. Smyth,Michael A. Hayward","doi":"10.1021/jacs.5c16740","DOIUrl":"https://doi.org/10.1021/jacs.5c16740","url":null,"abstract":"Fluorination of the n = 2 Ruddlesden–Popper oxide, La3Ni2O7, with polyvinylidene fluoride yields La3Ni2O5F4, a phase in which fluoride ions have been inserted into interstitial sites in the Ruddlesden–Popper framework and also exchanged with the oxide ions residing on apical anion sites. Reaction with LiH at 190 °C reduces La3Ni2O5F4 by extracting interstitial fluoride ions. The resulting phase, La3Ni2O5F3, adopts a structure described in space group Pbcm in which the fluoride ions in the half-filled interstitial layer are arranged in chains parallel to the y-axis, and the NiO5F octahedra adopt an a–a–c+/–(a–a–)c+ tilting pattern. Further reduction with LiH at 250 °C converts La3Ni2O5F3 into La3Ni2O5F, a Ni1+ phase which adopts a T′-structure consisting of double infinite-sheets of apex linked NiO4 squares, stacked with LaOF fluorite-type layers. Magnetization and neutron diffraction data indicate La3Ni2O5F3 adopts an antiferromagnetically ordered state below TN = 225 K, while magnetization data from La3Ni2O5F exhibit a broad maximum centered at 75 K, suggestive of antiferromagnetic order.","PeriodicalId":49,"journal":{"name":"Journal of the American Chemical Society","volume":"1 1","pages":""},"PeriodicalIF":15.0,"publicationDate":"2026-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146111261","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Fundamental limitations in structural reversibility and electrochemical performance have rendered anode materials a critical bottleneck for proton batteries and capacitors. While the rational design of intrinsic properties for metal oxides offers a promising route for advanced proton storage, the simultaneous realization of high-power and low-temperature operability remains a grand challenge. We show that topochemical preintercalation of protons and confined lattice water in hydrated molybdenum bronze modifies host lattice rearrangement and enables ultrafast proton-coupled electron transfer. Ion-fluid cointercalation mediates electrochemical reaction pathways to an unconventional three-proton insertion mechanism, enabling a state-of-the-art specific capacity of 407 mAh g-1, ultrahigh-rate capability exceeding 1000 C (500 A g-1), and ultralow-temperature adaptability (194.2 mAh g-1 at -80 °C). Comprehensive in situ crystal and interface evolution methods and theoretical calculations reveal a highly reversible and homogeneous protonation mechanism and enhanced interfacial transport, suppressing heterogeneous and unstable reaction kinetics of pristine MoO3. The hybrid proton capacitor with such a molybdenum bronze anode shows an unprecedented ultrahigh-power and ultralow-temperature performance, with excellent stability for over 2000 cycles at -80 °C. This work highlights physicochemical insights on preintercalation topochemistry in modulating charge carrier-host interactions and provides electrode design principles for high-rate and low-temperature nonmetallic ion storage.
结构可逆性和电化学性能的基本限制使阳极材料成为质子电池和电容器的关键瓶颈。虽然合理设计金属氧化物的固有性质为先进的质子存储提供了一条有希望的途径,但同时实现高功率和低温可操作性仍然是一个巨大的挑战。我们发现质子和约束晶格水在水合钼青铜中的拓扑化学预插修饰了主体晶格重排,并实现了超快的质子耦合电子转移。离子流体共插层将电化学反应途径转化为非常规的三质子插入机制,可实现407 mAh g-1的最先进比容量,超过1000℃(500 a g-1)的超高倍率容量,以及超低温适应性(-80℃时194.2 mAh g-1)。综合原位晶体和界面演化方法和理论计算揭示了一种高度可逆和均相的质子化机制,增强了界面传输,抑制了原始MoO3的非均相和不稳定反应动力学。采用这种钼青铜阳极的混合质子电容器表现出前所未有的超高功率和超低温性能,在-80℃下具有超过2000次循环的优异稳定性。这项工作强调了调制电荷载流子-宿主相互作用的插层前拓扑化学的物理化学见解,并为高速率和低温非金属离子存储提供了电极设计原则。
{"title":"Proton-Fluid Preintercalation Topochemistry for High-Rate Capacity and Ultralow-Temperature Proton Storage.","authors":"Tiezhu Xu, Tengyu Yao, Yuxuan Zhao, Zhenming Xu, Zhenhui Liu, Duo Chen, Kongjun Zhu, Laifa Shen","doi":"10.1021/jacs.5c21246","DOIUrl":"https://doi.org/10.1021/jacs.5c21246","url":null,"abstract":"<p><p>Fundamental limitations in structural reversibility and electrochemical performance have rendered anode materials a critical bottleneck for proton batteries and capacitors. While the rational design of intrinsic properties for metal oxides offers a promising route for advanced proton storage, the simultaneous realization of high-power and low-temperature operability remains a grand challenge. We show that topochemical preintercalation of protons and confined lattice water in hydrated molybdenum bronze modifies host lattice rearrangement and enables ultrafast proton-coupled electron transfer. Ion-fluid cointercalation mediates electrochemical reaction pathways to an unconventional three-proton insertion mechanism, enabling a state-of-the-art specific capacity of 407 mAh g<sup>-1</sup>, ultrahigh-rate capability exceeding 1000 C (500 A g<sup>-1</sup>), and ultralow-temperature adaptability (194.2 mAh g<sup>-1</sup> at -80 °C). Comprehensive in situ crystal and interface evolution methods and theoretical calculations reveal a highly reversible and homogeneous protonation mechanism and enhanced interfacial transport, suppressing heterogeneous and unstable reaction kinetics of pristine MoO<sub>3</sub>. The hybrid proton capacitor with such a molybdenum bronze anode shows an unprecedented ultrahigh-power and ultralow-temperature performance, with excellent stability for over 2000 cycles at -80 °C. This work highlights physicochemical insights on preintercalation topochemistry in modulating charge carrier-host interactions and provides electrode design principles for high-rate and low-temperature nonmetallic ion storage.</p>","PeriodicalId":49,"journal":{"name":"Journal of the American Chemical Society","volume":" ","pages":""},"PeriodicalIF":15.6,"publicationDate":"2026-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146117092","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Moritz Nau,Raka Ahmed,Susanne Leitherer,Gemma C. Solomon,Rainer F. Winter
The concept of aromaticity is one of the most fundamental principles for understanding the properties and reactivities of organic molecules. However, in molecular electronics research, it has been shown that aromaticity is not necessarily advantageous for electron transmission across electrode-molecule-electrode junctions. In this work, we introduce formally antiaromatic, yet planar N,N’-disubstituted dihydrophenazines as a compelling building block for exploring molecular conductance properties beyond the scope of classical aromatic molecules and compare anchor group-modified dihydrophenazines and structurally closely related anthracenes. We find that molecular conductance increases by 1.5 orders of magnitude from aromatic anthracenes to their phenazine congeners, where the central ring attains partially antiaromatic character. Oxidation of the dihydrophenazine core results accordingly in conductance attenuation.
{"title":"Oxidation of a Dihydrophenazine Molecular Wire Attenuates Molecular Conductance","authors":"Moritz Nau,Raka Ahmed,Susanne Leitherer,Gemma C. Solomon,Rainer F. Winter","doi":"10.1021/jacs.5c18249","DOIUrl":"https://doi.org/10.1021/jacs.5c18249","url":null,"abstract":"The concept of aromaticity is one of the most fundamental principles for understanding the properties and reactivities of organic molecules. However, in molecular electronics research, it has been shown that aromaticity is not necessarily advantageous for electron transmission across electrode-molecule-electrode junctions. In this work, we introduce formally antiaromatic, yet planar N,N’-disubstituted dihydrophenazines as a compelling building block for exploring molecular conductance properties beyond the scope of classical aromatic molecules and compare anchor group-modified dihydrophenazines and structurally closely related anthracenes. We find that molecular conductance increases by 1.5 orders of magnitude from aromatic anthracenes to their phenazine congeners, where the central ring attains partially antiaromatic character. Oxidation of the dihydrophenazine core results accordingly in conductance attenuation.","PeriodicalId":49,"journal":{"name":"Journal of the American Chemical Society","volume":"106 1","pages":""},"PeriodicalIF":15.0,"publicationDate":"2026-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146111221","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yu Zong,Nawei Zhang,Jason Lin,Zhizhong Li,Yuqiao Zou,Rohit Chaudhuri,Minkui Luo
Protein lysine methylation is a distinct class of post-translational modifications because it minimally alters the size and positive charge of the lysine side chain. In cellular contexts, the human genome encodes over 60 protein lysine methyltransferases (PKMTs), with the S-adenosyl-l-methionine (SAM) cofactor as the methyl donor, to modify thousands of lysine sites on histones and nonhistone targets in a highly orchestrated manner. The biological roles of protein lysine methylation are increasingly implicated in epigenetic regulation to define diverse cell fates, and their dysregulation is frequently associated with developmental abnormalities and various aspects of cancerous malignancy. However, it has been challenging to annotate the multiple upstream methyltransferase(s) in parallel from known methyllysine marks in the context of over 60 PKMT candidates with redundant and cell-type-dependent activities. We therefore envisioned the technology of Covalent Trapping of Protein Lysine Methyltransferases (CTPM) by assembling the ternary dead-end complex of PKMTs with substrate-cofactor surrogates. With SET-domain-containing PKMTs, the norleucine(Nle)-SAM pair was shown to be a robust structural motif to form such dead-end complexes, likely via harnessing the common feature of the transition state of PKMT-catalyzed lysine methylation. Our CTPM peptidic probes contain the Nle warhead in the place of substrate lysine, the photo-cross-linking residue in proximity of Nle, and the terminal biotin anchor for target enrichment. These CTPM probes, upon pairing with the SAM cofactor, show high efficiency in trapping the upstream PKMTs of the cognate histone and nonhistone substrates.
{"title":"Assembling Ternary Dead-End Complex for Covalent Trapping of Protein Lysine Methyltransferases","authors":"Yu Zong,Nawei Zhang,Jason Lin,Zhizhong Li,Yuqiao Zou,Rohit Chaudhuri,Minkui Luo","doi":"10.1021/jacs.5c14571","DOIUrl":"https://doi.org/10.1021/jacs.5c14571","url":null,"abstract":"Protein lysine methylation is a distinct class of post-translational modifications because it minimally alters the size and positive charge of the lysine side chain. In cellular contexts, the human genome encodes over 60 protein lysine methyltransferases (PKMTs), with the S-adenosyl-l-methionine (SAM) cofactor as the methyl donor, to modify thousands of lysine sites on histones and nonhistone targets in a highly orchestrated manner. The biological roles of protein lysine methylation are increasingly implicated in epigenetic regulation to define diverse cell fates, and their dysregulation is frequently associated with developmental abnormalities and various aspects of cancerous malignancy. However, it has been challenging to annotate the multiple upstream methyltransferase(s) in parallel from known methyllysine marks in the context of over 60 PKMT candidates with redundant and cell-type-dependent activities. We therefore envisioned the technology of Covalent Trapping of Protein Lysine Methyltransferases (CTPM) by assembling the ternary dead-end complex of PKMTs with substrate-cofactor surrogates. With SET-domain-containing PKMTs, the norleucine(Nle)-SAM pair was shown to be a robust structural motif to form such dead-end complexes, likely via harnessing the common feature of the transition state of PKMT-catalyzed lysine methylation. Our CTPM peptidic probes contain the Nle warhead in the place of substrate lysine, the photo-cross-linking residue in proximity of Nle, and the terminal biotin anchor for target enrichment. These CTPM probes, upon pairing with the SAM cofactor, show high efficiency in trapping the upstream PKMTs of the cognate histone and nonhistone substrates.","PeriodicalId":49,"journal":{"name":"Journal of the American Chemical Society","volume":"1 1","pages":""},"PeriodicalIF":15.0,"publicationDate":"2026-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146111223","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Emilee E. Shine,Julie S. Valastyan,Vanessa Y. Ying,Jonathan Z. Huang,Mohammad R. Seyedsayamdost,Bonnie L. Bassler
Bacteria use small molecules to orchestrate collective behaviors in a process called quorum sensing (QS), which relies on the production, release, and group-wide detection of extracellular signal molecules referred to as autoinducers. One QS autoinducer, termed AI-2, is broadly used for interspecies bacterial communication, including in the mammalian gut. AI-2 consists of a family of interconverting compounds and adducts originating from 4,5-dihydroxy-2,3-pentanedione. This complex speciation, coupled with the inherent instability of AI-2 congeners, have complicated isolation efforts. It has been known that mammalian epithelial cells produce an AI-2 mimic to which bacteria respond. However, the identity of the AI-2 mimic has remained elusive, presumably due to its instability, similar to that of known AI-2 compounds. Here, we developed a reactivity-based metabolomics approach to capture and identify a mammalian AI-2 mimic. Using a chemical strategy targeted at the α-diketone moiety of known AI-2s, we identify the unusual sugar l-xylosone, as well as the related metabolite l-xylulose, as AI-2 mimics. While l-xylulose is a common and naturally occurring sugar known in human metabolism, l-xylosone is a rare and highly reactive oxidation product. We established a facile synthetic route to access pure enantiomers of xylosone and confirmed that, like AI-2, the l-configuration is required for recognition by the bacterial AI-2 receptor, LuxP, whereas d-xylosone is inactive. l-xylosone is new to the human metabolome, suggesting that other chemically reactive small molecules that mediate host–microbe interactions await discovery. The identification of l-xylosone expands the AI-2 family of molecules and adds a new word to the lexicon of host–bacterial interactions.
{"title":"Discovery of a Human Metabolite That Mimics the Bacterial Quorum-Sensing Autoinducer AI-2","authors":"Emilee E. Shine,Julie S. Valastyan,Vanessa Y. Ying,Jonathan Z. Huang,Mohammad R. Seyedsayamdost,Bonnie L. Bassler","doi":"10.1021/jacs.5c18527","DOIUrl":"https://doi.org/10.1021/jacs.5c18527","url":null,"abstract":"Bacteria use small molecules to orchestrate collective behaviors in a process called quorum sensing (QS), which relies on the production, release, and group-wide detection of extracellular signal molecules referred to as autoinducers. One QS autoinducer, termed AI-2, is broadly used for interspecies bacterial communication, including in the mammalian gut. AI-2 consists of a family of interconverting compounds and adducts originating from 4,5-dihydroxy-2,3-pentanedione. This complex speciation, coupled with the inherent instability of AI-2 congeners, have complicated isolation efforts. It has been known that mammalian epithelial cells produce an AI-2 mimic to which bacteria respond. However, the identity of the AI-2 mimic has remained elusive, presumably due to its instability, similar to that of known AI-2 compounds. Here, we developed a reactivity-based metabolomics approach to capture and identify a mammalian AI-2 mimic. Using a chemical strategy targeted at the α-diketone moiety of known AI-2s, we identify the unusual sugar l-xylosone, as well as the related metabolite l-xylulose, as AI-2 mimics. While l-xylulose is a common and naturally occurring sugar known in human metabolism, l-xylosone is a rare and highly reactive oxidation product. We established a facile synthetic route to access pure enantiomers of xylosone and confirmed that, like AI-2, the l-configuration is required for recognition by the bacterial AI-2 receptor, LuxP, whereas d-xylosone is inactive. l-xylosone is new to the human metabolome, suggesting that other chemically reactive small molecules that mediate host–microbe interactions await discovery. The identification of l-xylosone expands the AI-2 family of molecules and adds a new word to the lexicon of host–bacterial interactions.","PeriodicalId":49,"journal":{"name":"Journal of the American Chemical Society","volume":"8 1","pages":""},"PeriodicalIF":15.0,"publicationDate":"2026-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146111226","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Dynamic covalent bonds (DCBs) enable reversible bond formation/cleavage, offering exciting possibilities for smart and adaptive materials, yet challenges such as slow kinetics and stringent conditions required for the reverse reaction currently hinder their broader use. We present a novel C-N σ-bond with exceptional reversibility and ultrafast kinetics (t1/2 = 200 ms) across diverse primary aliphatic amine substrates, occurring spontaneously under ambient conditions without catalysts or external energy input, which is enabled by remarkably low activation barriers and near-equilibrium energetics. We showcase this transformative DCB's versatility in reversible gas-fixation, programmable transamination, and construct the first reversible chemical probes for real-time quantitative tracking of spatiotemporal histamine dynamics in live cells and in vivo within the brain under inflammatory pathology. This work redefines C-N σ-bonds as dynamic linkages, opening avenues for innovation in organic chemistry, adaptive materials, and dynamic biosystems.
{"title":"De Novo Labile C-N Bonds Enable Dynamic Covalent Chemistry and Reversible Bioimaging.","authors":"Chenming Chan, Yating Wang, Jingjing Wan, Yujie Han, Zhaoli Xue, Yang Tian, Qi-Wei Zhang","doi":"10.1021/jacs.5c16437","DOIUrl":"https://doi.org/10.1021/jacs.5c16437","url":null,"abstract":"<p><p>Dynamic covalent bonds (DCBs) enable reversible bond formation/cleavage, offering exciting possibilities for smart and adaptive materials, yet challenges such as slow kinetics and stringent conditions required for the reverse reaction currently hinder their broader use. We present a novel C-N σ-bond with exceptional reversibility and ultrafast kinetics (<i>t</i><sub>1/2</sub> = 200 ms) across diverse primary aliphatic amine substrates, occurring spontaneously under ambient conditions without catalysts or external energy input, which is enabled by remarkably low activation barriers and near-equilibrium energetics. We showcase this transformative DCB's versatility in reversible gas-fixation, programmable transamination, and construct the first reversible chemical probes for real-time quantitative tracking of spatiotemporal histamine dynamics in live cells and in vivo within the brain under inflammatory pathology. This work redefines C-N σ-bonds as dynamic linkages, opening avenues for innovation in organic chemistry, adaptive materials, and dynamic biosystems.</p>","PeriodicalId":49,"journal":{"name":"Journal of the American Chemical Society","volume":" ","pages":""},"PeriodicalIF":15.6,"publicationDate":"2026-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146117067","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Some semiconductor materials exhibit axis-dependent conduction polarity (ADCP), where carrier transport is dominated by electrons along one crystallographic axis and holes along another. This unconventional transport behavior enables transverse thermoelectricity and other functionalities that are inaccessible in conventional isotropic/unipolar semiconductors. However, only a few ADCP materials have been identified, largely because the underlying electronic design principles have remained unclear. Here, we establish a quantitative framework that defines the electronic conditions required for ADCP to emerge and remain robust. Using a minimal two-band tight-binding model, we clarify that ADCP requires two key electronic conditions: a sufficiently small band gap that enables simultaneous electron–hole transport and strong anisotropy in carrier effective masses that causes their transport contributions to differ between axes. These parameters define a chemical-potential window in which axis-resolved Seebeck coefficients take opposite signs, identifying narrow-gap semiconductors and semimetals with anisotropic band edges as prime ADCP candidates. Guided by these criteria, we conduct a first-principles screening of 4282 anisotropic narrow-gap semiconductors and metals and identify 361 ADCP materials, which are predominantly found among chalcogenides, pnictides, and tetrel-based compounds, including 57 potential transverse thermoelectrics. Analysis of two representative materials, AlReGe and ZrSe3, reveals that ADCP originates from anisotropic band-edge states derived from low-dimensional bonding networks, resulting in spatially separated electron and hole transport on different crystal sublattices. These results provide chemically intuitive design rules for ADCP materials and establish a comprehensive data set for accelerating the development of transverse thermoelectrics and other next-generation electronic devices.
{"title":"Axis-Dependent Conduction Polarity: Design Principles and High-Throughput Discovery of Transverse Thermoelectrics","authors":"Zan Yang,Xinyi He,Hidetomo Usui,Toshio Kamiya,Takayoshi Katase","doi":"10.1021/jacs.5c22733","DOIUrl":"https://doi.org/10.1021/jacs.5c22733","url":null,"abstract":"Some semiconductor materials exhibit axis-dependent conduction polarity (ADCP), where carrier transport is dominated by electrons along one crystallographic axis and holes along another. This unconventional transport behavior enables transverse thermoelectricity and other functionalities that are inaccessible in conventional isotropic/unipolar semiconductors. However, only a few ADCP materials have been identified, largely because the underlying electronic design principles have remained unclear. Here, we establish a quantitative framework that defines the electronic conditions required for ADCP to emerge and remain robust. Using a minimal two-band tight-binding model, we clarify that ADCP requires two key electronic conditions: a sufficiently small band gap that enables simultaneous electron–hole transport and strong anisotropy in carrier effective masses that causes their transport contributions to differ between axes. These parameters define a chemical-potential window in which axis-resolved Seebeck coefficients take opposite signs, identifying narrow-gap semiconductors and semimetals with anisotropic band edges as prime ADCP candidates. Guided by these criteria, we conduct a first-principles screening of 4282 anisotropic narrow-gap semiconductors and metals and identify 361 ADCP materials, which are predominantly found among chalcogenides, pnictides, and tetrel-based compounds, including 57 potential transverse thermoelectrics. Analysis of two representative materials, AlReGe and ZrSe3, reveals that ADCP originates from anisotropic band-edge states derived from low-dimensional bonding networks, resulting in spatially separated electron and hole transport on different crystal sublattices. These results provide chemically intuitive design rules for ADCP materials and establish a comprehensive data set for accelerating the development of transverse thermoelectrics and other next-generation electronic devices.","PeriodicalId":49,"journal":{"name":"Journal of the American Chemical Society","volume":"88 1","pages":""},"PeriodicalIF":15.0,"publicationDate":"2026-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146111198","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Shilong Fu,Bowen Sha,Asvin Sajeev,Ming Li,Thijs J. H. Vlugt,Othonas A. Moultos,Wiebren de Jong,Ruud Kortlever
Electrochemical CO2 reduction to CO offers a sustainable route for converting CO2 into value-added chemicals and fuels. However, CO2 streams derived from industrial sources often contain SO2 impurities that severely poison conventional metal-based catalysts. Here, we report a nitrogen-doped carbon catalyst that exhibits pronounced tolerance and stability for CO2-to-CO conversion in the presence of SO2 (100–10,000 ppm). The catalyst maintains over 90% Faradaic efficiency toward CO during 8 h of electrolysis at −1.0 V vs RHE with 100 ppm of SO2, whereas Ag foil electrodes undergo rapid deactivation. Density functional theory calculations combined with surface analyses indicate that weak SO2 adsorption and the absence of stable sulfur accumulation on nitrogen-doped carbon strengthen its resistance to impurity-induced deactivation, in contrast to Ag catalysts that form Ag2S. Gas-fed tests in a membrane electrode assembly (MEA) electrolyzer further confirm that nitrogen-doped carbon sustains high CO selectivity at elevated current densities, while Ag nanoparticles suffer irreversible sulfur poisoning. These results demonstrate that nitrogen-doped carbon is intrinsically resistant to SO2-induced deactivation and highlight its potential as a robust catalyst for CO2 electroreduction under impurity-containing conditions.
电化学CO2还原为CO提供了将CO2转化为增值化学品和燃料的可持续途径。然而,来自工业来源的二氧化碳流通常含有SO2杂质,严重毒害传统的金属基催化剂。在这里,我们报道了一种氮掺杂碳催化剂,在SO2 (100-10,000 ppm)存在下,对co2到co的转化表现出明显的耐受性和稳定性。在−1.0 V vs RHE和100 ppm SO2条件下电解8 h,催化剂对CO的法拉第效率保持在90%以上,而银箔电极则快速失活。密度泛函理论计算结合表面分析表明,与形成Ag2S的Ag催化剂相比,氮掺杂碳对SO2的弱吸附和不存在稳定的硫积累增强了其对杂质诱导失活的抗性。在膜电极组件(MEA)电解槽中的气供测试进一步证实,氮掺杂碳在高电流密度下保持高CO选择性,而银纳米颗粒则遭受不可逆的硫中毒。这些结果表明,氮掺杂碳本质上抵抗二氧化硫诱导的失活,并突出了其作为含杂质条件下CO2电还原催化剂的潜力。
{"title":"Electrochemical CO2 Reduction in the Presence of SO2 Impurities on a Nitrogen-Doped Carbon Electrocatalyst","authors":"Shilong Fu,Bowen Sha,Asvin Sajeev,Ming Li,Thijs J. H. Vlugt,Othonas A. Moultos,Wiebren de Jong,Ruud Kortlever","doi":"10.1021/jacs.5c11790","DOIUrl":"https://doi.org/10.1021/jacs.5c11790","url":null,"abstract":"Electrochemical CO2 reduction to CO offers a sustainable route for converting CO2 into value-added chemicals and fuels. However, CO2 streams derived from industrial sources often contain SO2 impurities that severely poison conventional metal-based catalysts. Here, we report a nitrogen-doped carbon catalyst that exhibits pronounced tolerance and stability for CO2-to-CO conversion in the presence of SO2 (100–10,000 ppm). The catalyst maintains over 90% Faradaic efficiency toward CO during 8 h of electrolysis at −1.0 V vs RHE with 100 ppm of SO2, whereas Ag foil electrodes undergo rapid deactivation. Density functional theory calculations combined with surface analyses indicate that weak SO2 adsorption and the absence of stable sulfur accumulation on nitrogen-doped carbon strengthen its resistance to impurity-induced deactivation, in contrast to Ag catalysts that form Ag2S. Gas-fed tests in a membrane electrode assembly (MEA) electrolyzer further confirm that nitrogen-doped carbon sustains high CO selectivity at elevated current densities, while Ag nanoparticles suffer irreversible sulfur poisoning. These results demonstrate that nitrogen-doped carbon is intrinsically resistant to SO2-induced deactivation and highlight its potential as a robust catalyst for CO2 electroreduction under impurity-containing conditions.","PeriodicalId":49,"journal":{"name":"Journal of the American Chemical Society","volume":"88 1","pages":""},"PeriodicalIF":15.0,"publicationDate":"2026-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146111224","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}