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Machine Learning–Driven SERS Nanoendoscopy and Optophysiology 机器学习驱动的 SERS 纳米内窥镜和光生理学
IF 8 2区 化学 Q1 Chemistry Pub Date : 2024-05-03 DOI: 10.1146/annurev-anchem-061622-012448
Malama Chisanga, Jean-Francois Masson
A frontier of analytical sciences is centered on the continuous measurement of molecules in or near cells, tissues, or organs, within the biological context in situ, where the molecular-level information is indicative of health status, therapeutic efficacy, and fundamental biochemical function of the host. Following the completion of the Human Genome Project, current research aims to link genes to functions of an organism and investigate how the environment modulates functional properties of organisms. New analytical methods have been developed to detect chemical changes with high spatial and temporal resolution, including minimally invasive surface-enhanced Raman scattering (SERS) nanofibers using the principles of endoscopy (SERS nanoendoscopy) or optical physiology (SERS optophysiology). Given the large spectral data sets generated from these experiments, SERS nanoendoscopy and optophysiology benefit from advances in data science and machine learning to extract chemical information from complex vibrational spectra measured by SERS. This review highlights new opportunities for intracellular, extracellular, and in vivo chemical measurements arising from the combination of SERS nanosensing and machine learning.
分析科学的一个前沿领域是在原位生物环境中对细胞、组织或器官内或附近的分子进行连续测量,这些分子水平的信息表明了宿主的健康状况、治疗效果和基本生化功能。人类基因组计划完成后,目前的研究旨在将基因与生物体的功能联系起来,并研究环境如何调节生物体的功能特性。目前已开发出新的分析方法,用于检测高空间和时间分辨率的化学变化,包括利用内窥镜(SERS 纳米内窥镜)或光学生理学(SERS 光学生理学)原理的微创表面增强拉曼散射(SERS)纳米纤维。鉴于这些实验产生了大量的光谱数据集,SERS 纳米内窥镜和光生理学受益于数据科学和机器学习的进步,可以从 SERS 测量的复杂振动光谱中提取化学信息。本综述强调了 SERS 纳米传感与机器学习相结合为细胞内、细胞外和体内化学测量带来的新机遇。
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引用次数: 0
Genetically Encoded Sensors for the In Vivo Detection of Neurochemical Dynamics. 用于体内神经化学动态检测的基因编码传感器
IF 8 2区 化学 Q1 Chemistry Pub Date : 2024-04-19 DOI: 10.1146/annurev-anchem-061522-044819
Yuqing Yang, Bohan Li, Yulong Li
The ability to measure dynamic changes in neurochemicals with high spatiotemporal resolution is essential for understanding the diverse range of functions mediated by the brain. We review recent advances in genetically encoded sensors for detecting neurochemicals and discuss their in vivo applications. For example, notable progress has been made with respect to sensors for second messengers such as cyclic adenosine monophosphate, enabling in vivo real-time monitoring of these messengers at single-cell and even subcellular resolution. Moreover, the emergence of highly sensitive sensors for neurotransmitters and neuromodulators has greatly accelerated the study of these signaling molecules in a wide variety of behavioral models using an array of powerful imaging techniques. Finally, we discuss the future direction of neurochemical sensors, including their ability to measure neurochemical concentrations and the potential for multiplex imaging.
以高时空分辨率测量神经化学物质动态变化的能力对于了解大脑介导的各种功能至关重要。我们回顾了用于检测神经化学物质的基因编码传感器的最新进展,并讨论了它们在体内的应用。例如,环磷酸腺苷等第二信使的传感器取得了显著进展,可以在单细胞甚至亚细胞分辨率下对这些信使进行体内实时监测。此外,神经递质和神经调节剂的高灵敏度传感器的出现,大大加快了利用一系列强大的成像技术在各种行为模型中对这些信号分子的研究。最后,我们将讨论神经化学传感器的未来发展方向,包括其测量神经化学物质浓度的能力和多重成像的潜力。
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引用次数: 0
Paper-Based Electrochemical (Bio)Sensors for the Detection of Target Analytes in Liquid, Aerosol, and Solid Samples 用于检测液体、气溶胶和固体样品中目标分析物的纸基电化学(生物)传感器
IF 8 2区 化学 Q1 Chemistry Pub Date : 2024-04-19 DOI: 10.1146/annurev-anchem-061522-034228
Noemi Colozza, Vincenzo Mazzaracchio, Fabiana Arduini
The last decade has been incredibly fruitful in proving the multifunctionality of paper for delivering innovative electrochemical (bio)sensors. The paper material exhibits unprecedented versatility to deal with complex liquid matrices and facilitate analytical detection in aerosol and solid phases. Such remarkable capabilities are feasible by exploiting the intrinsic features of paper, including porosity, capillary forces, and its easy modification, which allow for the fine designing of a paper device. In this review, we shed light on the most relevant paper-based electrochemical (bio)sensors published in the literature so far to identify the smart functional roles that paper can play to bridge the gap between academic research and real-world applications in the biomedical, environmental, agrifood, and security fields. Our analysis aims to highlight how paper's multifarious properties can be artfully harnessed for breaking the boundaries of the most classical applications of electrochemical (bio)sensors.
过去十年中,纸在提供创新电化学(生物)传感器方面取得了令人难以置信的丰硕成果。纸张材料表现出前所未有的多功能性,既能处理复杂的液体基质,又能促进气溶胶和固相的分析检测。利用纸张的固有特性,包括多孔性、毛细力和易于改性等特点,可以对纸张装置进行精细设计,从而实现上述卓越功能。在本综述中,我们将对迄今为止发表在文献中的最相关的纸基电化学(生物)传感器进行分析,以确定纸在生物医学、环境、农业食品和安全领域的学术研究和实际应用之间可以发挥的智能功能作用。我们的分析旨在强调如何巧妙地利用纸张的多种特性来打破电化学(生物)传感器最经典应用的界限。
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引用次数: 0
Portable Instrumentation for Ambient Ionization and Miniature Mass Spectrometers 用于环境电离和微型质谱仪的便携式仪器
IF 8 2区 化学 Q1 Chemistry Pub Date : 2024-04-19 DOI: 10.1146/annurev-anchem-061522-040824
Barry L. Smith, Thomas Hankinson, Simon Maher
We critically evaluate the current status of portable mass spectrometry (pMS), particularly where this aligns with ambient ionization. Assessing the field of pMS can be quite subjective, especially in relation to the portable aspects of design, deployment, and operation. In this review, we discuss what it means to be portable and introduce a set of criteria by which pMS and ambient ionization sources can be assessed. Moreover, we consider the recent literature in terms of the most popular and significant advances in portable instrumentation for ambient ionization and miniature mass spectrometers. Finally, emerging trends and exciting future prospects are discussed and some recommendations are offered.
我们对便携式质谱仪(pMS)的现状进行了严格评估,尤其是在与环境电离相一致的方面。对便携式质谱仪领域的评估可能相当主观,尤其是在设计、部署和操作的便携性方面。在本综述中,我们将讨论便携的含义,并介绍一套可用于评估 pMS 和环境电离源的标准。此外,我们还从环境电离和微型质谱仪的便携式仪器中最流行和最重要的进展方面对近期文献进行了研究。最后,我们讨论了新出现的趋势和令人振奋的未来前景,并提出了一些建议。
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引用次数: 0
Advances in the Development of Bacterial Bioluminescence Imaging 细菌生物发光成像技术的发展进展
IF 8 2区 化学 Q1 Chemistry Pub Date : 2024-04-19 DOI: 10.1146/annurev-anchem-061622-034229
Tianyu Jiang, Xiaoyu Bai, Minyong Li
Bioluminescence imaging (BLI) is a powerful method for visualizing biological processes and tracking cells. Engineered bioluminescent bacteria that utilize luciferase-catalyzed biochemical reactions to generate luminescence have become useful analytical tools for in vitro and in vivo bacterial imaging. Accordingly, this review initially introduces the development of engineered bioluminescent bacteria that use different luciferase–luciferin pairs as analytical tools and their applications for in vivo BLI, including real-time bacterial tracking of infection, probiotic investigation, tumor-targeted therapy, and drug screening. Applications of engineered bioluminescent bacteria as whole-cell biosensors for sensing biological changes in vitro and in vivo are then discussed. Finally, we review the optimizations and future directions of bioluminescent bacteria for imaging. This review aims to provide fundamental insights into bacterial BLI and highlight the potential development of this technique in the future.
生物发光成像(BLI)是一种可视化生物过程和追踪细胞的强大方法。利用荧光素酶催化的生化反应产生发光的工程生物发光细菌已成为体外和体内细菌成像的有用分析工具。因此,本综述初步介绍了使用不同荧光素酶-荧光素对作为分析工具的工程生物发光细菌的发展及其在体内 BLI 中的应用,包括实时细菌感染跟踪、益生菌研究、肿瘤靶向治疗和药物筛选。然后讨论了工程生物发光细菌作为全细胞生物传感器在体外和体内感知生物变化的应用。最后,我们回顾了用于成像的生物发光细菌的优化和未来发展方向。本综述旨在提供有关细菌 BLI 的基本见解,并强调该技术在未来的潜在发展。
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引用次数: 0
Integrated In-Plane Nanofluidic Devices for Resistive-Pulse Sensing 用于电阻式脉冲传感的集成平面内纳米流体器件
IF 8 2区 化学 Q1 Chemistry Pub Date : 2024-04-12 DOI: 10.1146/annurev-anchem-061622-030223
Tanner W. Young, Michael P. Kappler, Ethan D. Call, Quintin J. Brown, Stephen C. Jacobson
Single-entity (or digital) measurements enhance sensitivity (10- to 100-fold improvement) and uncover heterogeneity within a population (one event in 100 to 10,000). Many biological systems are significantly influenced by rare or infrequent events, and determining what species is present, in what quantity, and role of that species is critically important to unraveling many questions. To develop these measurement systems, resistive-pulse sensing is used as a label-free, single-particle detection technique and can be combined with a range of functional elements, e.g., mixers, reactors, filters, separators, and pores. Virtually, any two-dimensional layout of the micro- and nanofluidic conduits can be envisioned, designed, and fabricated in the plane of the device. Multiple nanopores in series lead to higher-precision measurements of particle size, shape, and charge, and reactions coupled directly with the particle-size measurements improve temporal response. Moreover, other detection techniques, e.g., fluorescence, are highly compatible with the in-plane format. These integrated in-plane nanofluidic devices expand the toolbox of what is possible with single-entity measurements.
单实体(或数字)测量可提高灵敏度(提高 10 到 100 倍),并揭示种群内的异质性(100 到 10,000 个事件中才有一个事件)。许多生物系统都会受到罕见或不常见事件的重大影响,因此确定存在哪些物种、数量多少以及该物种的作用对于解开许多问题至关重要。为了开发这些测量系统,电阻脉冲传感技术被用作一种无标记的单粒子检测技术,并可与一系列功能元件(如混合器、反应器、过滤器、分离器和孔隙)相结合。实际上,微流体和纳米流体导管的任何二维布局都可以在设备的平面上进行设想、设计和制造。多个纳米孔串联可实现更高精度的粒度、形状和电荷测量,与粒度测量直接耦合的反应可改善时间响应。此外,荧光等其他检测技术也与平面内格式高度兼容。这些集成的面内纳米流体设备扩展了单实体测量的工具箱。
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引用次数: 0
In Situ Electrochemical Atomic Force Microscopy: From Interfaces to Interphases 原位电化学原子力显微镜:从界面到相间
IF 8 2区 化学 Q1 Chemistry Pub Date : 2024-04-11 DOI: 10.1146/annurev-anchem-061422-020428
Wei-Wei Wang, Hao Yan, Yu Gu, Jiawei Yan, Bing-Wei Mao
The electrochemical interface formed between an electrode and an electrolyte significantly affects the rate and mechanism of the electrode reaction through its structure and properties, which vary across the interface. The scope of the interface has been expanded, along with the development of energy electrochemistry, where a solid-electrolyte interphase may form on the electrode and the active materials change properties near the surface region. Developing a comprehensive understanding of electrochemical interfaces and interphases necessitates three-dimensional spatial resolution characterization. Atomic force microscopy (AFM) offers advantages of imaging and long-range force measurements. Here we assess the capabilities of AFM by comparing the force curves of different regimes and various imaging modes for in situ characterizing of electrochemical interfaces and interphases. Selected examples of progress on work related to the structures and processes of electrode surfaces, electrical double layers, and lithium battery systems are subsequently illustrated. Finally, this review provides perspectives on the future development of electrochemical AFM.
电极与电解质之间形成的电化学界面通过其结构和性质对电极反应的速率和机理产生重大影响,而这些结构和性质在界面上各不相同。随着能源电化学的发展,界面的范围也在不断扩大,电极上可能会形成固体-电解质间相,活性材料在表面区域附近的性质也会发生变化。要全面了解电化学界面和间相,就必须进行三维空间分辨率表征。原子力显微镜(AFM)具有成像和远距离力测量的优势。在此,我们通过比较不同体系的力曲线和各种成像模式来评估原子力显微镜在电化学界面和相间层原位表征方面的能力。随后,我们将举例说明与电极表面、电双层和锂电池系统的结构和过程有关的工作进展。最后,本综述对电化学原子力显微镜的未来发展进行了展望。
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引用次数: 0
In Vivo Assays for Amyloid-Related Diseases 淀粉样蛋白相关疾病的体内试验
IF 8 2区 化学 Q1 Chemistry Pub Date : 2024-04-10 DOI: 10.1146/annurev-anchem-061622-023326
Alba Espargaró, Irene Álvarez-Berbel, Maria Antònia Busquets, Raimon Sabate
Amyloid-related diseases, such as Alzheimer's and Parkinson's disease, are devastating conditions caused by the accumulation of abnormal protein aggregates known as amyloid fibrils. While assays involving animal models are essential for understanding the pathogenesis and developing therapies, a wide array of standard analytical techniques exists to enhance our understanding of these disorders. These techniques provide valuable information on the formation and propagation of amyloid fibrils, as well as the pharmacokinetics and pharmacodynamics of candidate drugs. Despite ethical concerns surrounding animal use, animal models remain vital tools in the search for treatments. Regardless of the specific animal model chosen, the analytical methods used are usually standardized. Therefore, the main objective of this review is to categorize and outline the primary analytical methods used in in vivo assays for amyloid-related diseases, highlighting their critical role in furthering our understanding of these disorders and developing effective therapies.
淀粉样蛋白相关疾病,如阿尔茨海默氏症和帕金森氏症,是由被称为淀粉样蛋白纤维的异常蛋白质聚集体堆积引起的破坏性疾病。虽然动物模型检测对于了解发病机理和开发治疗方法至关重要,但现有的各种标准分析技术也能加深我们对这些疾病的了解。这些技术为淀粉样纤维的形成和传播以及候选药物的药代动力学和药效学提供了宝贵的信息。尽管存在使用动物的伦理问题,但动物模型仍然是寻找治疗方法的重要工具。无论选择哪种特定的动物模型,所使用的分析方法通常都是标准化的。因此,本综述的主要目的是对用于淀粉样蛋白相关疾病体内检测的主要分析方法进行分类和概述,强调这些方法在加深我们对这些疾病的了解和开发有效疗法方面的关键作用。
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引用次数: 0
High-Specificity Imaging Mass Spectrometry 高特异性成像质谱仪
IF 8 2区 化学 Q1 Chemistry Pub Date : 2024-04-10 DOI: 10.1146/annurev-anchem-083023-024546
Madeline E. Colley, Allison B. Esselman, Claire F. Scott, Jeffrey M. Spraggins
Imaging mass spectrometry (IMS) enables highly multiplexed, untargeted tissue mapping for a broad range of molecular classes, facilitating in situ biological discovery. Yet, challenges persist in molecular specificity, which is the ability to discern one molecule from another, and spatial specificity, which is the ability to link untargeted imaging data to specific tissue features. Instrumental developments have dramatically improved IMS spatial resolution, allowing molecular observations to be more readily associated with distinct tissue features across spatial scales, ranging from larger anatomical regions to single cells. High-performance mass analyzers and systems integrating ion mobility technologies are also becoming more prevalent, further improving molecular coverage and the ability to discern chemical identity. This review provides an overview of recent advancements in high-specificity IMS that are providing critical biological context to untargeted molecular imaging, enabling integrated analyses, and addressing advanced biomedical research applications.
成像质谱(IMS)可对多种分子类别进行高度多路复用的非靶向组织制图,促进原位生物发现。然而,在分子特异性和空间特异性方面仍然存在挑战,分子特异性是指区分一种分子和另一种分子的能力,空间特异性是指将非靶向成像数据与特定组织特征联系起来的能力。仪器的发展极大地提高了 IMS 的空间分辨率,使分子观察结果更容易与不同空间尺度(从较大的解剖区域到单细胞)的不同组织特征联系起来。集成离子迁移技术的高性能质量分析仪和系统也越来越普及,进一步提高了分子覆盖范围和鉴别化学特征的能力。本综述概述了高特异性 IMS 的最新进展,这些进展为非靶向分子成像提供了重要的生物背景,实现了综合分析,并解决了先进的生物医学研究应用问题。
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引用次数: 0
An Electrochemical Perspective on Reaction Acceleration in Droplets 从电化学角度看液滴中的反应加速度
IF 8 2区 化学 Q1 Chemistry Pub Date : 2024-04-10 DOI: 10.1146/annurev-anchem-061622-030919
Kathryn J. Vannoy, Myles Quinn Edwards, Christophe Renault, Jeffrey E. Dick
Analytical techniques operating at the nanoscale introduce confinement as a tool at our disposal. This review delves into the phenomenon of accelerated reactivity within micro- and nanodroplets. A decade of accelerated reactivity observations was succeeded by several years of fundamental studies aimed at mechanistic enlightenment. Herein, we provide a brief historical context for rate enhancement in micro- and nanodroplets and summarize the mechanisms that have been proposed to contribute to such extraordinary reactivity. We highlight recent electrochemical reports that make use of restricted mass transfer to enhance electrochemical reactions and/or quantitatively measure reaction rates within droplet-confined electrochemical cells. A comprehensive approach to nanodroplet reactivity is paramount to understanding how nature takes advantage of these systems to provide life on Earth and, in turn, how to harness the full potential of such systems.
在纳米尺度上运行的分析技术引入了约束技术,使其成为我们可以利用的工具。本综述将深入探讨微滴和纳米滴内的加速反应现象。在进行了十年的加速反应观察之后,我们又进行了数年的基础研究,旨在从机理上对这一现象进行揭示。在此,我们简要介绍了微滴和纳米滴中速率增强的历史背景,并总结了导致这种非凡反应性的机制。我们重点介绍了近期的电化学研究报告,这些报告利用受限传质来增强电化学反应和/或定量测量液滴封闭电化学电池中的反应速率。全面了解纳米液滴的反应性对于理解自然界如何利用这些系统提供地球上的生命,以及反过来如何利用这些系统的全部潜力至关重要。
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引用次数: 0
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Annual Review of Analytical Chemistry
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