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Advancements of paper-based sensors for antibiotic-resistant bacterial species identification
Pub Date : 2024-12-13 DOI: 10.1038/s44328-024-00016-9
Aayushi Laliwala, Ashruti Pant, Denis Svechkarev, Marat R. Sadykov, Aaron M. Mohs
Evolution of antimicrobial-resistant bacterial species is on a rise. This review aims to explore the diverse range of paper-based platforms designed to identify antimicrobial-resistant bacterial species. It highlights the most important targets used for sensor development and examines the applications of nanosized particles used in paper-based sensors. This review also discusses the advantages, limitations, and applicability of various targets and detection techniques for sensing drug-resistant bacterial species using paper-based platforms.
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引用次数: 0
A quantitative, label-free visual interference colour assay platform for protein targeting and binding assays
Pub Date : 2024-12-05 DOI: 10.1038/s44328-024-00017-8
Ana Lopez-Campistrous, Hillary Sweet, Ciaran Terry, Craig Garen, Yu Wan, Robert E. Burrell, Kyle Moxham, Matthew Nickel, Michael Serpe, Michael Joyce, Lorne Tyrrell, Todd P. W. McMullen
The vast array of immunoassay technologies used to assess protein interactions is costly or platform-specific. We present a label-free visual interference colour assay (VICA) that quantifies peptide and protein interactions by creating an iridescent surface allowing direct visualisation without spectrophotometric optics or microfluidics. A nanoporous aluminium oxide surface is tuned to match the refractive indices of the overlying protein layers to generate visual interference colours. To functionalise the surface, we created an affinity-capture system using a protein A-carboxyglutamic (GLA) construct that orients antibodies to enhance the signal. Using off-the-shelf antibodies, the platform can isolate analytes in buffer, whole blood, or serum. This surface generates a discernible colour change at concentrations as low as 50 femtomoles/mm2 and can monitor oligomer formation in sequential steps on the same slide. VICA provides comparable kinetic parameters to biolayer interferometry and traditional immunoassays while also allowing characterisation of proteins in large macromolecular complexes.
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引用次数: 0
Photovoltaic bioelectronics merging biology with new generation semiconductors and light in biophotovoltaics photobiomodulation and biosensing 光电生物电子学将生物学与新一代半导体和生物光电学中的光融合在一起 光生物调制和生物传感
Pub Date : 2024-11-21 DOI: 10.1038/s44328-024-00015-w
Ebin Joseph, Manuela Ciocca, Haodong Wu, Serena Marcozzi, Maria Assunta Ucci, Kavya Keremane, Luyao Zheng, Bed Poudel, Congcong Wu, Antonella Camaioni, Kai Wang, Shashank Priya, Thomas M. Brown
This review covers advancements in biosensing, biophotovoltaics, and photobiomodulation, focusing on the synergistic use of light, biomaterials, cells or tissues, interfaced with photosensitive dye-sensitized, perovskite, and conjugated polymer organic semiconductors or nanoparticles. Integration of semiconductor and biological systems, using non-invasive light-probes or -stimuli for both sensing and controlling biological behavior, has led to groundbreaking applications like artificial retinas. From fusion of photovoltaics and biology, a new research field emerges: photovoltaic bioelectronics.
这篇综述涵盖了生物传感、生物光电和光生物调制方面的进展,侧重于光、生物材料、细胞或组织与光敏染料敏化、过氧化物和共轭聚合物有机半导体或纳米粒子的协同使用。半导体与生物系统的结合,利用非侵入性光探针或刺激物来感知和控制生物行为,已导致人工视网膜等突破性应用的出现。光电与生物的融合产生了一个新的研究领域:光电生物电子学。
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引用次数: 0
Energy landscape of conformational changes for a single unmodified protein 单一未修饰蛋白质构象变化的能量图谱
Pub Date : 2024-11-06 DOI: 10.1038/s44328-024-00014-x
Matthew Peters, Tianyu Zhao, Sherin George, Viet Giang Truong, Síle Nic Chormaic, Cuifeng Ying, René A. Nome, Reuven Gordon
Resolving the free energy landscapes that govern protein biophysics has been obscured by ensemble averaging. While the folding dynamics of single proteins have been observed using fluorescent labels and/or tethers, a simpler and more direct measurement of the conformational changes would not require modifications to the protein. We use nanoaperture optical tweezers to resolve the energy landscape of a single unmodified protein, Bovine Serum Albumin (BSA), and quantify changes in the three-state conformation dynamics with temperature. A Markov model with Kramers’ theory transition rates is used to model the dynamics, showing good agreement with the observed state transitions. This first look at the intrinsic energy landscape of proteins provides a transformative tool for protein biophysics and may be applied broadly, including mapping out the energy landscape of particularly challenging intrinsically disordered proteins.
解析支配蛋白质生物物理学的自由能景观一直被集合平均法所掩盖。虽然已经使用荧光标签和/或系链观测到了单个蛋白质的折叠动力学,但更简单、更直接的构象变化测量不需要对蛋白质进行修饰。我们使用纳米孔径光学镊子解析了单一未修饰蛋白质牛血清白蛋白(BSA)的能谱,并量化了三态构象动态随温度的变化。该动态模型采用了具有克拉默理论转换率的马尔可夫模型,与观察到的状态转换显示出良好的一致性。这种对蛋白质内在能量图谱的首次观察为蛋白质生物物理学提供了一种变革性工具,并可广泛应用于包括绘制特别具有挑战性的内在无序蛋白质的能量图谱。
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引用次数: 0
Recent advances in solid-liquid triboelectric nanogenerators for self-powered chemical and biological sensing 用于自供电化学和生物传感的固液三电纳米发电机的最新进展
Pub Date : 2024-10-04 DOI: 10.1038/s44328-024-00011-0
Kuldeep Kaswan, Meenakshi Ray, Arshad Khan, Yu-Lin Wang, Zong-Hong Lin
Solid-liquid triboelectric nanogenerators (SL-TENGs) exhibit significant potential in energy harvesting and sensing. This review explores SL-TENG development, focusing on chemical sensing and biosensing applications. Initially, the working mechanisms of various SL-TENG modes are described. Subsequently, an analysis of surface modifications of contact surfaces and liquids to functionalize chemical sensing and biosensing is explored, including their impact on surface properties and the corresponding effect on device performance related to sensing applications.
固液三电纳米发电机(SL-TENGs)在能量收集和传感方面具有巨大潜力。本综述探讨了 SL-TENG 的发展,重点是化学传感和生物传感应用。首先介绍了各种 SL-TENG 模式的工作机制。随后,探讨了对接触表面和液体进行表面改性以实现化学传感和生物传感功能化的分析,包括其对表面特性的影响以及对传感应用相关设备性能的相应影响。
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引用次数: 0
EEG-based headset sleep wearable devices 基于脑电图的头戴式睡眠可穿戴设备
Pub Date : 2024-10-01 DOI: 10.1038/s44328-024-00013-y
Karmen Markov, Mohamed Elgendi, Carlo Menon
The rise of wearable technology has led to EEG-based sleep monitoring devices that use electrodes placed on the forehead, ear, or neck. These devices offer promising applications in clinical and healthy populations by comparing sleep patterns, monitoring intervention responses, and examining the relationship between sleep and lifestyle factors. Despite their potential, challenges like validation against polysomnography, regulatory hurdles, data privacy, and usability hinder clinical adoption. This review explores these devices, their applications, and integration challenges in clinical practice.
可穿戴技术的兴起催生了基于脑电图的睡眠监测设备,这些设备使用放置在前额、耳朵或颈部的电极。通过比较睡眠模式、监测干预反应以及研究睡眠与生活方式因素之间的关系,这些设备在临床和健康人群中的应用前景广阔。尽管这些设备很有潜力,但与多导睡眠图的验证、监管障碍、数据隐私和可用性等挑战阻碍了它们在临床上的应用。本综述将探讨这些设备及其应用,以及在临床实践中的整合挑战。
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引用次数: 0
Label-free functional imaging of vagus nerve stimulation-evoked potentials at the cortical surface 皮层表面迷走神经刺激诱发电位的无标记功能成像
Pub Date : 2024-09-10 DOI: 10.1038/s44328-024-00012-z
Laura RoaFiore, Trevor Meyer, Thaissa Peixoto, Pedro Irazoqui
Vagus nerve stimulation (VNS) is an FDA-approved stimulation therapy to treat patients with refractory epilepsy. In this work, we use a coherent holographic imaging system to characterize vagus nerve-evoked potentials (VEPs) in the cortex in response to VNS stimulation paradigms without electrode placement or any genetic, structural, or functional labels. We analyze stimulation amplitude up to saturation, pulse width up to 800 μs, and frequency from 10 Hz to 30 Hz, finding that stimulation amplitude strongly modulates VEPs response magnitude (effect size 0.401), while pulse width has a moderate modulatory effect (effect size 0.127) and frequency has almost no modulatory effect (effect size 0.009) on the evoked potential magnitude. We find mild interactions between pulse width and frequency. This non-contact label-free functional imaging technique may serve as a non-invasive rapid-feedback tool to characterize VEPs and may increase the efficacy of VNS in patients with refractory epilepsy.
迷走神经刺激(VNS)是美国食品与药物管理局(FDA)批准的一种刺激疗法,用于治疗难治性癫痫患者。在这项工作中,我们使用相干全息成像系统来描述大脑皮层中迷走神经诱发电位(VEP)对 VNS 刺激范式的反应,而无需放置电极或任何遗传、结构或功能标签。我们分析了高达饱和的刺激幅度、高达 800 μs 的脉冲宽度以及从 10 Hz 到 30 Hz 的频率,发现刺激幅度对 VEPs 反应幅度有强烈的调节作用(效应大小为 0.401),而脉冲宽度对诱发电位幅度有适度的调节作用(效应大小为 0.127),频率几乎没有调节作用(效应大小为 0.009)。我们发现脉冲宽度和频率之间存在轻微的相互作用。这种非接触式无标记功能成像技术可作为一种无创快速反馈工具来描述 VEPs,并可提高 VNS 对难治性癫痫患者的疗效。
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引用次数: 0
Towards early diagnosis and screening of Alzheimer’s disease using frequency locked whispering gallery mode microtoroids 利用频率锁定的耳语廊模式微透镜实现阿尔茨海默病的早期诊断和筛查
Pub Date : 2024-08-28 DOI: 10.1038/s44328-024-00009-8
Adley Gin, Phuong-Diem Nguyen, Geidy Serrano, Gene E. Alexander, Judith Su
Alzheimer’s disease (AD) is a form of dementia marked by amyloid plaques and neurofibrillary tangles in the brain. Amyloid beta (Aβ) is an AD biomarker which is linked to these plaques and tangles. Measuring Aβ levels can help with early AD diagnosis and aid in drug studies and delaying dementia. This is challenging, however, due to low AD biomarker levels in biofluids. Here we use FLOWER (frequency-locked optical whispering evanescent resonator) to quantify levels of post-mortem cerebrospinal fluid (CSF) Aβ42 in control, mild cognitive impairment (MCI), and AD participants. FLOWER measures the resonant wavelength shift of a microtoroid due to changes in the refractive index within its evanescent field. FLOWER can measure CSF Aβ42 (area under curve, AUC = 0.92) with higher performance than ELISA (AUC = 0.82) and can distinguish between control and MCI samples. This demonstrates FLOWER’s ability to screen CSF samples for diagnosis of AD.
阿尔茨海默病(AD)是一种以大脑中的淀粉样蛋白斑块和神经纤维缠结为特征的痴呆症。淀粉样蛋白β(Aβ)是一种与这些斑块和缠结有关的阿兹海默病生物标志物。测量 Aβ 的水平有助于早期诊断痴呆症,并有助于药物研究和延缓痴呆症的发生。然而,由于生物流体中的AD生物标记物水平较低,这项工作具有挑战性。在这里,我们使用 FLOWER(频率锁定光学耳语式蒸发共振器)来量化对照组、轻度认知障碍(MCI)组和注意力缺失(AD)组患者死后脑脊液(CSF)中 Aβ42 的水平。FLOWER 可测量微陀螺仪因其蒸发场内折射率变化而产生的共振波长偏移。FLOWER 能测量 CSF Aβ42(曲线下面积,AUC = 0.92),其性能高于 ELISA(AUC = 0.82),并能区分对照组和 MCI 样品。这证明了 FLOWER 能够筛查 CSF 样品以诊断 AD。
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引用次数: 0
Realtime bacteria detection and analysis in sterile liquid products using deep learning holographic imaging 利用深度学习全息成像技术实时检测和分析无菌液体产品中的细菌
Pub Date : 2024-08-23 DOI: 10.1038/s44328-024-00008-9
Nicholas Bravo-Frank, Rushikesh Zende, Lei Feng, Nicolas Mesyngier, Aditya Pachpute, Jiarong Hong
We introduce a digital inline holography (DIH) method combined with deep learning (DL) for real-time detection and analysis of bacteria in liquid suspension. Specifically, we designed a prototype that integrates DIH with fluorescence imaging to efficiently capture holograms of bacteria flowing in a microfluidic channel, utilizing the fluorescent signal to manually identify ground truths for validation. We process holograms using a tailored DL framework that includes preprocessing, detection, and classification stages involving three specific DL models trained on an extensive dataset that included holograms of generic particles present in sterile liquid and five bacterial species featuring distinct morphologies, Gram stain attributes, and viability. Our approach, validated through experiments with synthetic data and sterile liquid spiked with different bacteria, accurately distinguishes between bacteria and particles, live and dead bacteria, and Gram-positive and negative bacteria of similar morphology, all while minimizing false positives. The study highlights the potential of combining DIH with DL as a transformative tool for rapid bacterial analysis in clinical and industrial settings, with potential extension to other applications including pharmaceutical screening, environmental monitoring, and disease diagnostics.
我们介绍了一种结合深度学习(DL)的数字在线全息(DIH)方法,用于实时检测和分析液体悬浮液中的细菌。具体来说,我们设计了一种原型,将 DIH 与荧光成像集成在一起,高效捕捉微流控通道中流动的细菌全息图,利用荧光信号手动识别地面真相进行验证。我们使用定制的 DL 框架处理全息图,该框架包括预处理、检测和分类阶段,涉及在广泛数据集上训练的三个特定 DL 模型,这些数据集包括无菌液体中一般颗粒的全息图,以及具有不同形态、革兰氏染色属性和活力的五种细菌的全息图。通过对合成数据和添加了不同细菌的无菌液体进行实验验证,我们的方法能准确区分细菌和颗粒、活菌和死菌以及形态相似的革兰氏阳性和阴性细菌,同时最大限度地减少误报。这项研究强调了将 DIH 与 DL 结合起来作为临床和工业环境中快速细菌分析的变革性工具的潜力,并有可能扩展到其他应用领域,包括药物筛选、环境监测和疾病诊断。
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引用次数: 0
Functionalization of PEDOT:PSS for aptamer-based sensing of IL6 using organic electrochemical transistors 利用有机电化学晶体管对 PEDOT:PSS 进行功能化,以实现基于适配体的 IL6 检测
Pub Date : 2024-07-24 DOI: 10.1038/s44328-024-00007-w
Bernhard Burtscher, Chiara Diacci, Anatolii Makhinia, Marios Savvakis, Erik O. Gabrielsson, Lothar Veith, Xianjie Liu, Xenofon Strakosas, Daniel T. Simon
Here we propose a strategy to functionalize poly(ethylenedioxythiophene)-poly(styrenesulfonate) (PEDOT:PSS) based organic electrochemical transistors (OECTs) for sensing the inflammatory cytokine interleukin 6 (IL6). For this aim we use diazonium chemistry to couple 4-aminobenzoic acid to sulfonate moieties on the PSS, which can act as anchors for aptamers or other recognition elements (e.g., fluorescent, or redox probes). We investigated this approach with a commercial screen-printable PEDOT:PSS formulation but also studied the effect of PEDOT to PSS ratio as well as the amount of crosslinker in other PEDOT:PSS formulations. For screen printed OECTs, it was possible to distinguish between IL6 and bovine serum albumin (BSA) in buffer solution and detect IL6 when added in bovine plasma in the nanomolar range. Furthermore, functionalization of PEDOT:PSS formulations with higher PSS content (compared to the “standard” solutions used for OECTs) combined with frequency dependent measurements showed the potential to detect IL6 concentrations below 100 pM.
在此,我们提出了一种基于聚(乙烯二氧噻吩)-聚(苯乙烯磺酸)(PEDOT:PSS)的有机电化学晶体管(OECTs)的功能化策略,用于感测炎症细胞因子白细胞介素 6(IL6)。为此,我们使用重氮化学方法将 4-aminobenzoic acid 与 PSS 上的磺酸盐分子耦合,后者可作为适配体或其他识别元素(如荧光或氧化还原探针)的锚。我们使用商业丝网印刷 PEDOT:PSS 配方研究了这种方法,同时还研究了 PEDOT 与 PSS 的比例以及其他 PEDOT:PSS 配方中交联剂用量的影响。对于丝网印刷的 OECTs,可以区分缓冲溶液中的 IL6 和牛血清白蛋白 (BSA),并能在牛血浆中检测出纳摩尔范围内的 IL6。此外,与 OECTs 使用的 "标准 "溶液相比,PEDOT:PSS 含量更高的 PEDOT:PSS 配方的功能化与频率相关测量相结合,显示出检测低于 100 pM 的 IL6 浓度的潜力。
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引用次数: 0
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npj Biosensing
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