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MIR164B ensures robust Arabidopsis leaf development by compensating for compromised POLYCOMB REPRESSIVE COMPLEX2 function MIR164B 可弥补 POLYCOMB REPRESSIVE COMPLEX2 功能的缺陷,从而确保拟南芥叶片的稳健发育
Pub Date : 2024-10-07 DOI: 10.1093/plcell/koae260
Aude Maugarny, Aurélie Vialette, Bernard Adroher, Anne-Sophie Sarthou, Nathalie Mathy-Franchet, Marianne Azzopardi, Antoine Nicolas, François Roudier, Patrick Laufs
Robustness is pervasive throughout biological systems, enabling them to maintain persistent outputs despite perturbations in their components. Here, we reveal a mechanism contributing to leaf morphology robustness in the face of genetic perturbations. In Arabidopsis (Arabidopsis thaliana), leaf shape is established during early development through the quantitative action of the CUP-SHAPED COTYLEDON2 (CUC2) protein, whose encoding gene is negatively regulated by the co-expressed MICRORNA164A (MIR164A) gene. Compromised epigenetic regulation due to defective Polycomb Repressive Complex 2 (PRC2) function results in the transcriptional derepression of CUC2 but has no impact on CUC2 protein dynamics or early morphogenesis. We solve this apparent paradox by showing that compromised PRC2 function simultaneously derepresses the expression of another member of the MIR164 gene family, MIR164B. This mechanism dampens CUC2 protein levels, thereby compensating for compromised PRC2 function and canalizing early leaf morphogenesis. Furthermore, we show that this compensation mechanism is active under different environmental conditions. Our findings shed light on how the interplay between different steps of gene expression regulation can contribute to developmental robustness.
稳健性在整个生物系统中普遍存在,它使生物系统在其组成部分受到干扰的情况下仍能保持持续的输出。在这里,我们揭示了一种有助于叶片形态在面对遗传扰动时保持稳健性的机制。在拟南芥(Arabidopsis thaliana)中,叶片形状是在早期发育过程中通过CUP-SHAPED COTYLEDON2(CUC2)蛋白的定量作用建立起来的,CUC2蛋白的编码基因受共同表达的MICRORNA164A(MIR164A)基因的负调控。由于多聚核抑制复合体 2(PRC2)功能缺陷导致的表观遗传调控失灵会导致 CUC2 的转录抑制减弱,但对 CUC2 蛋白的动态或早期形态发生却没有影响。我们通过研究发现,PRC2 功能受损会同时抑制 MIR164 基因家族另一成员 MIR164B 的表达,从而解决了这一明显的悖论。这一机制抑制了 CUC2 蛋白水平,从而弥补了 PRC2 功能的缺陷,并使早期叶片形态发生得以渠化。此外,我们还发现这种补偿机制在不同的环境条件下都很活跃。我们的发现揭示了基因表达调控的不同步骤之间的相互作用如何有助于发育的稳健性。
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引用次数: 0
The difference is black and green: How functional divergence of an enzyme family gave us diverse teas. 黑茶和绿茶的区别一个酶家族的功能分化如何造就了多种多样的茶叶。
Pub Date : 2024-10-07 DOI: 10.1093/plcell/koae272
Vicky Howe
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引用次数: 0
The potato RNA metabolism machinery is targeted by the cyst nematode effector RHA1B for successful parasitism 马铃薯 RNA 代谢机制是孢囊线虫效应子 RHA1B 成功寄生的目标
Pub Date : 2024-09-26 DOI: 10.1093/plcell/koae264
Li Huang, Yulin Yuan, Chloe Lewis, Chao Xia, Cankui Zhang, Joanna Kud, Joseph C Kuhl, Allan Caplan, Louise-Marie Dandurand, Fangming Xiao
The potato (Solanum tuberosum) cyst nematode Globodera pallida induces a multinucleate feeding site (syncytium) in potato roots as its sole source of nutrition. Here, we demonstrate that the G. pallida effector RING-H2 finger A1b (RHA1B), which is a functional ubiquitin ligase, interferes with the carbon catabolite repression 4 (CCR4)-negative on TATA-less (NOT) deadenylase-based RNA metabolism machinery that regulates syncytium development in G. pallida-infected potato. Specifically, RHA1B targets the CCR4-associated factor 1 (CAF1) and StNOT10 subunits of the CCR4-NOT complex for proteasome-mediated degradation, leading to upregulation of the cyclin gene StCycA2 involved in syncytium formation. The StCAF1 subunit of CCR4-NOT recruits the RNA binding protein StPUM5 to deadenylate StCycA2 mRNA, resulting in shortened poly-A tails of StCycA2 mRNA and subsequently reduced transcript levels. Knockdown of either subunit (StCAF1 or StNOT10) of the CCR4-NOT complex or StPUM5 in transgenic potato plants resulted in enlarged syncytia and enhanced susceptibility to G. pallida infection, which resembles the phenotypes of StCycA2 overexpression transgenic potato plants. Genetic analyses indicate that transgenic potato plants overexpressing RHA1B exhibit similar phenotypes as transgenic potato plants with knockdown of StNOT10, StCAF1, or StPUM5. Thus, our data suggest that G. pallida utilizes the RHA1B effector to manipulate RNA metabolism in host plants, thereby promoting syncytium development for parasitic success.
马铃薯(Solanum tuberosum)胞囊线虫 Globodera pallida 在马铃薯根部诱导多核取食部位(合胞体),作为其唯一的营养来源。在这里,我们证明了 G. pallida 的效应物 RING-H2 finger A1b (RHA1B)(它是一种功能性泛素连接酶)干扰了碳代谢抑制 4 (CCR4)-Negative on TATA-less (NOT) 死氨酰化酶为基础的 RNA 代谢机制,该机制调控 G. pallida 感染马铃薯中合胞体的发育。具体来说,RHA1B 以 CCR4-NOT 复合物中的 CCR4-associated factor 1 (CAF1) 和 StNOT10 亚基为靶标,进行蛋白酶体介导的降解,导致参与合胞体形成的细胞周期蛋白基因 StCycA2 上调。CCR4-NOT 的 StCAF1 亚基会招募 RNA 结合蛋白 StPUM5,使 StCycA2 mRNA 死链,导致 StCycA2 mRNA 的 poly-A 尾缩短,转录水平随之降低。在转基因马铃薯植株中敲除 CCR4-NOT 复合物的任一亚基(StCAF1 或 StNOT10)或 StPUM5 会导致合胞体增大,并增强对 G. pallida 感染的敏感性,这与 StCycA2 过表达转基因马铃薯植株的表型相似。遗传分析表明,过表达 RHA1B 的转基因马铃薯植株与敲除 StNOT10、StCAF1 或 StPUM5 的转基因马铃薯植株表现出相似的表型。因此,我们的数据表明,G. pallida 利用 RHA1B 效应器来操纵寄主植物的 RNA 代谢,从而促进合胞体的发育,使寄生成功。
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引用次数: 0
Turning the page on front matter: Wishing Nan Eckardt a joyful retirement. 翻开头版祝愿 Nan Eckardt 退休生活愉快。
Pub Date : 2024-09-25 DOI: 10.1093/plcell/koae241
Ralph S Quatrano,Richard A Jorgensen,Cathie Martin,Sabeeha S Merchant,Blake C Meyers
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引用次数: 0
I want to break free: Expression of matrix metalloproteinases is necessary for cell hatching in Chlamydomonas reinhardtii. 我想挣脱束缚基质金属蛋白酶的表达是衣藻细胞孵化的必要条件
Pub Date : 2024-09-25 DOI: 10.1093/plcell/koae263
Mariana Schuster
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引用次数: 0
Membrane protein provision controls prothylakoid biogenesis in tobacco etioplasts 膜蛋白供应控制烟草根细胞中原生质的生物生成
Pub Date : 2024-09-25 DOI: 10.1093/plcell/koae259
Bingqi Li, Tegan Armarego-Marriott, Łucja Kowalewska, Wolfram Thiele, Alexander Erban, Stephanie Ruf, Joachim Kopka, Mark Aurel Schöttler, Ralph Bock
The cytochrome b559 heterodimer is a conserved component of photosystem II whose physiological role in photosynthetic electron transfer is enigmatic. A particularly puzzling aspect of cytochrome b559 has been its presence in etiolated seedlings, where photosystem II is absent. Whether or not the cytochrome has a specific function in etioplasts is unknown. Here, we have attempted to address the function of cytochrome b559 by generating transplastomic tobacco (Nicotiana tabacum) plants that overexpress psbE and psbF, the plastid genes encoding the two cytochrome b559 apoproteins. We show that strong overaccumulation of the PsbE apoprotein can be achieved in etioplasts by suitable manipulations of the promoter and the translation signals, while the cytochrome b559 level is only moderately elevated. The surplus PsbE protein causes striking ultrastructural alterations in etioplasts; most notably, it causes a condensed prolamellar body and a massive proliferation of prothylakoids, with multiple membrane layers coiled into spiral-like structures. Analysis of plastid lipids revealed that increased PsbE biosynthesis strongly stimulated plastid lipid biosynthesis, suggesting that membrane protein abundance controls prothylakoid membrane biogenesis. Our data provide evidence for a structural role of PsbE in prolamellar body formation and prothylakoid biogenesis, and indicate that thylakoid membrane protein abundance regulates lipid biosynthesis in etioplasts.
细胞色素 b559 异源二聚体是光系统 II 的一个保守成分,它在光合电子传递中的生理作用令人费解。细胞色素 b559 尤为令人费解的一点是,它存在于没有光系统 II 的幼苗中。细胞色素 b559 在蚀生体中是否具有特定功能尚不清楚。在这里,我们试图通过产生过表达 psbE 和 psbF(编码两种细胞色素 b559 蛋白的质体基因)的转质体烟草(Nicotiana tabacum)植株来解决细胞色素 b559 的功能问题。我们的研究表明,通过对启动子和翻译信号的适当处理,可以在等位质体中实现 PsbE 蛋白的过度积累,而细胞色素 b559 的水平仅有适度升高。过剩的 PsbE 蛋白会导致质粒的超微结构发生显著变化,最明显的变化是质粒体缩合,原核大量增殖,多层膜盘绕成螺旋状结构。质体脂质的分析表明,PsbE 生物合成的增加强烈刺激了质体脂质的生物合成,这表明膜蛋白的丰度控制着原胞膜的生物发生。我们的数据为 PsbE 在原绒毛体形成和原皮层膜生物生成过程中的结构作用提供了证据,并表明原皮层膜蛋白丰度调控着根瘤细胞中的脂质生物合成。
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引用次数: 0
The transcription factor CAMTA2 interacts with the histone acetyltransferase GCN5 and regulates grain weight in wheat 转录因子 CAMTA2 与组蛋白乙酰转移酶 GCN5 相互作用并调节小麦的粒重
Pub Date : 2024-09-25 DOI: 10.1093/plcell/koae261
Ruijie Zhang, Kexin An, Yujiao Gao, Zhaoheng Zhang, Xiaobang Zhang, Xue Zhang, Vincenzo Rossi, Yuan Cao, Jun Xiao, Mingming Xin, Jinkun Du, Zhaorong Hu, Jie Liu, Huiru Peng, Zhongfu Ni, Qixin Sun, Yingyin Yao
Grain weight and size are major traits targeted in breeding to improve wheat (Triticum aestivum L.) yield. Here, we find that the histone acetyltransferase GENERAL CONTROL NONDEREPRESSIBLE 5 (GCN5) physically interacts with the calmodulin-binding transcription factor CAMTA2 and regulates wheat grain size and weight. gcn5 mutant grains were smaller and contained less starch. GCN5 promoted the expression of the starch biosynthesis genes SUCROSE SYNTHASE 2 (Sus2) and STARCH-BRANCHING ENZYME Ic (SBEIc) by regulating H3K9ac and H3K14ac levels in their promoters. Moreover, immunoprecipitation followed by mass spectrometry (IP–MS) revealed that CAMTA2 physically interacts with GCN5. The CAMTA2–GCN5 complex activated Sus2 and SBEIc by directly binding to their promoters and depositing H3K9ac and H3K14ac marks during wheat endosperm development. camta2 knockout mutants exhibited similar phenotypes to gcn5 mutants, including smaller grains that contained less starch. In gcn5 mutants, transcripts of high molecular weight (HMW) Glutenin (Glu) genes were downregulated, leading to reduced HMW glutenin protein levels, gluten content, and sodium dodecyl sulfate (SDS) sedimentation volume. However, the association of GCN5 with Glu genes was independent of CAMTA2, since GCN5 enrichment on Glu promoters was unchanged in camta2 knockouts. Finally, we identified a CAMTA2-AH3 elite allele that corresponded with enhanced grain size and weight, serving as a candidate gene for breeding wheat varieties with improved grain weight.
粒重和粒径是提高小麦(Triticum aestivum L.)产量的主要育种目标性状。在这里,我们发现组蛋白乙酰转移酶 GENERAL CONTROL NONDEREPRESSIBLE 5(GCN5)与钙调蛋白结合转录因子 CAMTA2 有物理相互作用,并能调节小麦的粒度和重量。GCN5 通过调节淀粉生物合成基因 SUCROSE SYNTHASE 2(Sus2)和 STARCH-BRANCHING ENZYME Ic(SBEIc)启动子中的 H3K9ac 和 H3K14ac 水平,促进了这两个基因的表达。此外,免疫沉淀后质谱分析(IP-MS)显示,CAMTA2 与 GCN5 存在物理相互作用。在小麦胚乳发育过程中,CAMTA2-GCN5复合物通过直接与Sus2和SBEIc的启动子结合并沉积H3K9ac和H3K14ac标记,激活了它们。在 gcn5 突变体中,高分子量(HMW)谷蛋白(Glu)基因的转录物下调,导致高分子量谷蛋白水平、谷蛋白含量和十二烷基硫酸钠(SDS)沉降体积降低。然而,GCN5 与 Glu 基因的关联与 CAMTA2 无关,因为 GCN5 在 Glu 启动子上的富集在 camta2 基因敲除子中没有变化。最后,我们发现了一个 CAMTA2-AH3 精英等位基因,它与粒径和粒重的增加相对应,可作为培育粒重增加的小麦品种的候选基因。
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引用次数: 0
Hijacking QSK1: How pathogens turn a plant defense guardian into an accomplice. 劫持 QSK1:病原体如何把植物防御卫士变成帮凶?
Pub Date : 2024-09-25 DOI: 10.1093/plcell/koae262
Shanice S Webster
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引用次数: 0
Light at the end of the tunnel: FRAP assays combined with super resolution microscopy confirm the presence of a tubular vacuole network in meristematic plant cells 隧道尽头的曙光FRAP 检测与超分辨率显微镜相结合,证实分生植物细胞中存在管状液泡网络
Pub Date : 2024-09-21 DOI: 10.1093/plcell/koae243
David Scheuring, Elena A Minina, Falco Krueger, Upendo Lupanga, Melanie Krebs, Karin Schumacher
Plant vacuoles play key roles in cellular homeostasis, performing catabolic and storage functions, and regulating pH and ion balance. Despite their essential role, there is still no consensus on how vacuoles are established. A model proposing that the endoplasmic reticulum is the main contributor of membrane for growing vacuoles in meristematic cells has been challenged by a study proposing that plant vacuoles are formed de novo by homotypic fusion of multivesicular bodies (MVBs). Here, we use the Arabidopsis thaliana root as a model system to provide a systematic overview of successive vacuole biogenesis stages, starting from the youngest cells proximate to the quiescent center. We combine in vivo high- and super-resolution (STED) microscopy to demonstrate the presence of tubular and connected vacuolar structures in all meristematic cells. Using customized fluorescence recovery after photobleaching (FRAP) assays, we establish different modes of connectivity and demonstrate that thin, tubular vacuoles, as observed in cells near the quiescent center, form an interconnected network. Finally, we argue that a growing body of evidence indicates that vacuolar structures cannot originate from MVBs alone but receive membrane material from different sources simultaneously.
植物液泡在细胞平衡中发挥着关键作用,具有分解代谢和储存功能,并能调节 pH 值和离子平衡。尽管液泡发挥着重要作用,但人们对液泡是如何形成的仍未达成共识。有研究提出,植物液泡是通过多囊体(MVBs)的同型融合从新形成的,这对提出内质网是分生细胞中生长液泡的主要膜贡献者的模型提出了挑战。在这里,我们以拟南芥根为模型系统,从接近静止中心的最年轻细胞开始,系统地概述了液泡的连续生物发生阶段。我们结合体内高分辨和超分辨(STED)显微镜,证明了所有分生组织细胞中都存在管状和相连的液泡结构。利用定制的光漂白后荧光恢复(FRAP)测定,我们建立了不同的连接模式,并证明在静止中心附近的细胞中观察到的细管状液泡形成了一个相互连接的网络。最后,我们认为,越来越多的证据表明,液泡结构不可能仅源于 MVB,而是同时接收来自不同来源的膜材料。
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引用次数: 0
From the archives: On abiotic stress signaling: An ON/OFF switch for the heat stress response in wheat, connecting gibberellin signaling and salt stress, and calcium homeostasis and stress sensitivity. 来自档案:非生物胁迫信号:小麦热胁迫反应的开关、赤霉素信号传导与盐胁迫的联系、钙稳态与胁迫敏感性。
Pub Date : 2024-09-20 DOI: 10.1093/plcell/koae258
Leiyun Yang
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引用次数: 0
期刊
The Plant Cell
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