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Modelling phytoplankton-virus interactions: phytoplankton blooms and lytic virus transmission. 浮游植物与病毒的相互作用建模:浮游植物藻华与裂解病毒传播。
IF 1.9 4区 数学 Q2 BIOLOGY Pub Date : 2024-05-02 DOI: 10.1007/s00285-024-02093-w
Jimin Zhang, Yawen Yan, Junping Shi

A dynamic reaction-diffusion model of four variables is proposed to describe the spread of lytic viruses among phytoplankton in a poorly mixed aquatic environment. The basic ecological reproductive index for phytoplankton invasion and the basic reproduction number for virus transmission are derived to characterize the phytoplankton growth and virus transmission dynamics. The theoretical and numerical results from the model show that the spread of lytic viruses effectively controls phytoplankton blooms. This validates the observations and experimental results of Emiliana huxleyi-lytic virus interactions. The studies also indicate that the lytic virus transmission cannot occur in a low-light or oligotrophic aquatic environment.

提出了一个由四个变量组成的动态反应-扩散模型,以描述在混合不良的水生环境中溶菌病毒在浮游植物间的传播。得出了浮游植物入侵的基本生态繁殖指数和病毒传播的基本繁殖数,从而描述了浮游植物生长和病毒传播的动态特征。模型的理论和数值结果表明,溶菌病毒的传播能有效控制浮游植物的繁殖。这验证了对 Emiliana huxleyi- 溶菌病毒相互作用的观察和实验结果。研究还表明,在低光照或寡营养的水生环境中不会发生溶菌病毒传播。
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引用次数: 0
Threshold dynamics of a reaction–advection–diffusion schistosomiasis epidemic model with seasonality and spatial heterogeneity 具有季节性和空间异质性的反应-平流-扩散血吸虫病流行模型的阈值动力学
IF 1.9 4区 数学 Q2 BIOLOGY Pub Date : 2024-04-30 DOI: 10.1007/s00285-024-02097-6
Peng Wu, Yurij Salmaniw, Xiunan Wang

Most water-borne disease models ignore the advection of water flows in order to simplify the mathematical analysis and numerical computation. However, advection can play an important role in determining the disease transmission dynamics. In this paper, we investigate the long-term dynamics of a periodic reaction–advection–diffusion schistosomiasis model and explore the joint impact of advection, seasonality and spatial heterogeneity on the transmission of the disease. We derive the basic reproduction number ({mathcal {R}}_0) and show that the disease-free periodic solution is globally attractive when ({mathcal {R}}_0<1) whereas there is a positive endemic periodic solution and the system is uniformly persistent in a special case when ({mathcal {R}}_0>1). Moreover, we find that ({mathcal {R}}_0) is a decreasing function of the advection coefficients which offers insights into why schistosomiasis is more serious in regions with slow water flows.

大多数水媒疾病模型都忽略了水流的平流,以简化数学分析和数值计算。然而,平流在决定疾病传播动态方面可以发挥重要作用。本文研究了周期性反应-平流-扩散血吸虫病模型的长期动态,并探讨了平流、季节性和空间异质性对疾病传播的共同影响。我们推导出基本繁殖数({mathcal {R}}_0),并证明当({mathcal {R}}_0<1)时,无病周期解具有全局吸引力,而当({mathcal {R}}_0>1)时,存在正的流行周期解,并且在特殊情况下系统具有均匀持久性。此外,我们还发现({mathcal {R}}_0) 是平流系数的递减函数,这为我们了解为什么血吸虫病在水流缓慢的地区更为严重提供了启示。
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引用次数: 0
Dynamical analysis of a general delayed HBV infection model with capsids and adaptive immune response in presence of exposed infected hepatocytes 带有囊壳的一般延迟型 HBV 感染模型的动力学分析以及暴露感染肝细胞时的适应性免疫反应
IF 1.9 4区 数学 Q2 BIOLOGY Pub Date : 2024-04-30 DOI: 10.1007/s00285-024-02096-7
Severin Foko

The aim of this paper is to develop and investigate a novel mathematical model of the dynamical behaviors of chronic hepatitis B virus infection. The model includes exposed infected hepatocytes, intracellular HBV DNA-containing capsids, uses a general incidence function for viral infection covering a variety of special cases available in the literature, and describes the interaction of cytotoxic T lymphocytes that kill the infected hepatocytes and the magnitude of B-cells that send antibody immune defense to neutralize free virions. Further, one time delay is incorporated to account for actual capsids production. The other time delays are used to account for maturation of capsids and free viruses. We start with the analysis of the proposed model by establishing the local and global existence, uniqueness, non-negativity and boundedness of solutions. After defined the threshold parameters, we discuss the stability properties of all possible steady state constants by using the crafty Lyapunov functionals, the LaSalle’s invariance principle and linearization methods. The impacts of the three time delays on the HBV infection transmission are discussed through local and global sensitivity analysis of the basic reproduction number and of the classes of infected states. Finally, an application is provided and numerical simulations are performed to illustrate and interpret the theoretical results obtained. It is suggested that, a good strategy to eradicate or to control HBV infection within a host should concentrate on any drugs that may prolong the values of the three delays.

本文旨在开发和研究慢性乙型肝炎病毒感染动态行为的新型数学模型。该模型包括暴露的受感染肝细胞、细胞内含 HBV DNA 的囊体,使用了病毒感染的一般发生率函数,涵盖了文献中的各种特殊情况,并描述了杀死受感染肝细胞的细胞毒性 T 淋巴细胞和发出抗体免疫防御以中和游离病毒的 B 细胞的相互作用。此外,还加入了一个时间延迟,以考虑实际的囊壳产生。其他时间延迟用于计算囊壳和游离病毒的成熟。我们首先对提出的模型进行分析,确定解的局部和全局存在性、唯一性、非负性和有界性。在定义了阈值参数后,我们利用狡猾的 Lyapunov 函数、拉萨尔不变性原理和线性化方法讨论了所有可能稳态常数的稳定性。通过对基本繁殖数和感染状态类别的局部和全局敏感性分析,讨论了三种时间延迟对 HBV 感染传播的影响。最后,提供了一个应用实例,并进行了数值模拟,以说明和解释所获得的理论结果。研究建议,根除或控制宿主体内 HBV 感染的好策略应集中在任何可能延长三个延迟值的药物上。
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引用次数: 0
Transmission dynamics of a reaction–advection–diffusion dengue fever model with seasonal developmental durations and intrinsic incubation periods 具有季节性发育期和固有潜伏期的反应-平流-扩散登革热模型的传播动力学
IF 1.9 4区 数学 Q2 BIOLOGY Pub Date : 2024-04-29 DOI: 10.1007/s00285-024-02089-6
Yijie Zha, Weihua Jiang

In this paper, we propose a reaction–advection–diffusion dengue fever model with seasonal developmental durations and intrinsic incubation periods. Firstly, we establish the well-posedness of the model. Secondly, we define the basic reproduction number ( Re _{0} ) for this model and show that ( {Re _0} ) is a threshold parameter: if ( {Re _0} <1 ), then the disease-free periodic solution is globally attractive; if ( {Re _0}>1 ), the system is uniformly persistent. Thirdly, we study the global attractivity of the positive steady state when the spatial environment is homogeneous and the advection of mosquitoes is ignored. As an example, we use the model to investigate the dengue fever transmission case in Guangdong Province, China, and explore the impact of model parameters on ( Re _{0}). Our findings indicate that ignoring seasonality may underestimate (Re _0). Additionally, the spatial heterogeneity of transmission may increase the risk of disease transmission, while the increase of seasonal developmental durations, intrinsic incubation periods and advection rates can all reduce the risk of disease transmission.

在本文中,我们提出了一个具有季节性发展持续时间和内在潜伏期的反应-平流-扩散登革热模型。首先,我们建立了模型的拟合性。其次,我们定义了该模型的基本繁殖数( {Re _{0} ),并证明( {Re _0} )是一个阈值参数:如果( {Re _0} <1 ),则无病周期解具有全局吸引力;如果( {Re _0}>1 ),则系统具有均匀持久性。第三,我们研究了当空间环境均匀且忽略蚊子平流时,正稳态的全局吸引力。我们以中国广东省登革热传播为例,探讨了模型参数对 ( Re _{0})的影响。我们的研究结果表明,忽略季节性可能会低估 ( Re _{0})。此外,传播的空间异质性可能会增加疾病传播的风险,而增加季节性发育持续时间、内在潜伏期和平流率都可以降低疾病传播的风险。
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引用次数: 0
Modeling insect growth regulators for pest management 昆虫生长调节剂模型用于害虫管理
IF 1.9 4区 数学 Q2 BIOLOGY Pub Date : 2024-04-29 DOI: 10.1007/s00285-024-02091-y
Yijun Lou, Ruiwen Wu

Insect growth regulators (IGRs) have been developed as effective control measures against harmful insect pests to disrupt their normal development. This study is to propose a mathematical model to evaluate the cost-effectiveness of IGRs for pest management. The key features of the model include the temperature-dependent growth of insects and realistic impulsive IGRs releasing strategies. The impulsive releases are carefully modeled by counting the number of implements during an insect’s temperature-dependent development duration, which introduces a surviving probability determined by a product of terms corresponding to each release. Dynamical behavior of the model is illustrated through dynamical system analysis and a threshold-type result is established in terms of the net reproduction number. Further numerical simulations are performed to quantitatively evaluate the effectiveness of IGRs to control populations of harmful insect pests. It is interesting to observe that the time-changing environment plays an important role in determining an optimal pest control scheme with appropriate release frequencies and time instants.

昆虫生长调节剂(IGRs)是针对有害害虫的有效控制措施,可以破坏害虫的正常生长发育。本研究提出了一个数学模型,用于评估 IGRs 在害虫管理方面的成本效益。该模型的主要特点包括昆虫的生长与温度有关,以及逼真的脉冲式 IGRs 释放策略。通过计算昆虫在随温度变化的生长过程中的释放次数,对脉冲释放进行了仔细建模,从而引入了由每次释放相应项的乘积决定的存活概率。该模型的动态行为通过动态系统分析加以说明,并根据净繁殖数量确定了阈值型结果。通过进一步的数值模拟,对 IGRs 控制有害害虫种群的效果进行了定量评估。值得注意的是,在确定具有适当释放频率和释放时间的最佳害虫控制方案时,时间变化的环境起着重要作用。
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引用次数: 0
Wolbachia invasion dynamics of a random mosquito population model with imperfect maternal transmission and incomplete CI 具有不完全母体传播和不完全 CI 的随机蚊子种群模型的沃尔巴克氏体入侵动力学
IF 1.9 4区 数学 Q2 BIOLOGY Pub Date : 2024-04-28 DOI: 10.1007/s00285-024-02094-9
Hui Wan, Yin Wu, Guihong Fan, Dan Li

In this work, we formulate a random Wolbachia invasion model incorporating the effects of imperfect maternal transmission and incomplete cytoplasmic incompatibility (CI). Under constant environments, we obtain the following results: Firstly, the complete invasion equilibrium of Wolbachia does not exist, and thus the population replacement is not achievable in the case of imperfect maternal transmission; Secondly, imperfect maternal transmission or incomplete CI may obliterate bistability and backward bifurcation, which leads to the failure of Wolbachia invasion, no matter how many infected mosquitoes would be released; Thirdly, the threshold number of the infected mosquitoes to be released would increase with the decrease of the maternal transmission rate or the intensity of CI effect. In random environments, we investigate in detail the Wolbachia invasion dynamics of the random mosquito population model and establish the initial release threshold of infected mosquitoes for successful invasion of Wolbachia into the wild mosquito population. In particular, the existence and stability of invariant probability measures for the establishment and extinction of Wolbachia are determined.

在这项工作中,我们建立了一个随机沃尔巴克氏体入侵模型,其中包含了不完全母体传播和不完全细胞质不相容(CI)的影响。在恒定环境下,我们得到了以下结果:首先,沃尔巴克氏菌的完全入侵平衡并不存在,因此在不完全母源传播的情况下无法实现种群更替;第二,不完全母体传播或不完全CI可能导致双稳态和向后分叉,从而导致无论释放多少受感染蚊子,沃尔巴克氏菌入侵都会失败;第三,释放受感染蚊子的阈值数量会随着母体传播率或CI效应强度的降低而增加。在随机环境下,我们详细研究了随机蚊子种群模型的沃尔巴克氏体入侵动力学,并建立了沃尔巴克氏体成功入侵野生蚊子种群的初始感染蚊子释放阈值。特别是,我们确定了沃尔巴克氏菌建立和消亡的不变概率度量的存在性和稳定性。
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引用次数: 0
Local intraspecific aggregation in phytoplankton model communities: spatial scales of occurrence and implications for coexistence 浮游植物模式群落中的局部种内聚集:发生的空间尺度及其对共存的影响
IF 1.9 4区 数学 Q2 BIOLOGY Pub Date : 2024-04-25 DOI: 10.1007/s00285-024-02067-y
Coralie Picoche, William R. Young, Frédéric Barraquand

The coexistence of multiple phytoplankton species despite their reliance on similar resources is often explained with mean-field models assuming mixed populations. In reality, observations of phytoplankton indicate spatial aggregation at all scales, including at the scale of a few individuals. Local spatial aggregation can hinder competitive exclusion since individuals then interact mostly with other individuals of their own species, rather than competitors from different species. To evaluate how microscale spatial aggregation might explain phytoplankton diversity maintenance, an individual-based, multispecies representation of cells in a hydrodynamic environment is required. We formulate a three-dimensional and multispecies individual-based model of phytoplankton population dynamics at the Kolmogorov scale. The model is studied through both simulations and the derivation of spatial moment equations, in connection with point process theory. The spatial moment equations show a good match between theory and simulations. We parameterized the model based on phytoplankters’ ecological and physical characteristics, for both large and small phytoplankton. Defining a zone of potential interactions as the overlap between nutrient depletion volumes, we show that local species composition—within the range of possible interactions—depends on the size class of phytoplankton. In small phytoplankton, individuals remain in mostly monospecific clusters. Spatial structure therefore favours intra- over inter-specific interactions for small phytoplankton, contributing to coexistence. Large phytoplankton cell neighbourhoods appear more mixed. Although some small-scale self-organizing spatial structure remains and could influence coexistence mechanisms, other factors may need to be explored to explain diversity maintenance in large phytoplankton.

尽管浮游植物依赖相似的资源,但仍有多个物种共存,这通常可以用平均场模型来解释,即假定种群混合。实际上,对浮游植物的观察表明,在所有尺度上都存在空间聚集,包括在几个个体的尺度上。局部的空间聚集可能会阻碍竞争排斥,因为此时个体主要与同种的其他个体而不是不同物种的竞争者发生相互作用。为了评估微观尺度空间聚集如何解释浮游植物多样性的维持,需要在水动力环境中对细胞进行基于个体的多物种表征。我们建立了一个三维、基于多物种个体的科尔莫哥洛夫尺度浮游植物种群动力学模型。我们结合点过程理论,通过模拟和空间矩方程的推导对该模型进行了研究。空间矩方程显示出理论与模拟之间的良好匹配。我们根据大型和小型浮游植物的生态和物理特征对模型进行了参数化。我们将潜在的相互作用区域定义为营养耗竭量之间的重叠区域,结果表明,在可能的相互作用范围内,当地的物种组成取决于浮游植物的大小类别。在小型浮游植物中,个体大多保持在单一物种群中。因此,对于小型浮游植物来说,空间结构更有利于内部而非种间的相互作用,从而促进共存。大型浮游植物细胞邻域则显得更为混杂。虽然一些小规模的自组织空间结构仍然存在,并可能影响共存机制,但要解释大型浮游植物的多样性维持情况,可能还需要探索其他因素。
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引用次数: 0
Exploring data sources and mathematical approaches for estimating human mobility rates and implications for understanding COVID-19 dynamics: a systematic literature review 探索估算人类流动率的数据来源和数学方法及其对了解 COVID-19 动态的影响:系统文献综述
IF 1.9 4区 数学 Q2 BIOLOGY Pub Date : 2024-04-19 DOI: 10.1007/s00285-024-02082-z
Yogesh Bali, Vijay Pal Bajiya, Jai Prakash Tripathi, Anuj Mubayi

Human mobility, which refers to the movement of people from one location to another, is believed to be one of the key factors shaping the dynamics of the COVID-19 pandemic. There are multiple reasons that can change human mobility patterns, such as fear of an infection, control measures restricting movement, economic opportunities, political instability, etc. Human mobility rates are complex to estimate as they can occur on various time scales, depending on the context and factors driving the movement. For example, short-term movements are influenced by the daily work schedule, whereas long-term trends can be due to seasonal employment opportunities. The goal of the study is to perform literature review to: (i) identify relevant data sources that can be used to estimate human mobility rates at different time scales, (ii) understand the utilization of variety of data to measure human movement trends under different contexts of mobility changes, and (iii) unraveling the associations between human mobility rates and social determinants of health affecting COVID-19 disease dynamics. The systematic review of literature was carried out to collect relevant articles on human mobility. Our study highlights the use of three major sources of mobility data: public transit, mobile phones, and social surveys. The results also provides analysis of the data to estimate mobility metrics from the diverse data sources. All major factors which directly and indirectly influenced human mobility during the COVID-19 spread are explored. Our study recommends that (a) a significant balance between primitive and new estimated mobility parameters need to be maintained, (b) the accuracy and applicability of mobility data sources should be improved, (c) encouraging broader interdisciplinary collaboration in movement-based research is crucial for advancing the study of COVID-19 dynamics among scholars from various disciplines.

人员流动是指人员从一个地点到另一个地点的移动,据信这是影响 COVID-19 大流行动态的关键因素之一。有多种原因可以改变人口流动模式,如害怕感染、限制流动的控制措施、经济机会、政治不稳定等。人类流动率的估算非常复杂,因为它们可能发生在不同的时间尺度上,具体取决于环境和驱动流动的因素。例如,短期流动受日常工作安排的影响,而长期趋势则可能是由于季节性就业机会造成的。本研究的目标是进行文献综述,以便(i) 确定可用于估算不同时间尺度下人口流动率的相关数据来源,(ii) 了解在不同的流动变化背景下如何利用各种数据来衡量人口流动趋势,以及 (iii) 解读人口流动率与影响 COVID-19 疾病动态的健康社会决定因素之间的关联。我们对文献进行了系统回顾,以收集有关人类流动的相关文章。我们的研究强调了对公共交通、移动电话和社会调查这三大流动性数据来源的使用。研究结果还提供了数据分析,以估算不同数据源的流动性指标。研究探讨了 COVID-19 传播期间直接和间接影响人类流动性的所有主要因素。我们的研究建议:(a) 需要保持原始流动性参数和新估计流动性参数之间的重要平衡;(b) 应提高流动性数据源的准确性和适用性;(c) 鼓励在以流动性为基础的研究中开展更广泛的跨学科合作,对于推动不同学科学者之间的 COVID-19 动态研究至关重要。
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引用次数: 0
On hierarchical competition through reduction of individual growth 通过减少个人成长来实现等级竞争
IF 1.9 4区 数学 Q2 BIOLOGY Pub Date : 2024-04-19 DOI: 10.1007/s00285-024-02084-x
Carles Barril, Àngel Calsina, Odo Diekmann, József Z. Farkas

We consider a population organised hierarchically with respect to size in such a way that the growth rate of each individual depends only on the presence of larger individuals. As a concrete example one might think of a forest, in which the incidence of light on a tree (and hence how fast it grows) is affected by shading by taller trees. The classic formulation of a model for such a size-structured population employs a first order quasi-linear partial differential equation equipped with a non-local boundary condition. However, the model can also be formulated as a delay equation, more specifically a scalar renewal equation, for the population birth rate. After discussing the well-posedness of the delay formulation, we analyse how many stationary birth rates the equation can have in terms of the functional parameters of the model. In particular we show that, under reasonable and rather general assumptions, only one stationary birth rate can exist besides the trivial one (associated to the state in which there are no individuals and the population birth rate is zero). We give conditions for this non-trivial stationary birth rate to exist and analyse its stability using the principle of linearised stability for delay equations. Finally, we relate the results to the alternative, partial differential equation formulation of the model.

我们考虑的是一个按大小分级的种群,即每个个体的生长速度只取决于较大个体的存在。举个具体的例子,我们可以想象一下森林,在森林中,一棵树的光照入射率(以及它的生长速度)会受到高大树木遮挡的影响。这种大小结构的种群模型的经典公式是一个一阶准线性偏微分方程,并配有一个非局部边界条件。不过,该模型也可以表述为人口出生率的延迟方程,更确切地说,是标量更新方程。在讨论了延迟方程的好求解性之后,我们分析了根据模型的函数参数,该方程可以有多少个静态出生率。我们特别指出,在合理且相当一般的假设条件下,除了微不足道的出生率(与没有个体且人口出生率为零的状态相关)之外,只能存在一种静态出生率。我们给出了这种非三稳态出生率存在的条件,并利用延迟方程的线性化稳定性原理分析了它的稳定性。最后,我们将结果与该模型的另一种偏微分方程公式联系起来。
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引用次数: 0
Structural stability of invasion graphs for Lotka–Volterra systems 洛特卡-伏特拉系统入侵图的结构稳定性
IF 1.9 4区 数学 Q2 BIOLOGY Pub Date : 2024-04-17 DOI: 10.1007/s00285-024-02087-8
Pablo Almaraz, Piotr Kalita, José A. Langa, Fernando Soler–Toscano

In this paper, we study in detail the structure of the global attractor for the Lotka–Volterra system with a Volterra–Lyapunov stable structural matrix. We consider the invasion graph as recently introduced in Hofbauer and Schreiber (J Math Biol 85:54, 2022) and prove that its edges represent all the heteroclinic connections between the equilibria of the system. We also study the stability of this structure with respect to the perturbation of the problem parameters. This allows us to introduce a definition of structural stability in ecology in coherence with the classical mathematical concept where there exists a detailed geometrical structure, robust under perturbation, that governs the transient and asymptotic dynamics.

本文详细研究了具有 Volterra-Lyapunov 稳定结构矩阵的 Lotka-Volterra 系统的全局吸引子结构。我们考虑了最近在 Hofbauer 和 Schreiber (J Math Biol 85:54, 2022) 中引入的入侵图,并证明其边缘代表了系统平衡态之间的所有异质连接。我们还研究了这一结构在问题参数扰动方面的稳定性。这使我们能够引入生态学中结构稳定性的定义,使其与经典数学概念相一致,即存在一个详细的几何结构,在扰动下保持稳定,并支配着瞬态和渐近动态。
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引用次数: 0
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Journal of Mathematical Biology
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