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VisAC: An interactive tool for visual analysis of consanguinity in the ancestry of individuals VisAC:一个可视化分析个人祖先血缘关系的交互式工具
IF 2.3 4区 计算机科学 Q2 Computer Science Pub Date : 2022-05-21 DOI: 10.1177/14738716221096383
J. Borges
Genealogy studies are growing in popularity, and researchers are increasingly using visualization methods to summarize and communicate their findings. A family tree is a visual representation of family members and their relationships that is commonly used to support the research of a family’s history and publish the results. In some cases, an ancestor may occur in more than one place in the lineage of an individual, which is one of the reasons for the occurrence of consanguineous marriages, that is, marriages between blood relative spouses. Current methods for family tree visualization were not designed to analyze and assess the level of consanguinity in the ancestry of individuals. This paper proposes VisAC, an interactive tool to support the visual analysis of consanguinity in individuals’ ancestry. The inbreeding coefficient is used as a measure of consanguinity. The coefficient corresponds to an estimate of the probability that two alleles (a variant of a given gene) in the DNA were inherited from the same individual. A visualization design and an interactive tool were developed with genealogists’ support. In addition, the feedback collected through a questionnaire about two demo videos and tests with three target users strongly supports the effectiveness of the family tree visual representation and the adequacy of the interactive tool for the exploratory analysis task. Real-world examples are given to illustrate the usefulness of the visualization design, and an example of exploratory analysis is presented to illustrate the use of the interactive tool. In summary, this work formulates the task of visual analysis of consanguinity in ancestors’ trees and proposes VisAC, a new visualization tool to support the task.
家谱研究越来越受欢迎,研究人员越来越多地使用可视化方法来总结和交流他们的发现。家谱是家庭成员及其关系的视觉表示,通常用于支持对家庭历史的研究并公布结果。在某些情况下,祖先可能出现在个人血统中的多个地方,这是发生血亲婚姻的原因之一,即血亲配偶之间的婚姻。目前的家谱可视化方法并不是为了分析和评估个体祖先的血缘水平而设计的。本文提出了VisAC,这是一个交互式工具,用于支持对个人祖先血缘关系的视觉分析。近亲繁殖系数被用来衡量血缘关系。该系数对应于对DNA中两个等位基因(给定基因的变体)从同一个体遗传的概率的估计。在系谱学家的支持下,开发了可视化设计和交互式工具。此外,通过对两个演示视频的问卷调查和对三个目标用户的测试收集的反馈有力地支持了家谱视觉表示的有效性和交互式工具对探索性分析任务的充分性。给出了真实世界的例子来说明可视化设计的有用性,并给出了一个探索性分析的例子来解释交互式工具的使用。总之,这项工作制定了祖先树中血缘关系的可视化分析任务,并提出了一种新的可视化工具VisAC来支持这项任务。
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引用次数: 1
Visual cluster separation using high-dimensional sharpened dimensionality reduction 基于高维锐化降维的视觉聚类分离
IF 2.3 4区 计算机科学 Q2 Computer Science Pub Date : 2022-04-21 DOI: 10.1177/14738716221086589
Youngjoo Kim, Alexandru C Telea, Scott C Trager, Jos BTM Roerdink
Applying dimensionality reduction (DR) to large, high-dimensional data sets can be challenging when distinguishing the underlying high-dimensional data clusters in a 2D projection for exploratory a...
将降维(DR)应用于大型高维数据集,在2D投影中区分潜在的高维数据簇是一项挑战。
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引用次数: 0
Visualizing the invisible: User-centered design of a system for the visualization of flows and concentrations of particles in the air 可视化看不见的:以用户为中心的系统设计,用于可视化空气中颗粒的流动和浓度
IF 2.3 4区 计算机科学 Q2 Computer Science Pub Date : 2022-04-21 DOI: 10.1177/14738716221085965
O. Christmann, Sylvain Fleury, J. Migaud, Vincent Raimbault, Benjamin Poussard, Thibaut Guitter, G. Gorisse, S. Richir
This study presents two experiments addressing the representation of scientific data, in particular airflows, with a user-centered design approach. Our objective is to provide users feedback to data visualization designers to help them choose an air flow representation that is understandable and attractive for non-experts. The first study focuses on static markers allowing to visualize an airflow, with information characterizing the direction and the intensity. In a second study, carried out in an immersive virtual environment, two information were added, the temporal evolution and the concentration of pollutants in the air. To measure comprehension and attractiveness, participants were asked to answer items on Likert scales (experiment 1) and to answer User Experience Questionnaire (experiment 2). The results revealed that arrows seem to be a very common and understandable form to represent orientation and direction of flow, but that they should be improved to be more attractive by making them brighter and more transparent, as the representation could occlude the scene, especially in virtual reality. To solve this problem, we suggest giving the users the ability to define the specific area where they want to see the air flow, using a cross-sectional view. Vector fields and streamlines could therefore be applied in a virtual reality context.
本研究提出了两个实验解决科学数据的表示,特别是气流,以用户为中心的设计方法。我们的目标是向数据可视化设计师提供用户反馈,帮助他们选择对非专家来说容易理解和有吸引力的气流表示。第一项研究侧重于静态标记,使气流可视化,并提供表征方向和强度的信息。在第二项研究中,在沉浸式虚拟环境中进行,增加了两个信息,即时间演变和空气中污染物的浓度。为了测量理解和吸引力,参与者被要求回答李克特量表(实验1)和用户体验问卷(实验2)的问题。结果表明,箭头似乎是一种非常常见和可理解的形式,以表示方向和流量,但他们应该改进,使其更明亮和更透明,以更具吸引力,因为这种表示可能会遮挡场景,特别是在虚拟现实中。为了解决这个问题,我们建议让用户能够使用横截面视图来定义他们想要看到气流的特定区域。因此,矢量场和流线可以应用于虚拟现实环境中。
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引用次数: 1
Which emphasis technique to use? Perception of emphasis techniques with varying distractors, backgrounds, and visualization types. 使用哪种强调技巧?对不同干扰物、背景和可视化类型的强调技巧的感知。
IF 2.3 4区 计算机科学 Q2 Computer Science Pub Date : 2022-04-01 Epub Date: 2021-09-22 DOI: 10.1177/14738716211045354
Aristides Mairena, Carl Gutwin, Andy Cockburn

Emphasis effects are visual changes that make data elements distinct from their surroundings. Designers may use computational saliency models to predict how a viewer's attention will be guided by a specific effect; however, although saliency models provide a foundational understanding of emphasis perception, they only cover specific visual effects in abstract conditions. To address these limitations, we carried out crowdsourced studies that evaluate emphasis perception in a wider range of conditions than previously studied. We varied effect magnitude, distractor number and type, background, and visualization type, and measured the perceived emphasis of 12 visual effects. Our results show that there are perceptual commonalities of emphasis across a wide range of environments, but also that there are limitations on perceptibility for some effects, dependent on a visualization's background or type. We developed a model of emphasis predictability based on simple scatterplots that can be extended to other viewing conditions. Our studies provide designers with new understanding of how viewers experience emphasis in realistic visualization settings.

强调效果是使数据元素与周围环境区别开来的视觉变化。设计师可以使用计算显著性模型来预测观众的注意力将如何被特定的效果所引导;然而,尽管显著性模型提供了对重点感知的基本理解,但它们仅涵盖抽象条件下的特定视觉效果。为了解决这些局限性,我们开展了众包研究,在比以前研究更广泛的条件下评估重点感知。我们改变了效果的大小、干扰物的数量和类型、背景和可视化类型,并测量了12种视觉效果的感知重点。我们的研究结果表明,在广泛的环境中存在强调的感知共性,但也存在某些效果的可感知性限制,这取决于可视化的背景或类型。我们开发了一个基于简单散点图的强调可预测性的模型,该模型可以扩展到其他观看条件。我们的研究为设计师提供了新的理解观众如何在现实的可视化设置中体验重点。
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引用次数: 4
Interactive visualization literacy: The state-of-the-art 交互式可视化素养:最先进的
IF 2.3 4区 计算机科学 Q2 Computer Science Pub Date : 2022-03-10 DOI: 10.1177/14738716221081831
Elif E. Firat, Alark Joshi, R. Laramee
With the advent of novel visualization techniques to convey complex information, data visualization literacy is growing in importance. Two facets of literacy are user understanding and the discovery of visual patterns with the help of graphical representations. The research literature on visualization literacy provides useful guidance and important opportunities for further studies in this field. This survey examines and classifies prior research on visualization literacy that analyzes how well users understand novel data representations. To our knowledge, this is the first comprehensive survey paper with a focus on interactive visualization literacy. We categorize existing relevant research into unique subject groups that facilitate and inform comparisons of related literature and provide an overview of the same. Additionally, the survey/classification also provides an overview of the various evaluation techniques used in this field of research due to their challenging nature. Our novel classification enables researchers to find both mature and unexplored directions that may lead to future work. This survey serves as a valuable resource for both beginners and experienced researchers interested in the topic of visualization literacy.
随着新的可视化技术的出现来传达复杂的信息,数据可视化素养变得越来越重要。读写能力的两个方面是用户理解和借助图形表示发现视觉模式。可视化素养的研究文献为该领域的进一步研究提供了有益的指导和重要的机会。本调查对可视化素养的先前研究进行了检查和分类,这些研究分析了用户对新数据表示的理解程度。据我们所知,这是第一篇以交互式可视化素养为重点的综合调查论文。我们将现有的相关研究分类为独特的主题组,以促进和告知相关文献的比较,并提供相同的概述。此外,调查/分类还提供了在该研究领域中使用的各种评估技术的概述,因为它们具有挑战性。我们的新分类使研究人员能够找到可能导致未来工作的成熟和未探索的方向。这项调查为初学者和有经验的研究人员对可视化素养的话题感兴趣提供了宝贵的资源。
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引用次数: 18
Integrating annotations into multidimensional visual dashboards 将注释集成到多维可视化仪表板中
IF 2.3 4区 计算机科学 Q2 Computer Science Pub Date : 2022-03-07 DOI: 10.1177/14738716221079591
Sriram Karthik Badam, Senthil K. Chandrasegaran, N. Elmqvist
Multidimensional data is often visualized using coordinated multiple views in an interactive dashboard. However, unlike in infographics where text is often a central part of the presentation, there is currently little knowledge of how to best integrate text and annotations in a visualization dashboard. In this paper, we explore a technique called FacetNotes for presenting these textual annotations on top of any visualization within a dashboard irrespective of the scale of data shown or the design of visual representation itself. FacetNotes does so by grouping and ordering the textual annotations based on properties of (1) the individual data points associated with the annotations, and (2) the target visual representation on which they should be shown. We present this technique along with a set of user interface features and guidelines to apply it to visualization interfaces. We also demonstrate FacetNotes in a custom visual dashboard interface. Finally, results from a user study of FacetNotes show that the technique improves the scope and complexity of insights developed during visual exploration.
多维数据通常使用交互式仪表板中协调的多个视图进行可视化。然而,与信息图形中文本通常是演示的中心部分不同,目前对如何在可视化面板中最好地集成文本和注释知之甚少。在本文中,我们探索了一种名为FacetNotes的技术,用于在仪表板内的任何可视化之上显示这些文本注释,而不管显示的数据规模或视觉表示本身的设计如何。FacetNotes通过基于以下属性对文本注释进行分组和排序来做到这一点:(1)与注释相关联的单个数据点,以及(2)它们应该在其上显示的目标视觉表示。我们介绍了这项技术以及一组将其应用于可视化界面的用户界面特性和指南。我们还在自定义的可视化面板界面中演示FacetNotes。最后,FacetNotes的用户研究结果表明,该技术提高了视觉探索过程中开发的见解的范围和复杂性。
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引用次数: 2
A comparative analysis of matrix reordering algorithms regarding canonical data patterns 基于规范数据模式的矩阵重排序算法的比较分析
IF 2.3 4区 计算机科学 Q2 Computer Science Pub Date : 2022-01-01 DOI: 10.1177/14738716221091487
M. Baroni, C. G. Silva
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引用次数: 0
HFTViz: Visualization for the exploration of high frequency trading data HFTViz:用于探索高频交易数据的可视化
IF 2.3 4区 计算机科学 Q2 Computer Science Pub Date : 2021-12-29 DOI: 10.1177/14738716211064921
Javad Yaali, Vincent Grégoire, Thomas Hurtut
High Frequency Trading (HFT), mainly based on high speed infrastructure, is a significant element of the trading industry. However, trading machines generate enormous quantities of trading messages that are difficult to explore for financial researchers and traders. Visualization tools of financial data usually focus on portfolio management and the analysis of the relationships between risk and return. Beside risk-return relationship, there are other aspects that attract financial researchers like liquidity and moments of flash crashes in the market. HFT researchers can extract these aspects from HFT data since it shows every detail of the market movement. In this paper, we present HFTViz, a visualization tool designed to help financial researchers explore the HFT dataset provided by NASDAQ exchange. HFTViz provides a comprehensive dashboard aimed at facilitate HFT data exploration. HFTViz contains two sections. It first proposes an overview of the market on a specific date. After selecting desired stocks from overview visualization to investigate in detail, HFTViz also provides a detailed view of the trading messages, the trading volumes and the liquidity measures. In a case study gathering five domain experts, we illustrate the usefulness of HFTViz.
高频交易(HFT)主要基于高速基础设施,是交易行业的重要组成部分。然而,交易机器会产生大量的交易信息,金融研究人员和交易员很难探索这些信息。金融数据的可视化工具通常侧重于投资组合管理和风险与回报之间关系的分析。除了风险收益关系,还有其他方面吸引着金融研究人员,比如流动性和市场瞬间崩盘。HFT研究人员可以从HFT数据中提取这些方面,因为它显示了市场运动的每一个细节。在本文中,我们介绍了HFTViz,这是一个可视化工具,旨在帮助金融研究人员探索纳斯达克交易所提供的HFT数据集。HFTViz提供了一个全面的仪表盘,旨在促进HFT数据探索。HFTViz包含两个部分。它首先提出了一个特定日期的市场概述。在从概览可视化中选择所需股票进行详细调查后,HFTViz还提供了交易信息、交易量和流动性指标的详细视图。在一个收集了五位领域专家的案例研究中,我们说明了HFTViz的有用性。
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引用次数: 0
Design guidelines for narrative maps in sensemaking tasks 在意义生成任务中叙述地图的设计准则
IF 2.3 4区 计算机科学 Q2 Computer Science Pub Date : 2021-12-22 DOI: 10.1177/14738716221079593
Brian Felipe Keith Norambuena, Tanushree Mitra, Chris North
Narrative sensemaking is a fundamental process to understand sequential information. Narrative maps are a visual representation framework that can aid analysts in their narrative sensemaking process. Narrative maps allow analysts to understand the big picture of a narrative, uncover new relationships between events, and model the connection between storylines. We seek to understand how analysts create and use narrative maps in order to obtain design guidelines for an interactive visualization tool for narrative maps that can aid analysts in narrative sensemaking. We perform two experiments with a data set of news articles. The insights extracted from our studies can be used to design narrative maps, extraction algorithms, and visual analytics tools to support the narrative sensemaking process. The contributions of this paper are three-fold: (1) an analysis of how analysts construct narrative maps; (2) a user evaluation of specific narrative map features; and (3) design guidelines for narrative maps. Our findings suggest ways for designing narrative maps and extraction algorithms, as well as providing insights toward useful interactions. We discuss these insights and design guidelines and reflect on the potential challenges involved. As key highlights, we find that narrative maps should avoid redundant connections that can be inferred by using the transitive property of event connections, reducing the overall complexity of the map. Moreover, narrative maps should use multiple types of cognitive connections between events such as topical and causal connections, as this emulates the strategies that analysts use in the narrative sensemaking process.
叙事意义是理解序列信息的基本过程。叙事地图是一种视觉表现框架,可以帮助分析人员在叙事过程中理解意义。叙事地图使分析人员能够理解叙事的大局,揭示事件之间的新关系,并为故事情节之间的联系建立模型。我们试图了解分析人员如何创建和使用叙事地图,以便获得叙事地图的交互式可视化工具的设计指南,该工具可以帮助分析人员进行叙事意义构建。我们用一组新闻文章的数据进行了两个实验。从我们的研究中提取的见解可用于设计叙事地图,提取算法和视觉分析工具,以支持叙事意义构建过程。本文的贡献有三个方面:(1)分析了分析师如何构建叙事地图;(2)用户对具体叙事地图特征的评价;(3)叙事地图的设计准则。我们的发现为设计叙事地图和提取算法提供了方法,并为有用的交互提供了见解。我们将讨论这些见解和设计指南,并反思所涉及的潜在挑战。作为重点,我们发现叙事地图应该避免通过使用事件连接的传递属性推断出的冗余连接,从而降低地图的整体复杂性。此外,叙事地图应该在事件之间使用多种类型的认知联系,如主题和因果联系,因为这模仿了分析师在叙事意义构建过程中使用的策略。
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引用次数: 3
Virtual-Reality graph visualization based on Fruchterman-Reingold using Unity and SteamVR 基于Unity和SteamVR的Fruchterman-Reingold虚拟现实图形可视化
IF 2.3 4区 计算机科学 Q2 Computer Science Pub Date : 2021-12-15 DOI: 10.1177/14738716211060306
G. Kortemeyer
The paper describes a method for the immersive, dynamic visualization of undirected, weighted graphs. Using the Fruchterman-Reingold method, force-directed graphs are drawn in a Virtual-Reality system. The user can walk through the data, as well as move vertices using controllers, while the network display rearranges in realtime according to Newtonian physics. In addition to the physics behind the employed method, the paper explains the most pertinent computational mechanisms for its implementation, using Unity, SteamVR, and a Virtual-Reality system such as HTC Vive (the source package is made available for download). It was found that the method allows for intuitive exploration of graphs with on the order of 10 2 vertices, and that dynamic extrusion of vertices and realtime readjustment of the network structure allows for developing an intuitive understanding of the relationship of a vertex to the remainder of the network. Based on this observation, possible future developments are suggested.
本文描述了一种无向加权图的沉浸式动态可视化方法。使用Fruchterman-Reingold方法,在虚拟现实系统中绘制了力定向图。用户可以浏览数据,也可以使用控制器移动顶点,而网络显示则根据牛顿物理学实时重新排列。除了所用方法背后的物理原理外,本文还解释了其实现的最相关的计算机制,使用Unity、SteamVR和HTC Vive等虚拟现实系统(源程序包可供下载)。已经发现,该方法允许对具有10个2个顶点数量级的图进行直观的探索,并且顶点的动态挤出和网络结构的实时重新调整允许对顶点与网络其余部分的关系进行直观的理解。基于这一观察,提出了未来可能的发展。
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引用次数: 5
期刊
Information Visualization
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