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The ZAT14 family promotes cell death and regulates expansins to affect xylem formation and salt tolerance in Arabidopsis ZAT14家族促进拟南芥细胞死亡,调控扩张蛋白影响木质部形成和耐盐性
Pub Date : 2025-11-12 DOI: 10.1093/plcell/koaf271
Ming Feng, Amrit K Nanda, Frauke Augstein, Ai Zhang, Lihua Zhao, Nilam Malankar, Sam W van Es, Bernhard Blob, Shamik Mazumdar, Jung-Ok Heo, Pawel Roszak, Jinbo Hu, Yrjö Helariutta, Charles W Melnyk
The ability for stress to modify development is common in plants yet how external cues determine phenotypic outputs and developmental responses is not fully understood. Here, we uncovered a ZINC FINGER OF ARABIDOPSIS THALIANA14 (ZAT14) transcription factor whose expression was enhanced in differentiating xylem through its positive regulation by VASCULAR RELATED NAC-DOMAIN PROTEIN7 (VND7) yet decreased in root tips through its negative regulation by PLETHORA2 (PLT2) in Arabidopsis (Arabidopsis thaliana). Mutating ZAT14 and its closely related homologs, ZAT5, ZAT14L and ZAT15, disrupted vascular patterning and inhibited xylem differentiation indicating that ZATs are important for xylem formation. A transcriptome analysis of zat triple and quadruple mutants found that many cell wall-related genes were differentially expressed. In particular, ten expansin genes were repressed by ZATs and several were direct targets of the ZATs. We uncovered that salinity repressed ZAT14, ZAT14L and ZAT15 vascular expression, whereas zat mutants improved salinity tolerance, decreased xylem differentiation and reduced cell death mediated by salt. Furthermore, expansin mutants decreased salinity tolerance and increased xylem differentiation under salinity stress. We propose that ZATs are key regulators of programmed cell death that promote xylem formation, yet upon salinity stress, ZATs are repressed to inhibit cell death and improve salt tolerance, thus modifying developmental outputs in response to stress.
胁迫改变植物发育的能力在植物中很常见,但外界线索如何决定表型输出和发育反应尚不完全清楚。本研究发现,在拟南芥(ARABIDOPSIS thaliana)中,ZAT14 (ZINC FINGER OF ARABIDOPSIS thalian14)转录因子在木质部分化过程中通过维管相关NAC-DOMAIN蛋白7 (VND7)的正向调控而表达增强,而在根尖分化过程中通过PLETHORA2 (PLT2)的负向调控而表达降低。突变ZAT14及其密切相关的同系物ZAT5、ZAT14L和ZAT15,破坏维管模式,抑制木质部分化,表明zat对木质部形成很重要。对三倍和四倍突变体的转录组分析发现,许多细胞壁相关基因的表达存在差异。特别是,10个扩展蛋白基因被ZATs抑制,有几个是ZATs的直接靶点。我们发现盐度抑制了ZAT14、ZAT14L和ZAT15维管表达,而zat突变体提高了盐耐受性,降低了木质部分化,减少了盐介导的细胞死亡。此外,膨胀蛋白突变体降低了盐胁迫下的耐盐性,增加了木质部分化。我们认为ZATs是促进木质部形成的程序性细胞死亡的关键调节因子,但在盐胁迫下,ZATs被抑制以抑制细胞死亡并提高盐耐受性,从而改变对胁迫的发育输出。
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引用次数: 0
The peptide CmGAST1 integrates calcium and gibberellin signaling to regulate flowering in chrysanthemum. CmGAST1肽整合钙和赤霉素信号来调节菊花的开花。
Pub Date : 2025-11-11 DOI: 10.1093/plcell/koaf269
Wenwen Liu,Jiayin Li,Han Zhang,Zhiling Wang,Palinuer Aiwaili,Yixin Yuan,Ruihong Zeng,Hongfeng Huang,Zhaoyu Gu,Yanjie Xu,Junping Gao,Bo Hong,Xin Zhao
The decision to flower in chrysanthemum (Chrysanthemum morifolium) is controlled by the photoperiod imposed by the outside environment along with endogenous gibberellin levels. Small peptides have broad and critical functions throughout the plant life cycle, but whether and how small peptides are involved in photoperiod- and gibberellin-dependent regulation of flowering remain unclear. Here, we demonstrate that a GIBBERELLIC ACID-STIMULATED TRANSCRIPT (GAST) peptide family member, CmGAST1, promotes flowering in chrysanthemum by interacting with SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9 (SPL9), a key regulator of flowering in the age-dependent pathway. CmGAST1 expression was induced under short-day photoperiods and by gibberellin treatment. In addition, we show that a negative regulator of GA signaling GIBBERELLIC ACID INSENSITIVE (GAI) interacts with CALMODULIN 7 (CAM7), a key factor in calcium signaling, and the resulting CmCAM7-GAI complex directly suppresses CmGAST1 expression. Notably, short-day photoperiods induce the accumulation of bioactive gibberellins and Ca2+ in the shoot apex, thereby inhibiting CmGAI and CmCAM7, respectively, and releasing their inhibition of CmGAST1 expression. We propose that the peptide CmGAST1 integrates gibberellin and calcium signals, coordinating the photoperiod and aging pathways to accelerate chrysanthemum maturation and flowering.
菊花(chrysanthemum morifolium)的开花决定受外界环境施加的光周期和内源赤霉素水平的控制。小肽在整个植物生命周期中具有广泛而关键的功能,但小肽是否以及如何参与光周期和赤霉素依赖性的开花调节尚不清楚。在这里,我们证明了赤霉素酸刺激转录(GAST)肽家族成员CmGAST1通过与SQUAMOSA启动子结合蛋白样9 (SPL9)相互作用促进菊花开花,SPL9是年龄依赖通路中开花的关键调节因子。短日照和赤霉素处理诱导了CmGAST1的表达。此外,我们发现赤霉素(GIBBERELLIC ACID INSENSITIVE, GAI)信号通路的负调节因子与钙信号通路的关键因子CALMODULIN 7 (CAM7)相互作用,从而形成CmCAM7-GAI复合物,直接抑制CmGAST1的表达。值得注意的是,短日照诱导了生物活性赤霉素和Ca2+在茎尖的积累,从而分别抑制了CmGAI和CmCAM7,释放了它们对CmGAST1表达的抑制。我们认为CmGAST1肽整合赤霉素和钙信号,协调光周期和衰老途径,加速菊花的成熟和开花。
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引用次数: 0
The phylotranscriptomic profile of angiosperm seed development follows a reverse hourglass pattern 被子植物种子发育的系统转录组学特征遵循一个相反的沙漏模式
Pub Date : 2025-11-11 DOI: 10.1093/plcell/koaf266
Asif Ahmed Sami, Leónie Bentsink, Mariana A S Artur
The angiosperm seed life cycle encompasses three broad phases - embryogenesis, maturation, and germination. Seed maturation is particularly critical, bridging embryo development and germination while enabling accumulation of nutrient reserves and acquisition of traits like desiccation tolerance, essential for survival in diverse environments. While embryogenesis and germination in Arabidopsis thaliana are known to follow an hourglass-like phylotranscriptomic pattern (with higher gene expression conservation in the mid-stages), the transcriptomic landscape of seed maturation and the complete seed life cycle remain unexplored. Using publicly available RNA-seq data, we generated transcriptome age index (TAI) and transcriptome divergence index (TDI) profiles of all three phases of the Arabidopsis seed life cycle, revealing a reverse hourglass-like phylotranscriptome pattern. Seed maturation exhibited increased expression of younger genes with divergent expression patterns compared to embryogenesis and germination, which was conserved in other dicots and monocots. Tissue-specific analyses revealed that, in monocots, the endosperm has increased expression of younger genes during maturation. We found that, similar to pollen development, seed maturation is a pivotal phase enabling the expression of young, rapidly evolving genes. We propose the “out of the seed” hypothesis, where seed maturation serves as a landscape for expressing new genes and promoting functional specialization
被子植物种子的生命周期包括三个阶段——胚胎发生、成熟和萌发。种子成熟尤为关键,它是胚胎发育和萌发的桥梁,同时使营养储备的积累和干燥耐受性等性状的获得成为可能,这是在不同环境中生存所必需的。虽然已知拟南芥的胚胎发生和萌发遵循沙漏样的系统转录组模式(在中期具有较高的基因表达保守性),但种子成熟的转录组景观和完整的种子生命周期仍未被探索。利用公开的RNA-seq数据,我们生成了拟南芥种子生命周期所有三个阶段的转录组年龄指数(TAI)和转录组分化指数(TDI)图谱,揭示了一个反向沙漏样的系统转录组模式。与胚胎发生和萌发相比,种子成熟表现出较年轻基因的表达增加,但表达模式不同,这在其他双子叶和单子叶中保持不变。组织特异性分析显示,在单子房中,胚乳在成熟过程中增加了年轻基因的表达。我们发现,与花粉发育类似,种子成熟是一个关键阶段,使年轻的、快速进化的基因得以表达。我们提出了“种子外”假说,其中种子成熟作为表达新基因和促进功能专业化的景观
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引用次数: 0
Tiny Bryophytes: Nature’s Hidden Reservoirs of Powerful Anti-Cancer Compounds 微小的苔藓植物:自然界隐藏的强大抗癌化合物的储藏库
Pub Date : 2025-11-09 DOI: 10.1093/plcell/koaf268
Ruturaj S Shete, Maruti J Dhanavade, Mudasir A Dar, Shashikant J Chavan
Bryophytes are a promising source of bioactive compounds, offering a natural alternative to conventional anticancer drugs known for their cytotoxicity. This article highlights potent anticancer agents such as Marchantin A, Phytol, Perrottetin E, Phenanthrene, and Prenylated bibenzyls, which have demonstrated significant efficacy in inhibiting and destroying various cancer cell lines.
苔藓植物是一种很有前途的生物活性化合物来源,为传统的抗癌药物提供了一种天然的替代品,这些药物以其细胞毒性而闻名。本文重点介绍了有效的抗癌药物,如马尚肽A、叶绿醇、紫杉素E、菲和戊基联苯,它们在抑制和破坏各种癌细胞系方面表现出显著的功效。
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引用次数: 0
Population transcriptome and phenotype analyses reveal that Rht-D1b contributed a larger seedling root to modern bread wheat 群体转录组和表型分析表明,Rht-D1b对现代面包小麦的幼苗根有较大的贡献
Pub Date : 2025-11-09 DOI: 10.1093/plcell/koaf267
Xiaoming Wang, Peng Zhao, Xue Shi, Xiaolong Guo, Yuxiu Liu, Wenyang Hou, Mingzhu Cheng, Xueting Liu, Xiangjun Lai, James Simmonds, Wendy Harwood, Junzhe Wang, Zihui Liu, Liuying Huang, Dejun Han, Wanquan Ji, Cristobal Uauy, Jun Xiao, Zhensheng Kang, Shengbao Xu
The Green Revolution (GR) dramatically increased the yield of bread wheat (Triticum aestivum L.); however, whether and how GR reshaped the wheat root system remains largely unknown. Here, a large-scale transcriptomic and phenotypic investigation was performed on seedling roots of 406 worldwide bread wheat accessions, and this analysis revealed differences in the transcriptomes and phenotypes between landraces and modern cultivars. The GR allele Reduced height (Rht)-D1b was the main genetic factor driving this phenotypic diversity, and it conferred a significantly larger seedling root to modern cultivars by increasing cell length and root meristem size. In this case, the translational reinitiation of TaRht-D1 underlies the genetic effects of Rht-D1b. In contrast, another GR allele, Rht-B1b, has no significant effect on root-related traits, although both alleles have similar genetic effects on reducing plant height. This unexpected effect of Rht-D1b on root systems, coupled with its effect on plant height, contributes to a substantially larger root-shoot ratio in modern wheat cultivars. These findings reveal previously overlooked benefits of GR alleles in modern wheat cultivars and provide clues for their future application in enhancing the seminal root system.
绿色革命(GR)显著提高了面包小麦(Triticum aestivum L.)的产量;然而,GR是否以及如何重塑了小麦根系,在很大程度上仍然未知。本文对406个世界面包小麦品种的幼苗根系进行了大规模的转录组学和表型分析,揭示了地方品种和现代品种之间的转录组学和表型差异。GR等位基因降低高度(Rht)-D1b是导致这种表型多样性的主要遗传因素,它通过增加细胞长度和根分生组织大小,赋予现代品种更大的幼苗根。在这种情况下,TaRht-D1的翻译重新启动是Rht-D1b遗传效应的基础。相比之下,另一个GR等位基因Rht-B1b对根相关性状没有显著影响,尽管这两个等位基因在降低株高方面具有相似的遗传效应。Rht-D1b对根系的这种意想不到的影响,加上对株高的影响,导致现代小麦品种的根冠比显著提高。这些发现揭示了GR等位基因在现代小麦品种中被忽视的益处,并为其未来在增强种子根系方面的应用提供了线索。
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引用次数: 0
NUP5°c defines a conserved nuclear basket module with NUP82 and NUP136 to mediate mRNA export and gene regulation in plants NUP5°c与NUP82和NUP136定义了一个保守的核篮模块,介导植物mRNA输出和基因调控
Pub Date : 2025-11-09 DOI: 10.1093/plcell/koaf260
Xiangyun Yang, Yingtang Ma, Bingyue Geng, Xiao Liu, Yan Liu, Jiaxing Sun, Hongze Liao, Yangnan Gu, Yu Tang
The nuclear basket (NB) is a key peripheral structure of the nuclear pore complex (NPC) that plays essential roles in eukaryotic mRNA surveillance and export, chromatin organization, and gene expression regulation. However, the architectural and functional mechanisms of plant NB remain poorly characterized. Here, we combined proximity labeling with fluorescence imaging to examine NUP5°c, a paralog of NUP50 in Arabidopsis thaliana. Unlike its nucleoplasmic paralogs NUP50a/b, NUP5°c localizes specifically to the NB at the nuclear periphery. Structural analysis revealed that NUP5°c contains conserved α-helices that mediate its interaction with the β-sheets of NUP82, enabling its NPC anchoring. AlphaFold-Multimer modeling and protein-protein interaction assays using yeast and Nicotiana benthamiana confirmed the formation of an evolutionarily conserved NUP50c-NUP82-NUP136 complex in Arabidopsis, Oryza sativa, and Solanum lycopersicum. Notably, simultaneous disruption of NUP5°c with NUP136 or with both NUP82 and NUP136 resulted in developmental defects and enhanced stress responses, accompanied by altered transcript profiles, and pronounced nuclear mRNA retention. These findings establish NUP5°c as a bona fide NB component that cooperates with NUP82/NUP136 to mediate mRNA export and regulate gene expression, advancing our understanding of the assembly and function of the NB in plants.
核筐(nuclear basket, NB)是核孔复合体(nuclear pore complex, NPC)的关键外周结构,在真核生物mRNA的监视和输出、染色质组织和基因表达调控中起着重要作用。然而,植物NB的结构和功能机制仍然不清楚。在这里,我们结合接近标记和荧光成像来检测NUP5°c,这是拟南芥中NUP50的类似物。与其核质相似物NUP50a/b不同,NUP5°c特异性定位于核周围的NB。结构分析表明,NUP5°c含有保守的α-螺旋,介导其与NUP82的β-片的相互作用,使其能够锚定NPC。利用酵母和benthamiana进行的alphafold - multitimer模型和蛋白-蛋白相互作用分析证实,拟南芥、水稻和番茄中形成了一个进化保守的NUP50c-NUP82-NUP136复合物。值得注意的是,NUP5°c同时被NUP136或NUP82和NUP136破坏,会导致发育缺陷和应激反应增强,并伴随着转录谱的改变和明显的核mRNA保留。这些发现证实了NUP5°c是一个真正的NB组分,它与NUP82/NUP136协同介导mRNA输出和调控基因表达,促进了我们对NB在植物中的组装和功能的理解。
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引用次数: 0
Convergence and constraint in glucosinolate evolution across the Brassicaceae 十字花科硫代葡萄糖苷进化的趋同与约束
Pub Date : 2025-11-08 DOI: 10.1093/plcell/koaf254
Amanda Agosto Ramos, Kevin A Bird, Annanya Jain, Gabriel Philip Sumo, Odinaka Okegbe, Lucy Holland, Daniel J Kliebenstein
Diversity in plant specialized metabolites plays critical roles in plant–environment interactions. In longer evolutionary scales, e.g. between families or orders, this diversity arises from whole-genome and tandem duplication events. Less is known about the evolutionary patterns that shape chemical diversity at shorter scales, e.g. within a family. Utilizing the aliphatic glucosinolate pathway, we explored how the genes encoding the terminal structural modification enzyme GSL-OH evolved across the Brassicaceae and the genomic processes that control presence–absence variation of its products (R)-2-hydroxy-but-3-enyl and (S)-2-hydroxy-but-3-enyl glucosinolate. We implemented a phylo-functional approach to functionally validate GSL-OH orthologs across the Brassicaceae and used that information to map the genomic origin and trajectory of the locus. This uncovered a complex mechanism involving at least 3 ancestral loci with extensive gene loss across all species, creating unequal retention across the phylogenetic relationships. Convergent evolution in enantiomeric specificity was observed, where several independent species had tandem duplicates that diverged toward producing the R or S enantiomers. To explore potential biological differences between the enantiomers, we performed Trichoplusia ni larval choice assays and tested resistance against Botrytis cinerea in a detached leaf assay. We found that plants with the S-enantiomer were more susceptible to B. cinerea infection than to T. ni larval herbivory, while plants with the R-enantiomer seemed more susceptible to T. ni larval herbivory when compared to B. cinerea. Ultimately, we observed recurrent GSL-OH loss, uncovered a complex origin story for the gene, and measured the bioactivity of the enzyme's metabolic products.
植物代谢产物的多样性在植物与环境的相互作用中起着至关重要的作用。在较长的进化尺度上,例如在家族或目之间,这种多样性源于全基因组和串联复制事件。在较短的尺度上,例如在一个家庭中,形成化学多样性的进化模式所知甚少。利用脂肪族硫代葡萄糖苷途径,我们探索了编码末端结构修饰酶GSL-OH的基因是如何在十字花科植物中进化的,以及控制其产物(R)-2-羟基-3-烯基和(S)-2-羟基-3-烯基硫代葡萄糖苷存在-缺失变异的基因组过程。我们实施了一种系统功能方法来功能性验证整个十字花科的GSL-OH同源物,并使用该信息来绘制该位点的基因组起源和轨迹。这揭示了一个复杂的机制,涉及至少3个祖先位点,在所有物种中广泛的基因丢失,在系统发育关系中造成不平等的保留。对映体特异性的趋同进化被观察到,其中几个独立的物种具有串联重复,朝着产生R或S对映体的方向分化。为了探索对映体之间潜在的生物学差异,我们进行了毛癣菌幼虫选择试验,并在离体叶片试验中测试了对灰霉病菌的抗性。结果表明,具有s -对映体的植物对灰葡萄球菌感染的敏感性高于草食性灰葡萄球菌,而具有r -对映体的植物对草食性灰葡萄球菌感染的敏感性高于草食性灰葡萄球菌。最终,我们观察到复发性GSL-OH丢失,揭示了该基因的复杂起源故事,并测量了该酶代谢产物的生物活性。
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引用次数: 0
A shield of phosphorylation: MPK3/6 protect STOP1 from PUB24-mediated degradation under hypoxia. 磷酸化的屏蔽:MPK3/6在缺氧条件下保护STOP1免受pub24介导的降解。
Pub Date : 2025-11-07 DOI: 10.1093/plcell/koaf270
Jiajun Wang,Yueyao Wang
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引用次数: 0
A species-specific tale of Quantitative disease resistance (QDR) in tomato. 番茄数量抗病(QDR)的种特异性研究。
Pub Date : 2025-11-05 DOI: 10.1093/plcell/koaf263
Pei Qin Ng
{"title":"A species-specific tale of Quantitative disease resistance (QDR) in tomato.","authors":"Pei Qin Ng","doi":"10.1093/plcell/koaf263","DOIUrl":"https://doi.org/10.1093/plcell/koaf263","url":null,"abstract":"","PeriodicalId":501012,"journal":{"name":"The Plant Cell","volume":"80 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-11-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145472784","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A needle in the haystack: Single-cell omics of the distinct xylem differentiation programs in gymnosperms and angiosperms. 大海捞针:裸子植物和被子植物中不同木质部分化程序的单细胞组学。
Pub Date : 2025-11-05 DOI: 10.1093/plcell/koaf262
Leonard Blaschek
{"title":"A needle in the haystack: Single-cell omics of the distinct xylem differentiation programs in gymnosperms and angiosperms.","authors":"Leonard Blaschek","doi":"10.1093/plcell/koaf262","DOIUrl":"https://doi.org/10.1093/plcell/koaf262","url":null,"abstract":"","PeriodicalId":501012,"journal":{"name":"The Plant Cell","volume":"26 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-11-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145472785","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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The Plant Cell
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