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Direct observation of small molecule activator binding to single PR65 protein. 直接观察小分子激活剂与单个PR65蛋白的结合。
Pub Date : 2025-01-01 Epub Date: 2025-01-16 DOI: 10.1038/s44328-024-00018-7
Annie Yang-Schulz, Maria Zacharopoulou, Sema Zeynep Yilmaz, Anupam Banerjee, Satyaki Saha, Daniel Nietlispach, Michael Ohlmeyer, Mert Gur, Laura S Itzhaki, Ivet Bahar, Reuven Gordon

The reactivation of heterotrimeric protein phosphatase 2A (PP2A) through small molecule activators is of interest to therapeutic intervention due to its dysregulation, which is linked to chronic conditions. This study focuses on the PP2A scaffold subunit PR65 and a small molecule activator, ATUX-8385, designed to bind directly to this subunit. Using a label-free single-molecule approach with nanoaperture optical tweezers (NOT), we quantify its binding, obtaining a dissociation constant of 13.6 ± 2.5 μM, consistent with ensemble fluorescence anisotropy results but challenging to achieve with other methods due to low affinity. Single-molecule NOT measurements reveal that binding increases optical scattering, indicating PR65 elongation. This interpretation is supported by all-atom molecular dynamics simulations showing PR65 adopts more extended conformations upon binding. This work highlights NOT's utility in quantifying binding kinetics and structural impact, offering insights valuable for drug discovery.

异三聚体蛋白磷酸酶2A (PP2A)通过小分子激活剂的再激活是治疗干预的兴趣,因为它的失调与慢性疾病有关。本研究的重点是PP2A支架亚基PR65和设计用于直接结合该亚基的小分子激活剂ATUX-8385。利用纳米孔径光镊(NOT)的无标记单分子方法,我们量化了它的结合,得到了13.6±2.5 μM的解离常数,与集合荧光各向异性结果一致,但由于亲和力低,其他方法难以实现。单分子NOT测量表明,结合增加了光学散射,表明PR65伸长。这一解释得到了全原子分子动力学模拟的支持,显示PR65在结合时采用了更广泛的构象。这项工作突出了NOT在定量结合动力学和结构影响方面的效用,为药物发现提供了有价值的见解。
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引用次数: 0
A method for blood pressure hydrostatic pressure correction using wearable inertial sensors and deep learning.
Pub Date : 2025-01-01 Epub Date: 2025-01-31 DOI: 10.1038/s44328-024-00021-y
David A M Colburn, Terry L Chern, Vincent E Guo, Kennedy A Salamat, Daniel N Pugliese, Corey K Bradley, Daichi Shimbo, Samuel K Sia

Cuffless noninvasive blood pressure (BP) measurement could enable early unobtrusive detection of abnormal BP patterns, but when the sensor is placed on a location away from heart level (such as the arm), its accuracy is compromised by variations in the position of the sensor relative to heart level; such positional variations produce hydrostatic pressure changes that can cause swings in tens of mmHg in the measured BP if uncorrected. A standard method to correct for changes in hydrostatic pressure makes use of a bulky fluid-filled tube connecting heart level to the sensor. Here, we present an alternative method to correct for variations in hydrostatic pressure using unobtrusive wearable inertial sensors. This method, called IMU-Track, analyzes motion information with a deep learning model; for sensors placed on the arm, IMU-Track calculates parameterized arm-pose coordinates, which are then used to correct the measured BP. We demonstrated IMU-Track for BP measurements derived from pulse transit time, acquired using electrocardiography and finger photoplethysmography, with validation data collected across 20 participants. Across these participants, for the hand heights of 25 cm below or above the heart, mean absolute errors were reduced for systolic BP from 13.5 ± 1.1 and 9.6 ± 1.1 to 5.9 ± 0.7 and 5.9 ± 0.5 mmHg, respectively, and were reduced for diastolic BP from 15.0 ± 1.0 and 11.5 ± 1.5 to 6.8 ± 0.5 and 7.8 ± 0.8, respectively. On a commercial smartphone, the arm-tracking inference time was ~134 ms, sufficiently fast for real-time hydrostatic pressure correction. This method for correcting hydrostatic pressure may enable accurate passive cuffless BP monitors placed at positions away from heart level that accommodate everyday movements.

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引用次数: 0
Evaluation of electrical impedance spectroscopy of bovine eyes for early detection of uveal melanoma 牛眼电阻抗谱对葡萄膜黑色素瘤早期检测的评价
Pub Date : 2024-12-27 DOI: 10.1038/s44328-024-00022-x
Vaibhav B. Yadav, Enosh Lim, Alison H. Skalet, Mohammad J. Moghimi
Uveal melanoma is the most common primary intraocular cancer in adults and is an aggressive malignancy with risk to vision and survival. Early detection and timely management of tumors may help preserve vision and reduce mortality rate but is challenging as many tumors are asymptomatic until they become large. Here, we studied the electrical properties of eyes to investigate a novel method for potentially detecting small intraocular tumors. We used finite element analysis to simulate the impact of uveal melanoma tumors on electrical impedance and current density in eye models. We also measured the impedance and current flow in the presence of inserted tissue simulating an intraocular tumor in enucleated bovine eyes and eyes in bovine head ex vivo. Our results showed that a 5 mm-diameter mass was detected inside a 32-mm diameter bovine eye by the impedance analyzer.
葡萄膜黑色素瘤是成人最常见的原发性眼内癌,是一种侵袭性恶性肿瘤,具有视力和生存风险。肿瘤的早期发现和及时治疗可能有助于保护视力和降低死亡率,但由于许多肿瘤在变大之前是无症状的,因此具有挑战性。在这里,我们研究了眼睛的电学特性,以探索一种潜在检测小眼内肿瘤的新方法。我们使用有限元分析模拟了葡萄膜黑色素瘤对眼模型电阻抗和电流密度的影响。我们还测量了在去核牛眼和离体牛头眼中植入模拟眼内肿瘤的组织时的阻抗和电流。结果表明,阻抗分析仪在直径32 mm的牛眼内检测到直径5 mm的肿块。
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引用次数: 0
Fully automated sample to result SIMPLE RPA microfluidic chip towards in ovo sexing application 全自动化采样结果SIMPLE RPA微流控芯片在蛋类检测中的应用
Pub Date : 2024-12-26 DOI: 10.1038/s44328-024-00019-6
Simão Monteiro Belo dos Santos, Celine Wegsteen, Dries Vloemans, Matthias Corion, Bart De Ketelaere, Dragana Spasic, Jeroen Lammertyn
Several European countries have implemented legislations to eliminate day-old male chicks killing. Although embryo sexing (in ovo sexing) is the most promising alternative, no current solution can handle all egg colors with >98% sexing accuracy, low cost and minimal embryo disturbance before day 13 of incubation and processing >20,000 eggs/hour. Recombinase polymerase amplification (RPA) presents a promising alternative to PCR that can be integrated into microfluidic platforms. In this work, we developed fully autonomous microfluidic cartridge (SIMPLE-RPA chip) for female chick-specific synthetic HINTW gene detection in 30 min at 37.7 °C inside an egg incubator. We first optimized off-chip RPA, allowing for highly sensitive DNA detection (1.6 × 10–5 ng/µL). The SIMPLE-RPA chip was developed to automate the RPA bioassay on-chip, reducing user errors, and contamination risks and maintaining the off-chip LOD while offering low price, small footprint, upscaling compatibility, and easy transfer to other point-of-care applications.
几个欧洲国家已经实施了立法,以消除对日龄雄鸡的捕杀。虽然胚胎性别测定(在卵子性别测定中)是最有前途的替代方法,但目前还没有一种方法可以在孵化和加工第13天(每小时2万个鸡蛋)之前以98%的性别测定准确率、低成本和最小的胚胎干扰来处理所有的鸡蛋颜色。重组酶聚合酶扩增(RPA)提出了一个有前途的替代PCR,可以集成到微流控平台。在这项工作中,我们开发了完全自主的微流控盒(简单- rpa芯片),用于在37.7°C的孵卵器中30分钟内检测雌性鸡特异性合成HINTW基因。我们首先优化了片外RPA,允许高灵敏度的DNA检测(1.6 × 10-5 ng/µL)。SIMPLE-RPA芯片的开发是为了实现片上RPA生物测定的自动化,减少用户错误和污染风险,并保持片外LOD,同时提供低价格,占地面积小,升级兼容性,易于转移到其他护理点应用。
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引用次数: 0
Advancements of paper-based sensors for antibiotic-resistant bacterial species identification 纸张传感器在耐药细菌种类鉴定中的应用进展
Pub Date : 2024-12-13 DOI: 10.1038/s44328-024-00016-9
Aayushi Laliwala, Ashruti Pant, Denis Svechkarev, Marat R. Sadykov, Aaron M. Mohs
Evolution of antimicrobial-resistant bacterial species is on a rise. This review aims to explore the diverse range of paper-based platforms designed to identify antimicrobial-resistant bacterial species. It highlights the most important targets used for sensor development and examines the applications of nanosized particles used in paper-based sensors. This review also discusses the advantages, limitations, and applicability of various targets and detection techniques for sensing drug-resistant bacterial species using paper-based platforms.
抗微生物细菌物种的进化正在上升。本综述旨在探讨旨在鉴定抗微生物耐药细菌种类的各种纸质平台。它强调了传感器发展中最重要的目标,并研究了纳米颗粒在纸基传感器中的应用。本文还讨论了利用纸质平台检测耐药细菌种类的各种靶点和检测技术的优点、局限性和适用性。
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引用次数: 0
A quantitative, label-free visual interference colour assay platform for protein targeting and binding assays 一个定量的,无标签的视觉干扰颜色分析平台,用于蛋白质靶向和结合分析
Pub Date : 2024-12-05 DOI: 10.1038/s44328-024-00017-8
Ana Lopez-Campistrous, Hillary Sweet, Ciaran Terry, Craig Garen, Yu Wan, Robert E. Burrell, Kyle Moxham, Matthew Nickel, Michael Serpe, Michael Joyce, Lorne Tyrrell, Todd P. W. McMullen
The vast array of immunoassay technologies used to assess protein interactions is costly or platform-specific. We present a label-free visual interference colour assay (VICA) that quantifies peptide and protein interactions by creating an iridescent surface allowing direct visualisation without spectrophotometric optics or microfluidics. A nanoporous aluminium oxide surface is tuned to match the refractive indices of the overlying protein layers to generate visual interference colours. To functionalise the surface, we created an affinity-capture system using a protein A-carboxyglutamic (GLA) construct that orients antibodies to enhance the signal. Using off-the-shelf antibodies, the platform can isolate analytes in buffer, whole blood, or serum. This surface generates a discernible colour change at concentrations as low as 50 femtomoles/mm2 and can monitor oligomer formation in sequential steps on the same slide. VICA provides comparable kinetic parameters to biolayer interferometry and traditional immunoassays while also allowing characterisation of proteins in large macromolecular complexes.
用于评估蛋白质相互作用的大量免疫分析技术是昂贵的或平台特异性的。我们提出了一种无标记的视觉干扰颜色测定(VICA),通过创建一个彩虹色表面来量化肽和蛋白质的相互作用,允许在没有分光光度计光学或微流体的情况下直接可视化。纳米多孔氧化铝表面被调整为与上覆蛋白质层的折射率相匹配,从而产生视觉干扰色。为了使表面功能化,我们使用蛋白a -羧谷氨酸(GLA)构建了一个亲和力捕获系统,该系统可以定向抗体以增强信号。使用现成的抗体,该平台可以在缓冲液、全血或血清中分离分析物。这种表面在浓度低至50飞摩尔/平方毫米时产生可识别的颜色变化,并且可以在同一载玻片上连续步骤监测低聚物的形成。VICA提供了与生物层干涉法和传统免疫测定法相当的动力学参数,同时也允许表征大型大分子复合物中的蛋白质。
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引用次数: 0
Photovoltaic bioelectronics merging biology with new generation semiconductors and light in biophotovoltaics photobiomodulation and biosensing 光电生物电子学将生物学与新一代半导体和生物光电学中的光融合在一起 光生物调制和生物传感
Pub Date : 2024-11-21 DOI: 10.1038/s44328-024-00015-w
Ebin Joseph, Manuela Ciocca, Haodong Wu, Serena Marcozzi, Maria Assunta Ucci, Kavya Keremane, Luyao Zheng, Bed Poudel, Congcong Wu, Antonella Camaioni, Kai Wang, Shashank Priya, Thomas M. Brown
This review covers advancements in biosensing, biophotovoltaics, and photobiomodulation, focusing on the synergistic use of light, biomaterials, cells or tissues, interfaced with photosensitive dye-sensitized, perovskite, and conjugated polymer organic semiconductors or nanoparticles. Integration of semiconductor and biological systems, using non-invasive light-probes or -stimuli for both sensing and controlling biological behavior, has led to groundbreaking applications like artificial retinas. From fusion of photovoltaics and biology, a new research field emerges: photovoltaic bioelectronics.
这篇综述涵盖了生物传感、生物光电和光生物调制方面的进展,侧重于光、生物材料、细胞或组织与光敏染料敏化、过氧化物和共轭聚合物有机半导体或纳米粒子的协同使用。半导体与生物系统的结合,利用非侵入性光探针或刺激物来感知和控制生物行为,已导致人工视网膜等突破性应用的出现。光电与生物的融合产生了一个新的研究领域:光电生物电子学。
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引用次数: 0
Energy landscape of conformational changes for a single unmodified protein 单一未修饰蛋白质构象变化的能量图谱
Pub Date : 2024-11-06 DOI: 10.1038/s44328-024-00014-x
Matthew Peters, Tianyu Zhao, Sherin George, Viet Giang Truong, Síle Nic Chormaic, Cuifeng Ying, René A. Nome, Reuven Gordon
Resolving the free energy landscapes that govern protein biophysics has been obscured by ensemble averaging. While the folding dynamics of single proteins have been observed using fluorescent labels and/or tethers, a simpler and more direct measurement of the conformational changes would not require modifications to the protein. We use nanoaperture optical tweezers to resolve the energy landscape of a single unmodified protein, Bovine Serum Albumin (BSA), and quantify changes in the three-state conformation dynamics with temperature. A Markov model with Kramers’ theory transition rates is used to model the dynamics, showing good agreement with the observed state transitions. This first look at the intrinsic energy landscape of proteins provides a transformative tool for protein biophysics and may be applied broadly, including mapping out the energy landscape of particularly challenging intrinsically disordered proteins.
解析支配蛋白质生物物理学的自由能景观一直被集合平均法所掩盖。虽然已经使用荧光标签和/或系链观测到了单个蛋白质的折叠动力学,但更简单、更直接的构象变化测量不需要对蛋白质进行修饰。我们使用纳米孔径光学镊子解析了单一未修饰蛋白质牛血清白蛋白(BSA)的能谱,并量化了三态构象动态随温度的变化。该动态模型采用了具有克拉默理论转换率的马尔可夫模型,与观察到的状态转换显示出良好的一致性。这种对蛋白质内在能量图谱的首次观察为蛋白质生物物理学提供了一种变革性工具,并可广泛应用于包括绘制特别具有挑战性的内在无序蛋白质的能量图谱。
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引用次数: 0
Recent advances in solid-liquid triboelectric nanogenerators for self-powered chemical and biological sensing 用于自供电化学和生物传感的固液三电纳米发电机的最新进展
Pub Date : 2024-10-04 DOI: 10.1038/s44328-024-00011-0
Kuldeep Kaswan, Meenakshi Ray, Arshad Khan, Yu-Lin Wang, Zong-Hong Lin
Solid-liquid triboelectric nanogenerators (SL-TENGs) exhibit significant potential in energy harvesting and sensing. This review explores SL-TENG development, focusing on chemical sensing and biosensing applications. Initially, the working mechanisms of various SL-TENG modes are described. Subsequently, an analysis of surface modifications of contact surfaces and liquids to functionalize chemical sensing and biosensing is explored, including their impact on surface properties and the corresponding effect on device performance related to sensing applications.
固液三电纳米发电机(SL-TENGs)在能量收集和传感方面具有巨大潜力。本综述探讨了 SL-TENG 的发展,重点是化学传感和生物传感应用。首先介绍了各种 SL-TENG 模式的工作机制。随后,探讨了对接触表面和液体进行表面改性以实现化学传感和生物传感功能化的分析,包括其对表面特性的影响以及对传感应用相关设备性能的相应影响。
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引用次数: 0
EEG-based headset sleep wearable devices 基于脑电图的头戴式睡眠可穿戴设备
Pub Date : 2024-10-01 DOI: 10.1038/s44328-024-00013-y
Karmen Markov, Mohamed Elgendi, Carlo Menon
The rise of wearable technology has led to EEG-based sleep monitoring devices that use electrodes placed on the forehead, ear, or neck. These devices offer promising applications in clinical and healthy populations by comparing sleep patterns, monitoring intervention responses, and examining the relationship between sleep and lifestyle factors. Despite their potential, challenges like validation against polysomnography, regulatory hurdles, data privacy, and usability hinder clinical adoption. This review explores these devices, their applications, and integration challenges in clinical practice.
可穿戴技术的兴起催生了基于脑电图的睡眠监测设备,这些设备使用放置在前额、耳朵或颈部的电极。通过比较睡眠模式、监测干预反应以及研究睡眠与生活方式因素之间的关系,这些设备在临床和健康人群中的应用前景广阔。尽管这些设备很有潜力,但与多导睡眠图的验证、监管障碍、数据隐私和可用性等挑战阻碍了它们在临床上的应用。本综述将探讨这些设备及其应用,以及在临床实践中的整合挑战。
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引用次数: 0
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npj Biosensing
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