Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology最新文献

Recent studies have established the gut microbiome as a crucial player in breast cancer diagnosis, progression, and treatment. Distinct microbial patterns have shown promise as non-invasive diagnostic and prognostic biomarkers, supporting patient stratification and risk assessment based on microbiota composition. The gut microbiome also modulates estrogen metabolism, influencing the risk of hormone receptor-positive breast cancer, while dysbiosis can promote chronic inflammation and tumor expansion. Moreover, accumulating evidence demonstrates that gut bacteria can alter responses to chemotherapy and immunotherapy, suggesting that microbiota modulation may enhance treatment efficacy. With the advent of omics technologies and machine learning, intricate host–microbe interactions are being decoded, revealing new molecular targets and therapeutic opportunities. Importantly, early clinical and interventional studies using probiotics, prebiotics, and fecal microbiota transplantation (FMT) are being explored to restore microbial balance, mitigate therapy-related side effects, and improve antitumor immunity in breast cancer patients. Together, these advances underscore the translational potential of microbiome research, paving the way for microbiota-guided diagnostic, prognostic, and therapeutic strategies in personalized breast cancer management.

Brazil is a global leader in grain production, with corn reaching 122 million tons in the 2024/2025 harvest. Pest control, particularly of Spodoptera frugiperda, depends heavily on cypermethrin, a Class II hazardous synthetic insecticide with significant environmental risks. This study assessed the tolerance and degradation capacity of Pseudomonas-affiliated strain and Burkholderia-like strain in cypermethrin-contaminated environments, along with their indole-3-acetic acid (IAA) production and impact on early maize development. Both strains tolerated the insecticide and grew at varying concentrations, with Burkholderia-like strain showing superior degradation potential at 25 mg L⁻¹. Microcosm respirometry indicated initial CO₂ reduction post-inoculation due to microbial competition, followed by increased CO₂ at 200 mg L⁻¹, suggesting cypermethrin use as a carbon source by adapted microbes. IAA production by Burkholderia-like strain remained high despite contamination, whereas Pseudomonas-affiliated strain showed delayed synthesis. Growth assays revealed that Burkholderia-like strain (UAGC867) promoted shoot development and dry biomass accumulation in maize seedlings under cypermethrin stress, an effect not observed for Pseudomonas-affiliated strain. These findings highlight the potential of Burkholderia-like strain for bioremediation and plant growth promotion in insecticide-impacted agricultural systems, offering a sustainable approach to enhance productivity while reducing environmental harm.

Xylanases are used in a wide range of applications such as food, feed, and bioenergy production. Many industrial applications need to be carried out at high temperatures, so it is important to discover new thermophilic xylanases. In this study, a xylanase gene (576 bp), denominated apxyn11a, was obtained from Allostreptomyces psammosilenae YIM DR4008^T and was cloned and heterologously expressed in Escherichia coli BL21(DE3). The recombinant xylanase (ApXyn11A) was isolated and purified by Ni²⁺-affinity chromatography. The molecular weight of recombinant ApXyn11A was 22.7 kDa. Its optimum reaction temperature and pH were 65 °C and 5.6, respectively. It maintained above 95% relative activity after incubation at 55 °C for 120 min and more than 80% residual activity after incubation in pH 4.0–6.0 for 24 h. What more, ApXyn11A exhibited more than 60% relative activity in presence of 3.5 M NaCl. The kinetic parameters K_m (0.2 mg/mL), V_max (2000 μmol/min/mg) and K_cat (755.09 S⁻¹) were determined using corn cob xylan as the substrate. These indicate that ApXyn11A has the properties of small molecular weight, thermophilic, salt and acid tolerance, which predicts the potential use of ApXyn11A in food, feed, paper and bioenergy fields.

Vannamei shrimp is a promising aquaculture commodity, but presence of Vibrio parahaemolyticus bacteria in cultivation poses a challenge to increasing productivity. Quorum sensing allows bacteria to regulate pathogenicity based on population density. The aim of this study were to screen antiquorum sensing agents that can inhibit bacterial communication, thereby reducing pathogen virulence. The method used in the screening process goes through several stages, such as isolation of anemone symbiont bacteria, screening for inhibition of violacein and antibiofilm production, as well as molecular identification of potential isolates. The highest inhibition of visualization of violacein (diameter of non-purple zone) was shown by SG03 (28.00 mm). Based on the analysis of the inhibition percentage of violacein production and the percentage inhibition of biofilm formation from 105 isolates obtained from 3 species of sea anemones, there are six isolates with inhibition percentage values above 80%, namely HM12, HM19, EQ30, SG03, HM05, and EQ05. Based on 16s RNA identification, six potential isolates were identified as Schouchella sp., Shewanella sp., Halobacillus sp., Pseudomonas sp., Micrococcus sp., and Psychrobacter sp., respectively. Based on whole genome analysis (WGS), isolate HM19 detected the AHL acylase gene (PvdQ), EQ 05 detected the AHL lactonase gene (aiiA), and isolate SG 03 detected the aiiA and PvdQ genes. Six isolates of anemone symbionts have been identified that show the ability to produce anti-quorum sensing agents. This provides potential for effective and environmentally friendly control of pathogenic bacteria.

We investigated the oscillatory expansion of Bacillus subtilis biofilms on minimal salts glycerol glutamate (MSgg) agar by modulating the concentration of the nutrient glutamate and the rigidity of the surface via agar concentration. The concentration of glutamate and agar influenced the parameters of biofilm oscillation. Specifically, elevated glutamate levels boosted the initial growth rate (within the first 15 h) and prolonged the oscillation period. Conversely, increasing the agar concentration physically restrained colony expansion and dampened the amplitude of growth rate variations, leading to a more uniform, yet oscillatory, progression. Beyond altering the physicochemical environment, we probed the biofilm under competitive condition; the oscillatory period lengthened and resulted in asymmetric colony morphology. Furthermore, during self-healing following mechanical disruption, the oscillatory pattern was intact; the biofilm regenerated, with rapid recovery at the colony edges than at the center. To validate these experimental observations, we developed a spatial-temporal model of biofilm metabolism. This computational model successfully simulated the oscillatory growth on solid surfaces. It confirmed that the interplay between localized nutrient availability and the development of physical heterogeneity in biofilm thickness is a fundamental driver of the oscillatory patterns observed in B. subtilis biofilms, providing a unified theoretical basis for our empirical findings.

Graphical abstract

Chromobacterium subtsugae is the only species in this genus exploited for biological pest control. In this study, we demonstrated the insecticidal properties of Chromobacterium piscinae ESALQ6200 against Dalbulus maidis, even at low concentrations, using treatments with only bacterial cells and cell-free filtered supernatant containing secreted metabolites. Notably, we did not observe increased mortality with higher concentrations of C. piscinae ESALQ6200 cells (3.5 × 10⁴ to 6.7 × 10⁹ cells/mL) or cell-free filtered supernatant (1%, 25%, 100%). Mortality rates observed in the cell treatments were 76.9% (6.7 × 10⁹ cells/mL), 75.2% (6.81 × 10⁷ cells/mL), 78.7% (5.14 × 10⁶ cells/mL), 77% (5.03 × 10⁵ cells/mL), and 74.5% (3.55 × 10⁴ cells/mL), while in the cell-free filtered supernatant treatments mortality rates were 72.9% (100%), 65.8% (25%), and 67% (1%). We believe these results may relate to effects on pest behavior, feeding inhibition, or quorum sensing in regulating virulence factors. Genomic analysis revealed several potential virulence factors, including chitinases, biosynthetic gene clusters associated with hydrogen cyanide and violacein production, and two pore-forming toxins. The digital DNA–DNA hybridization analysis indicated a high sequence identity of 96.7% between ESALQ6200 and C. piscinae (ASM2108337), well above the 70% threshold commonly applied for prokaryotic species delineation. In contrast, ESALQ6200 showed significant divergence from other Chromobacterium reference genomes, with only 51.8% sequence identity to C. subtsugae (ASM3632055). Additionally, we identified type three and six secretion systems commonly associated with virulence in various bacterial species. Our findings support the application of C. piscinae ESALQ6200 in the biological control of corn leafhoppers. Furthermore, the identification of novel Chromobacterium toxins and metabolites may facilitate the development of innovative transgenic approaches to address pest resistance to B. thuringiensis.

A Gram-staining-negative, aerobic, red-pigmented, motile with a single polar flagellum and rod-shaped bacterium, designated HNIBRBA332^T, was isolated from an aquaculture seawater sample. Phylogenetic analysis based 16S rRNA gene sequences revealed that strain HNIBRBA332^T belonged to the genus Hahella of the family Hahellaceae and shared 95.3–99.9% sequence similarities with Hahella species. Whole genome sequencing of strain HNIBRBA332^T revealed the genome size of 7.2Mbp and the G+C content of 59.5%. The HNIBRBA332^T genome shared 89.0% of average nucleotide identity and 36.6% of digital DNA-DNA hybridization values to the genome of Hahella chejuensis KCTC 2396^T, the type species of the genus. Genes involved in prodigiosin biosynthesis were identified in the genome. The strain contained C_17:0 10-methly, summed feature 3 (C_16:1 ω7c and/or C_16:1 ω6c), C_18:1 ω9c and C_20:4 ω6,9,12,15c as the major fatty acids and menaquinone-7 as the major respiratory quinone. The major polar lipids were phosphatidylglycerol, phosphatidylethanolamine, and two unidentified aminolipids. On the basis of phylogenetic and phenotypic characteristics, strain HNIBRBA332^T is considered to represent a novel species of the genus Hahella, for which the name Hahella aquimaris (type strain HNIBRBA332^T) sp. nov., is proposed.

Antimicrobial resistance (AMR) is considered one of the top 10 threats to global public health and development. Opportunistic bacteria such as Enterobacter cloacae have been reported to acquire resistance determinants, making them pathogenic reservoirs and a threat to health and most are on the path of becoming superbugs. These bacteria are commonly isolated along with pathogens from the stool and urine of patients diagnosed with typhoid fever, paratyphoid fever, gastroenteritis, urinary tract infection, and bloodstream infection or sepsis. The E. cloacae strain EC78 studied here is a metagenomic-assembled genome that was binned from sequenced data of a mixed bacterial culture taken from a patient diagnosed with gastroenteritis. The isolate was sequenced with Illumina Novaseq 6000 platform and analysed with various bioinformatics tools. EC78 origin strain contained antibiotics resistance genes, insertion sequences, phages, and virulence factors. Notable virulence genes responsible for immune modulation, efflux of drugs, invasion and nutritional virulence previously reported in Klebsiella pneumoniae., Escherichia coli, Shigella sp., and Salmonella sp. etc., were identified in EC78. Genetic characteristics that could contribute to pathogenicity, virulence, and antibiotic resistance, not commonly associated with E. cloacae, were identified in gut-domiciled EC78, suggesting the evolution of counter-therapy in the bacteria, probably driven by its quest for survival in an otherwise competitive biome.

Biofilm consists of populations of microorganisms encased in an extracellular matrix that the microbes produce themselves and adhere to either a living or non-living surface. When compared to planktonic cells, the intrinsic properties of cells within a film are distinct. There has been a lot of concern about biofilm resistance to antimicrobial drugs recently. It is already established that biofilm linked with soft tissues of livestock organisms can cause multitude of chronic and severe infections and that remains the leading underlying reason why antibiotics get ineffective in combating infections. Eliminating biofilms is an arduous task. Investigations on establishing novel and promising strategies in controlling infections associated with biofilms and fighting the challenge are continuing. To assess the efficacy of these techniques, however, there is necessity of further preclinical research and well-designed multi-center clinical trials. Here, an attempt has been made to explore the detailed mechanisms responsible for the development of biofilm-related drug- resistance as well as the recent advancements in therapeutics and effective strategies against microbial biofilms.

Infectious Bursal Disease Virus (IBDV) remains a significant threat to global poultry health due to its immunosuppressive effects and high mutation rate, which challenge existing vaccine strategies. This study presents a comprehensive computational analysis of the VP2 protein from Malaysian IBDV isolate UPM1432/2019 to elucidate its structural stability and antigenic potential. Phylogenetic analysis revealed evolutionary divergence among VP2 sequences, while physicochemical profiling demonstrated the protein’s high thermostability (aliphatic index: 98.77) and cellular stability (instability index: 17.55). Molecular dynamics simulations at 20 °C, 40 °C, 60 °C, and 80 °C showed progressive destabilization at elevated temperatures, indicated by increased RMSD, reduced hydrogen bonding, and higher solvent accessibility. Epitope prediction identified twelve linear and seven conformational B-cell epitopes, with several conserved, surface-exposed regions demonstrating high antigenicity. The most immunodominant conformational epitope (L168–E181) achieved a high ElliPro score of 0.903, indicating strong immune recognition potential. These findings highlight structurally stable and immunoreactive domains within VP2, offering valuable insights for the development of next-generation, thermostable epitope-based vaccines for effective IBDV control.