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Parity-specific differences in spatial genetics and dispersal in the common lizard. 普通蜥蜴在空间遗传学和扩散方面的雌雄差异。
IF 2.1 3区 生物学 Q3 ECOLOGY Pub Date : 2024-10-21 DOI: 10.1093/jeb/voae133
Darren C Hunter, Jean Clobert, Kathryn R Elmer

Dispersal is a key demographic parameter that plays an important role in determining spatial population dynamic and genetic structure. Linking differences in dispersal patterns to key life-history traits is often confounded by inconsistent environmental pressures experienced by different populations. To explore the link between dispersal and life history, we focus on a site where oviparous and viviparous lineages of the common lizard (Zootoca vivipara) are found adjacent to each other. We take advantage of this shared environment to investigate parity-specific dispersal patterns using high resolution, individual-level spatial genetic autocorrelation and population genomic approaches (11,726 SNPs; 293 oviparous and 310 viviparous individuals). We found isolation-by-distance patterns to be present in both the oviparous and viviparous populations. Density was 2.5 times higher in the viviparous population than the oviparous one, though heterozygosity and genetic diversity measures were similar in the two populations. We found marked differences in the extent of genetic neighbourhoods between the lineages, with the viviparous population showing both dispersal (σ) and spatial genetic autocorrelation (Moran's I) at two-fold greater geographic distances than the oviparous population. We found clear evidence of male-biased dispersal from genetic estimates in the viviparous population. In the oviparous population, evidence of male-biased dispersal is weak or absent. These differences are likely to be closely linked to specific requirements of the alternative reproductive strategies and may be the demographic consequences of mother-offspring interactions. Fine-scale geographic and individual-level measures are key to understanding parity mode differences at microevolutionary scales and to better identifying their ecological and evolutionary impacts.

散布是一个关键的人口参数,在决定空间种群动态和遗传结构方面发挥着重要作用。将散布模式的差异与关键的生活史特征联系起来,往往会受到不同种群所经历的环境压力不一致的影响。为了探索散布与生活史之间的联系,我们重点研究了普通蜥蜴(Zootoca vivipara)卵生和胎生品系相邻的一个地点。我们利用这一共同的环境,采用高分辨率、个体水平的空间遗传自相关性和种群基因组学方法(11,726 个 SNPs;293 个卵生个体和 310 个胎生个体),研究了奇数种特有的扩散模式。我们发现,卵胎生和胎生种群都存在按距离隔离的模式。胎生种群的密度是卵生种群的2.5倍,但两个种群的杂合度和遗传多样性测量结果相似。我们发现两个种群之间的遗传邻域范围存在明显差异,胎生种群的扩散(σ)和空间遗传自相关性(Moran's I)的地理距离是卵生种群的两倍。我们从胎生种群的遗传估计中发现了雄性偏向散布的明显证据。而在卵生种群中,雄性偏向散布的证据较弱或不存在。这些差异很可能与不同繁殖策略的具体要求密切相关,也可能是母子相互作用的人口学后果。精细的地理和个体水平测量是理解微进化尺度上奇偶模式差异的关键,也是更好地确定其生态和进化影响的关键。
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引用次数: 0
Correction to: Plasticity and genetic effects contribute to different axes of neural divergence in a community of mimetic Heliconius butterflies. Correction to:可塑性和遗传效应导致拟态蝶群落中不同的神经分化轴。
IF 2.1 3区 生物学 Q3 ECOLOGY Pub Date : 2024-10-16 DOI: 10.1093/jeb/voae129
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引用次数: 0
Variation in thermal courtship activity curves across individuals exceeds variation across populations and sexes. 个体间热求偶活动曲线的差异超过了种群和性别间的差异。
IF 2.1 3区 生物学 Q3 ECOLOGY Pub Date : 2024-10-11 DOI: 10.1093/jeb/voae130
Kasey D Fowler-Finn, Shivika Ahuja, Jake Hercules, Dowen Jocson, Em Miller, Daniel Sasson

The dynamics of mating interactions can vary in response to a wide variety of environmental factors. Here, we investigate the potential for individuals to vary consistently in the environmental conditions under which they actively engage in courtship. Specifically, we quantify variation in how courtship activity changes with environmental temperature across levels of biological organization in Enchenopa binotata treehoppers. Male E. binotata produce vibrational courtship signals and receptive females respond with their own sex-specific vibrational courtship signal. We tested each individual twice for the production of courtship signals across a range of ecologically-relevant temperatures (18 - 36 °C). Then, we measured repeatability and variability in the resulting thermal courtship activity curves, including the temperature of peak activity and tolerance to thermal extremes. We also looked at patterns of variation across populations and sexes. We found minimal variation across populations, but significant variation across individuals. Specifically, we found prevalent repeatability in how thermally generalized or specialized individuals are. However, repeatability was limited to females only. We also found higher variability in female traits than in male traits, although patterns of variability did not always predict patterns of repeatability. These results suggest that thermal variation could alter the dynamics of mate competition, and that-due to potentially different selective optima for males and females-the sexes may respond to changes in temperature in different ways. Specifically, females show a higher potential to adapt but males show a higher potential to be more robust to changes in temperature due to overall higher courtship activity across temperatures.

交配互动的动态会随着各种环境因素的变化而变化。在这里,我们研究了个体在积极求偶的环境条件下持续变化的可能性。具体来说,我们量化了Enchenopa binotata树蚱蜢求偶活动随环境温度在不同生物组织水平上的变化。雄性E. binotata树蛙会发出振动求偶信号,而接受信号的雌性树蛙也会以其特定性别的振动求偶信号作出回应。我们在一定的生态相关温度范围(18 - 36 °C)内对每个个体的求偶信号进行了两次测试。然后,我们测量了由此得出的热求偶活动曲线的可重复性和可变性,包括活动峰值温度和对极端温度的耐受性。我们还研究了不同种群和性别之间的变异模式。我们发现不同种群之间的差异很小,但不同个体之间的差异很大。具体来说,我们发现个体的热泛化或特化程度普遍具有可重复性。然而,可重复性仅限于雌性。我们还发现雌性特征的变异性高于雄性特征,尽管变异性模式并不总能预测重复性模式。这些结果表明,温度变化可能会改变配偶竞争的动态,而且由于雌性和雄性的最佳选择可能不同,两性可能会以不同的方式对温度变化做出反应。具体来说,雌性显示出更高的适应潜力,而雄性则显示出更高的潜力,由于在不同温度下求偶活动总体较多,雄性对温度变化的适应能力更强。
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引用次数: 0
The improbability of detecting trade-offs and some practical solutions. 发现权衡的不可能性和一些切实可行的解决方案。
IF 2.1 3区 生物学 Q3 ECOLOGY Pub Date : 2024-10-10 DOI: 10.1093/jeb/voae096
Marc T J Johnson, Zain Nassrullah

Trade-offs are a fundamental concept in evolutionary biology because they are thought to explain much of nature's biological diversity, from variation in life-histories to differences in metabolism. Despite the predicted importance of trade-offs, they are notoriously difficult to detect. Here we contribute to the existing rich theoretical literature on trade-offs by examining how the shape of the distribution of resources or metabolites acquired in an allocation pathway influences the strength of trade-offs between traits. We further explore how variation in resource distribution interacts with two aspects of pathway complexity (i.e., the number of branches and hierarchical structure) affects tradeoffs. We simulate variation in the shape of the distribution of a resource by sampling 106 individuals from a beta distribution with varying parameters to alter the resource shape. In a simple "Y-model" allocation of resources to two traits, any variation in a resource leads to slopes less than -1, with left skewed and symmetrical distributions leading to negative relationships between traits, and highly right skewed distributions associated with positive relationships between traits. Adding more branches further weakens negative and positive relationships between traits, and the hierarchical structure of pathways typically weakens relationships between traits, although in some contexts hierarchical complexity can strengthen positive relationships between traits. Our results further illuminate how variation in the acquisition and allocation of resources, and particularly the shape of a resource distribution and how it interacts with pathway complexity, makes its challenging to detect trade-offs. We offer several practical suggestions on how to detect trade-offs given these challenges.

权衡是进化生物学中的一个基本概念,因为人们认为权衡可以解释自然界的生物多样性,从生命史的变异到新陈代谢的差异。尽管预测了权衡的重要性,但它们却很难被发现。在这里,我们通过研究在分配途径中获得的资源或代谢物的分布形状如何影响性状间权衡的强度,为现有丰富的权衡理论文献做出了贡献。我们进一步探讨了资源分配的变化如何与途径复杂性的两个方面(即分支数量和层次结构)相互作用,从而影响权衡。我们从贝塔分布中抽取 106 个个体,通过改变参数来模拟资源分布形状的变化,从而改变资源形状。在一个简单的 "Y 模型 "中,将资源分配给两个性状,资源的任何变化都会导致斜率小于-1,左斜和对称分布会导致性状之间的负相关,而高度右斜分布则会导致性状之间的正相关。增加分支会进一步削弱性状间的负相关和正相关关系,路径的分层结构通常会削弱性状间的关系,但在某些情况下,分层的复杂性会加强性状间的正相关关系。我们的研究结果进一步揭示了资源获取和分配的变化,特别是资源分配的形状及其如何与路径复杂性相互作用,是如何使检测权衡变得具有挑战性的。鉴于这些挑战,我们就如何检测权衡提出了一些实用建议。
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引用次数: 0
Taylor's famous result. 泰勒的著名成果
IF 2.1 3区 生物学 Q3 ECOLOGY Pub Date : 2024-10-10 DOI: 10.1093/jeb/voae110
Callum Ferrando
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引用次数: 0
Evolution of the division of labour between templates and catalysts in spatial replicator models. 空间复制器模型中模板和催化剂分工的演变。
IF 2.1 3区 生物学 Q3 ECOLOGY Pub Date : 2024-10-10 DOI: 10.1093/jeb/voae098
Yao Fu, Nobuto Takeuchi

The central dogma of molecular biology can be conceptualised as the division of labour between templates and catalysts, where templates transmit genetic information, catalysts accelerate chemical reactions, and the information flows from templates to catalysts but not from catalysts to templates. How can template-catalyst division evolve in primordial replicating systems? A previous study has shown that even if the template-catalyst division does not provide an immediate fitness benefit, it can evolve through symmetry breaking between replicating molecules when the molecules are compartmentalised into protocells. However, cellular compartmentalisation may have been absent in primordial replicating systems. Here, we investigate whether cellular compartmentalisation is necessary for the evolution of the template-catalyst division via symmetry breaking using an individual-based model of replicators in a two-dimensional space. Our results show that replicators evolve the template-catalyst division via symmetry breaking when their diffusion constant is sufficiently high, a condition that results in low genetic relatedness between replicators. The evolution of the template-catalyst division reduces the risk of invasion by "cheaters," replicators that have no catalytic activities, encode no catalysts, but replicate to the detriment of local population growth. Our results suggest that the evolution of the template-catalyst division via symmetry breaking does not require cellular compartmentalization and is, instead, a general phenomenon in replicators with structured populations.

分子生物学的核心教条可以概念化为模板和催化剂之间的分工,其中模板传递基因的形成,催化剂加速化学反应,信息从模板流向催化剂,而不是从催化剂流向模板。模板-催化剂分工如何在原始复制系统中演化?之前的一项研究表明,即使模板-催化剂分工并不能带来直接的契合度好处,但当分子被分隔成原生细胞时,它可以通过复制分子之间的对称性破坏而进化。然而,原始复制系统中可能并不存在细胞分隔。在此,我们利用二维空间中基于个体的复制器模型,研究了细胞分隔是否是通过对称性断裂实现模板-催化剂分裂进化的必要条件。我们的研究结果表明,当复制子的扩散常数足够高时,复制子会通过对称性断裂演化出模板-催化剂分裂,这种情况会导致复制子之间的遗传相关性较低。模板-催化剂分裂的进化降低了 "作弊者 "入侵的风险。"作弊者 "是指没有催化活性、不编码催化剂、但复制不利于本地种群增长的复制者。我们的研究结果表明,通过对称性破坏实现模板-催化剂分裂的进化并不需要细胞区隔,而是具有结构化种群的复制子的普遍现象。
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引用次数: 0
Spatial sorting caused by downstream dispersal: implication for morphological evolution in isolated populations of fat minnow inhabiting small streams flowing through terraced rice paddies. 下游扩散引起的空间分选:对栖息在流经梯田的小溪中的肥鲦孤立种群形态进化的影响。
IF 2.1 3区 生物学 Q3 ECOLOGY Pub Date : 2024-10-10 DOI: 10.1093/jeb/voae105
Hiroyuki Yamada

The evolutionary forces arising from differential dispersal are known as "spatial sorting," distinguishing them from natural selection arising from differential survival or differential reproductive success. Spatial sorting is often considered to be transient because it is offset by the return of dispersers in many cases. However, in riverine systems, spatial sorting by downstream dispersal can be cumulative in habitats upstream of migration barriers such as weirs or falls, which can block the return of the dispersers. Terraced rice paddies are often found on steep mountain slopes in Japan and often incorporate small streams with numerous migration barriers. This study investigated the morphological features of fat minnow, Rhynchocypris oxycephalus jouyi (Cyprinidae), inhabiting above-barrier habitats of the small streams flowing through flood-prone terraced rice paddies and examined their function via a mark-recapture experiment. Although this study did not reveal a consistent pattern across all local populations, some above-barrier populations were characterized by individuals with a thinner caudal peduncle, thinner body, and longer ventral caudal fin lobes than those in neighbouring mainstream populations. A mark-recapture experiment during minor flooding showed that a thinner caudal peduncle and deeper body helped fat minnow avoid downstream dispersal and ascend a small step, and suggested that a longer ventral caudal fin lobe was important for ascending. These results suggest that the caudal morphologies of some above-barrier populations avoid or reduce the risk of downstream dispersal, supporting the idea that spatial sorting shapes functional traits, enhancing the spatial persistence of individuals in upstream habitats.

差异散布所产生的进化力量被称为 "空间分选",有别于差异生存或差异繁殖成功所产生的自然选择。空间分选通常被认为是短暂的,因为它在许多情况下会被分散者的回归所抵消。然而,在河流系统中,下游散布的空间分选在洄游障碍(如堰塘或瀑布)上游的生境中可能会累积,因为这些障碍会阻碍散布者返回。在日本,梯田通常位于陡峭的山坡上,而且往往包含有许多迁移障碍的小溪流。本研究调查了栖息在易受洪水侵袭的梯田小溪障碍物上方生境中的肥鲦鱼(Rhynchocypris oxycephalus jouyi,鲤科)的形态特征,并通过标记再捕捉实验研究了它们的功能。尽管这项研究并未发现所有当地种群的一致模式,但与邻近的主流种群相比,一些障碍以上种群的个体具有尾柄较细、身体较瘦和腹鳍尾叶较长的特征。洪水期间的标记-重捕实验表明,较细的尾柄和较深的身体有助于肥鲦鱼避免向下游分散并登上一个小台阶,同时表明较长的腹尾鳍叶对登上台阶很重要。这些结果表明,一些障碍以上种群的尾鳍形态可以避免或减少向下游扩散的风险,支持了空间分选塑造功能特征、提高个体在上游栖息地的空间持久性的观点。
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引用次数: 0
Empirical evidence of resource dependent evolution of payoff matrices in Saccharomyces cerevisiae populations. 在酿酒酵母种群中,报酬矩阵的进化依赖于资源的经验证据。
IF 2.1 3区 生物学 Q3 ECOLOGY Pub Date : 2024-10-10 DOI: 10.1093/jeb/voae128
Pavithra Venkataraman, Anjali Mahilkar, Namratha Raj, Supreet Saini

In evolutionary game theory, a relative comparison of the cost and benefit associated with obtaining a resource, called payoff, is used as an indicator of fitness of an organism. Payoffs of different strategies, quantitatively represented as payoff matrices, are used to understand complex inter-species and intra-species interactions like cooperation, mutualism, and altruism. Payoff matrices, however, are usually treated as invariant with time - largely due to the absence of any empirical data quantifying their evolution. In this paper, we present empirical evidence of three types of resource-dependent changes in the payoff matrices of evolving Saccharomyces cerevisiae populations. We show that depending on the carbon source and participating genotypes, N-player games could collapse, be born, or be maintained. Our results highlight the need to consider the dynamic nature of payoff matrices while making even short-term predictions about population interactions and dynamics.

在进化博弈论中,与获取资源相关的成本和收益的相对比较(称为报酬)被用作生物体适应性的指标。不同策略的报酬以报酬矩阵的形式定量表示,用于理解物种间和物种内复杂的相互作用,如合作、互惠和利他主义。然而,报酬矩阵通常被视为随时间变化而不变--这主要是由于缺乏量化报酬矩阵演变的经验数据。在本文中,我们通过实证研究发现,在不断进化的酿酒酵母种群中,报酬矩阵会发生三种依赖资源的变化。我们发现,根据碳源和参与基因型的不同,N 人游戏可能会崩溃、诞生或维持。我们的研究结果凸显了在对种群相互作用和动态进行短期预测时考虑报酬矩阵动态性质的必要性。
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引用次数: 0
The relationship between neutral genetic diversity and performance in wild arthropod populations. 野生节肢动物种群的中性遗传多样性与表现之间的关系。
IF 2.1 3区 生物学 Q3 ECOLOGY Pub Date : 2024-10-10 DOI: 10.1093/jeb/voae099
Tammy Ai Tian Ho, Philip A Downing, Mads F Schou, Jesper Bechsgaard, Philip Francis Thomsen, Tove H Jorgensen, Trine Bilde

Larger effective populations (Ne) are characterized by higher genetic diversity, which is expected to predict population performance (average individual performance that influences fitness). Empirical studies of the relationship between neutral diversity and performance mostly represent species with small Ne, while there is limited data from the species-rich and ecologically important arthropods that are assumed to have large Ne but are threatened by massive declines. We performed a systematic literature search and used meta-analytical models to test the prediction of a positive association between neutral genetic diversity and performance in wild arthropods. From 14 relevant studies of 286 populations, we detected a weak (r = 0.15) but nonsignificant positive association both in the full data set (121 effect sizes) and a reduced data set accounting for dependency (14 effect sizes). Theory predicts that traits closely associated with fitness show a relatively stronger correlation with neutral diversity; this relationship was upheld for longevity and marginally for reproduction. Our analyses point to major knowledge gaps in our understanding of relationships between neutral diversity and performance. Future studies using genome-wide data sets across populations could guide more powerful designs to evaluate relationships between adaptive, deleterious and neutral diversity and performance.

有效种群(Ne)越大,遗传多样性就越高,从而有望预测种群表现(影响适应性的个体平均表现)。关于中性多样性与种群表现之间关系的实证研究大多以 Ne 较小的物种为对象,而物种丰富且具有重要生态意义的节肢动物的数据却很有限,这些物种被认为具有较大的 Ne,但却面临着大规模衰退的威胁。我们进行了系统的文献检索,并使用元分析模型检验了野生节肢动物中性遗传多样性与表现之间正相关的预测。在对 286 个种群进行的 14 项相关研究中,我们在完整数据集(121 个效应大小)和考虑了依赖性的缩小数据集(14 个效应大小)中都检测到了微弱(r = 0.15)但不显著的正相关。根据理论预测,与适应性密切相关的性状与中性多样性的相关性相对较强,这种关系在长寿方面得到了证实,在繁殖方面也略微得到了证实。我们的分析表明,在了解中性多样性与表现之间的关系方面,我们还存在很大的知识差距。未来利用全基因组数据集对不同种群进行的研究将为评估适应性、有害性和中性多样性与表现之间的关系提供更有力的设计指导。
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引用次数: 0
Two sides of the same coin? Transient hybridization in refugia and rapid postglacial ecological divergence ensure the evolutionary persistence of sister Nothofagus. 一枚硬币的两面?避难所中的短暂杂交和冰川期后的快速生态分化确保了姊妹树Nothofagus的进化持续性。
IF 2.1 3区 生物学 Q3 ECOLOGY Pub Date : 2024-10-10 DOI: 10.1093/jeb/voae100
Andrea C Premoli, Paula Mathiasen, María C Acosta, Robert D McCulloch

Glacial periods have been considered as inhospitable environments that consist of treeless vegetation at higher latitudes. The fossil record suggests many species survived the Last Glacial Maximum within refugia, usually at lower latitudes. However, phylogeographic studies have given support to the existence of previously unknown high-latitude refugia that were not detected in the fossil record. Here, we test the hypothesis that cold-tolerant trees of Patagonia survived cold periods in microclimatically favourable locales where hybridization occurred between sister taxa. To study local presence through glacial periods in multiple refugia, we used pollen records and genetic information (isozymes, microsatellites, and combined nuclear and chloroplast DNA sequences) of population pairs of Nothofagus antarctica and N. pumilio that belong to the ancient subgenus Nothofagus which can potentially hybridize in nature, along their entire latitudinal range in Patagonia. Studied species share the N. dombeyi type pollen, which was abundant at >20% in the northernmost latitudinal bands (35-43°S), even during the Last Glacial Maximum. Mid- and southern latitudinal records (44-55°S) yielded lower abundances of ~10% that increased after c. 15.0 cal. ka BP. Therefore, fossil pollen evidence suggests a long-lasting local presence of Nothofagus throughout glacial-interglacial cycles but mostly as small populations between 44°S and 51°S. We found species-specific and shared genetic variants, the latter of which attained relatively high frequencies, thus providing evidence of ancestral polymorphisms. Populations of each species were similarly diverse, suggesting survival throughout the latitudinal range. Estimates of coalescent divergence times were broadly synchronous across latitudes, suggesting that regional climates similarly affected populations and species that hybridized through climate cycles, fostering local persistence.

冰川期一直被认为是荒凉的环境,在高纬度地区由无树植被组成。化石记录表明,许多物种在末次冰川极盛期(LGM)的避难所幸存下来,避难所通常位于低纬度地区。然而,系统地理学研究支持了化石记录中未发现的、之前未知的高纬度避难所的存在。在这里,我们检验了巴塔哥尼亚耐寒树种在小气候有利的地方度过寒冷时期、姊妹类群之间发生杂交的假设。为了研究在冰川期多个避难所中当地存在的情况,我们使用了花粉记录和巴塔哥尼亚整个纬度范围内 Nothofagus antarctica 和 N. pumilio 种群对的遗传信息(同工酶、微卫星以及核和叶绿体 DNA 组合序列)。所研究的物种共享 N. dombeyi 型花粉,这种花粉在最北纬度带(35-43°S)的含量大于 20%,甚至在远古时期也是如此。中纬度和南纬度记录(44-55°S)的含量较低,约为 10%,在约 15.0 cal. ka BP 之后有所增加。因此,花粉化石证据表明,在整个冰川-间冰期周期中,Nothofagus在当地长期存在,但主要是在南纬44-51°之间的小种群。我们发现了物种特有的遗传变异和共有的遗传变异,后者的频率相对较高,从而提供了祖先多态性的证据。每个物种的种群都具有相似的多样性,这表明它们在整个纬度范围内都能生存。各纬度的聚合分化时间估计值大致同步,这表明区域气候对种群和物种产生了类似的影响,这些种群和物种通过气候周期杂交,促进了当地的持久性。
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引用次数: 0
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