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Analysis of RNA and Its Modifications 分析 RNA 及其修饰
IF 8 2区 化学 Q1 Chemistry Pub Date : 2024-04-10 DOI: 10.1146/annurev-anchem-061622-125954
Cassandra Herbert, Satenik Valesyan, Jennifer Kist, Patrick A. Limbach
Ribonucleic acids (RNAs) are key biomolecules responsible for the transmission of genetic information, the synthesis of proteins, and modulation of many biochemical processes. They are also often the key components of viruses. Synthetic RNAs or oligoribonucleotides are becoming more widely used as therapeutics. In many cases, RNAs will be chemically modified, either naturally via enzymatic systems within a cell or intentionally during their synthesis. Analytical methods to detect, sequence, identify, and quantify RNA and its modifications have demands that far exceed requirements found in the DNA realm. Two complementary platforms have demonstrated their value and utility for the characterization of RNA and its modifications: mass spectrometry and next-generation sequencing. This review highlights recent advances in both platforms, examines their relative strengths and weaknesses, and explores some alternative approaches that lie at the horizon.
核糖核酸(RNA)是负责传递遗传信息、合成蛋白质和调节许多生化过程的关键生物大分子。它们通常也是病毒的关键成分。合成 RNA 或寡核苷酸正越来越广泛地用作治疗药物。在许多情况下,RNA 会通过细胞内的酶系统自然或在合成过程中有意进行化学修饰。检测、测序、识别和量化 RNA 及其修饰的分析方法的要求远远超过 DNA 领域的要求。质谱法和新一代测序法这两种互补平台已经证明了它们在表征 RNA 及其修饰方面的价值和实用性。这篇综述重点介绍了这两种平台的最新进展,研究了它们的相对优缺点,并探讨了一些即将出现的替代方法。
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引用次数: 0
Raman and Surface-Enhanced Raman Scattering Detection in Flowing Solutions for Complex Mixture Analysis 流动溶液中的拉曼和表面增强拉曼散射检测用于复杂混合物分析
IF 8 2区 化学 Q1 Chemistry Pub Date : 2024-02-21 DOI: 10.1146/annurev-anchem-061522-035207
Monika Poonia, Courtney J. Morder, Hannah C. Schorr, Zachary D. Schultz
Raman scattering provides a chemical-specific and label-free method for identifying and quantifying molecules in flowing solutions. This review provides a comprehensive examination of the application of Raman spectroscopy and surface-enhanced Raman scattering (SERS) to flowing liquid samples. We summarize developments in online and at-line detection using Raman and SERS analysis, including the design of microfluidic devices, the development of unique SERS substrates, novel sampling interfaces, and coupling these approaches to fluid-based chemical separations (e.g., chromatography and electrophoresis). The article highlights the challenges and limitations associated with these techniques and provides examples of their applications in a variety of fields, including chemistry, biology, and environmental science. Overall, this review demonstrates the utility of Raman and SERS for analysis of complex mixtures and highlights the potential for further development and optimization of these techniques.Expected final online publication date for the Annual Review of Analytical Chemistry, Volume 17 is May 2024. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
拉曼散射为识别和量化流动溶液中的分子提供了一种化学特异性的无标记方法。本综述全面探讨了拉曼光谱和表面增强拉曼散射(SERS)在流动液体样品中的应用。我们总结了利用拉曼和 SERS 分析进行在线和在线检测的发展情况,包括微流体设备的设计、独特 SERS 基底的开发、新型采样界面,以及将这些方法与基于流体的化学分离(如色谱法和电泳法)相结合。文章强调了与这些技术相关的挑战和局限性,并举例说明了这些技术在化学、生物和环境科学等多个领域的应用。总之,这篇综述展示了拉曼和 SERS 在分析复杂混合物方面的实用性,并强调了进一步开发和优化这些技术的潜力。《分析化学年度综述》第 17 卷的最终在线出版日期预计为 2024 年 5 月。修订后的预计日期请参见 http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 0
Oxygen Measurement in Microdevices. 微型设备中的氧测量。
IF 8 2区 化学 Q1 Chemistry Pub Date : 2022-06-13 DOI: 10.1146/annurev-anchem-061020-111458
S. Grist, K. Bennewith, K. Cheung
Oxygen plays a fundamental role in respiration and metabolism, and quantifying oxygen levels is essential in many environmental, industrial, and research settings. Microdevices facilitate the study of dynamic, oxygen-dependent effects in real time. This review is organized around the key needs for oxygen measurement in microdevices, including integrability into microfabricated systems; sensor dynamic range and sensitivity; spatially resolved measurements to map oxygen over two- or three-dimensional regions of interest; and compatibility with multimodal and multianalyte measurements. After a brief overview of biological readouts of oxygen, followed by oxygen sensor types that have been implemented in microscale devices and sensing mechanisms, this review presents select recent applications in organs-on-chip in vitro models and new sensor capabilities enabling oxygen microscopy, bioprocess manufacturing, and pharmaceutical industries. With the advancement of multiplexed, interconnected sensors and instruments and integration with industry workflows, intelligent microdevice-sensor systems including oxygen sensors will have further impact in environmental science, manufacturing, and medicine.
氧气在呼吸和代谢中起着重要作用,在许多环境、工业和研究环境中,量化氧气水平至关重要。微型设备有助于实时研究动态氧依赖效应。这篇综述是围绕微型设备中氧气测量的关键需求组织的,包括微型制造系统的可积性;传感器动态范围和灵敏度;在二维或三维感兴趣区域上绘制氧气图的空间分辨测量;以及与多模式和多分析细胞测量的兼容性。在简要概述了氧气的生物读数,以及已在微型设备和传感机制中实现的氧气传感器类型之后,本综述介绍了芯片上器官体外模型的最新应用,以及实现氧气显微镜、生物工艺制造和制药行业的新传感器功能。随着多路复用、互连传感器和仪器的发展以及与行业工作流程的集成,包括氧传感器在内的智能微型设备传感器系统将在环境科学、制造业和医学领域产生进一步的影响。
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引用次数: 2
Overcoming Major Barriers to Developing Successful Sensors for Practical Applications Using Functional Nucleic Acids. 克服主要障碍,开发成功的传感器用于实际应用的功能核酸。
IF 8 2区 化学 Q1 Chemistry Pub Date : 2022-02-25 DOI: 10.1146/annurev-anchem-061020-104216
Jingjing Zhang, Tian Lan, Yi Lu
For many years, numerous efforts have been focused on the development of sensitive, selective, and practical sensors for environmental monitoring, food safety, and medical diagnostic applications. However, the transition from innovative research to commercial success is relatively sparse. In this review, we identify several barriers to developing successful sensors for practical applications, including the lack of general methods to (a) generate receptors for a wide range of targets, (b) improve sensor selectivity to overcome interferences, (c) transduce the selective binding to different optical, electrochemical, and other signals, and (d) tune dynamic range to match thresholds of detection required for different targets. We then summarize solutions to overcome these barriers using sensors based on functional nucleic acids that include DNAzymes, aptamers, and aptazymes and how these sensors are coupled to widely available measurement devices to expand their capabilities and lower the barrier for their practical applications in the field and point-of-care settings. Expected final online publication date for the Annual Review of Analytical Chemistry Volume 15 is June 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
多年来,人们一直致力于开发敏感、选择性和实用的传感器,用于环境监测、食品安全和医疗诊断应用。然而,从创新研究到商业成功的转变相对较少。在这篇综述中,我们确定了开发成功的实际应用传感器的几个障碍,包括缺乏一般方法来(a)为广泛的目标产生受体,(b)提高传感器的选择性以克服干扰,(c)将选择性结合转移到不同的光学,电化学和其他信号,以及(d)调整动态范围以匹配不同目标所需的检测阈值。然后,我们总结了使用基于功能核酸(包括DNAzymes,适体体和适体酶)的传感器来克服这些障碍的解决方案,以及如何将这些传感器与广泛可用的测量设备耦合以扩展其功能并降低其在现场和护理点环境中的实际应用障碍。预计《分析化学年鉴》第15卷的最终在线出版日期为2022年6月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 5
Analysis of Mitochondria by Single-Organelle Resolution. 线粒体的单细胞器分辨率分析。
IF 8 2区 化学 Q1 Chemistry Pub Date : 2022-02-18 DOI: 10.1146/annurev-anchem-061020-111722
A. Harbauer, A. Schneider, D. Wohlleber
Cellular organelles are highly specialized compartments with distinct functions. With the increasing resolution of detection methods, it is becoming clearer that same organelles may have different functions or properties not only within different cell populations of a tissue but also within the same cell. Dysfunction or altered function affects the organelle itself and may also lead to malignancies or undesirable cell death. To understand cellular function or dysfunction, it is therefore necessary to analyze cellular components at the single-organelle level. Here, we review the recent advances in analyzing cellular function at single-organelle resolution using high-parameter flow cytometry or multicolor confocal microscopy. We focus on the analysis of mitochondria, as they are organelles at the crossroads of various cellular signaling pathways and functions. However, most of the applied methods/technologies are transferable to any other organelle, such as the endoplasmic reticulum, lysosomes, or peroxisomes. Expected final online publication date for the Annual Review of Analytical Chemistry Volume 15 is June 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
细胞器是具有不同功能的高度特化的隔室。随着检测方法分辨率的提高,越来越清楚的是,相同的细胞器不仅在组织的不同细胞群内,而且在同一细胞内可能具有不同的功能或特性。功能障碍或功能改变会影响细胞器本身,也可能导致恶性肿瘤或不良细胞死亡。因此,为了了解细胞功能或功能障碍,有必要在单个细胞器水平上分析细胞成分。在此,我们综述了使用高参数流式细胞术或多色共聚焦显微镜以单细胞器分辨率分析细胞功能的最新进展。我们专注于线粒体的分析,因为它们是处于各种细胞信号通路和功能十字路口的细胞器。然而,大多数应用的方法/技术都可以转移到任何其他细胞器,如内质网、溶酶体或过氧化物酶体。《分析化学年度评论》第15卷预计最终在线出版日期为2022年6月。请参阅http://www.annualreviews.org/page/journal/pubdates用于修订估算。
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引用次数: 3
Developing FRET Networks for Sensing. 开发FRET网络传感。
IF 8 2区 化学 Q1 Chemistry Pub Date : 2022-02-17 DOI: 10.1146/annurev-anchem-061020-014925
W. R. Algar, Katherine D. Krause
Förster resonance energy transfer (FRET) is a widely used fluorescence-based sensing mechanism. To date, most implementations of FRET sensors have relied on a discrete donor-acceptor pair for detection of each analytical target. FRET networks are an emerging concept in which target recognition perturbs a set of interconnected FRET pathways between multiple emitters. Here, we review the energy transfer topologies and scaffold materials for FRET networks, propose a general nomenclature, and qualitatively summarize the dynamics of the competitive, sequential, homoFRET, and heteroFRET pathways that constitute FRET networks. Implementations of FRET networks for sensing are also described, including concentric FRET probes, other single-vector multiplexing, and logic gates and switches. Unresolved questions and future research directions for current systems are discussed, as are potential but currently unexplored applications of FRET networks in sensing. Expected final online publication date for the Annual Review of Analytical Chemistry Volume 15 is June 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
Förster共振能量转移(FRET)是一种广泛使用的基于荧光的传感机制。迄今为止,FRET传感器的大多数实施方式都依赖于离散的供体-受体对来检测每个分析靶标。FRET网络是一个新兴的概念,其中目标识别干扰多个发射器之间的一组互连FRET通路。在这里,我们回顾了FRET网络的能量转移拓扑结构和支架材料,提出了一个通用的命名法,并定性地总结了构成FRET网络中竞争性、顺序性、同源性和异质性FRET途径的动力学。还描述了用于感测的FRET网络的实现,包括同心FRET探针、其他单矢量复用以及逻辑门和开关。讨论了当前系统尚未解决的问题和未来的研究方向,以及FRET网络在传感中的潜在但目前尚未探索的应用。《分析化学年度评论》第15卷预计最终在线出版日期为2022年6月。请参阅http://www.annualreviews.org/page/journal/pubdates用于修订估算。
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引用次数: 9
Analytical Chemistry Throughout This Solar System. 整个太阳系的分析化学。
IF 8 2区 化学 Q1 Chemistry Pub Date : 2022-02-17 DOI: 10.1146/annurev-anchem-061020-125416
K. M. Seaton, M. Cable, A. Stockton
One of the greatest and most long-lived scientific pursuits of humankind has been to discover and study the planetary objects comprising our solar system. Information gained from solar system observations, via both remote sensing and in situ measurements, is inherently constrained by the analytical (often chemical) techniques we employ in these endeavors. The past 50 years of planetary science missions have resulted in immense discoveries within and beyond our solar system, enabled by state-of-the-art analytical chemical instrument suites on board these missions. In this review, we highlight and discuss some of the most impactful analytical chemical instruments flown on planetary science missions within the last 20 years, including analytical techniques ranging from remote spectroscopy to in situ chemical separations. We first highlight mission-based remote and in situ spectroscopic techniques, followed by in situ separation and mass spectrometry analyses. The results of these investigations are discussed, and their implications examined, from worlds as close as Venus and familiar as Mars to as far away and exotic as Titan. Instruments currently in development for planetary science missions in the near future are also discussed, as are the promises their capabilities bring. Analytical chemistry is critical to understanding what lies beyond Earth in our solar system, and this review seeks to highlight how questions, analytical tools, and answers have intersected over the past 20 years and their implications for the near future. Expected final online publication date for the Annual Review of Analytical Chemistry Volume 15 is June 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
人类最伟大、最长久的科学追求之一就是发现和研究构成我们太阳系的行星。通过遥感和实地测量从太阳系观测中获得的信息,本质上受到我们在这些努力中使用的分析(通常是化学)技术的限制。在过去的50年里,行星科学任务在我们的太阳系内外取得了巨大的发现,这些发现是由这些任务上最先进的分析化学仪器套件实现的。在这篇综述中,我们重点介绍和讨论了过去20年来在行星科学任务中飞行的一些最具影响力的分析化学仪器,包括从远程光谱到原位化学分离的分析技术。我们首先强调基于任务的远程和原位光谱技术,其次是原位分离和质谱分析。从近如金星、熟悉如火星的世界,到遥远如土卫六的世界,这些研究的结果被讨论,其含义也被检验。在不久的将来,为行星科学任务目前正在开发的仪器也被讨论,以及它们的能力带来的承诺。分析化学对于了解地球以外的太阳系是至关重要的,这篇综述旨在强调过去20年来问题、分析工具和答案是如何交叉的,以及它们对不久的将来的影响。预计《分析化学年鉴》第15卷的最终在线出版日期为2022年6月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 1
Probing and Visualizing Interfacial Charge at Surfaces in Aqueous Solution. 探测和可视化水溶液中表面的界面电荷。
IF 8 2区 化学 Q1 Chemistry Pub Date : 2022-02-08 DOI: 10.1146/annurev-anchem-121521-122615
G. Caniglia, Gozde Tezcan, Gabriel N. Meloni, P. Unwin, C. Kranz
Surface charge density and distribution play an important role in almost all interfacial processes, influencing, for example, adsorption, colloidal stability, functional material activity, electrochemical processes, corrosion, nanoparticle toxicity, and cellular processes such as signaling, absorption, and adhesion. Understanding the heterogeneity in, and distribution of, surface and interfacial charge is key to elucidating the mechanisms underlying reactivity, the stability of materials, and biophysical processes. Atomic force microscopy (AFM) and scanning ion conductance microscopy (SICM) are highly suitable for probing the material/electrolyte interface at the nanoscale through recent advances in probe design, significant instrumental (hardware and software) developments, and the evolution of multifunctional imaging protocols. Here, we assess the capability of AFM and SICM for surface charge mapping, covering the basic underpinning principles alongside experimental considerations. We illustrate and compare the use of AFM and SICM for visualizing surface and interfacial charge with examples from materials science, geochemistry, and the life sciences. Expected final online publication date for the Annual Review of Analytical Chemistry Volume 15 is June 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
表面电荷密度和分布在几乎所有的界面过程中都起着重要作用,例如影响吸附、胶体稳定性、功能材料活性、电化学过程、腐蚀、纳米颗粒毒性以及细胞过程,如信号传导、吸收和粘附。了解表面和界面电荷的不均匀性及其分布是阐明反应性、材料稳定性和生物物理过程的潜在机制的关键。原子力显微镜(AFM)和扫描离子电导显微镜(SICM)非常适合通过探针设计的最新进展、重要的仪器(硬件和软件)开发以及多功能成像协议的发展来探测纳米级的材料/电解质界面。在这里,我们评估了AFM和SICM用于表面电荷映射的能力,涵盖了基本的基础原理和实验考虑。我们通过材料科学、地球化学和生命科学的例子,说明并比较了AFM和SICM在可视化表面和界面电荷方面的应用。《分析化学年度评论》第15卷预计最终在线出版日期为2022年6月。请参阅http://www.annualreviews.org/page/journal/pubdates用于修订估算。
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引用次数: 6
Emerging Optical Microscopy Techniques for Electrochemistry. 新兴的电化学光学显微镜技术。
IF 8 2区 化学 Q1 Chemistry Pub Date : 2021-09-24 DOI: 10.1146/annurev-anchem-061020-015943
Jean‐François Lemineur, Hui Wang, Wei Wang, F. Kanoufi
An optical microscope is probably the most intuitive, simple, and commonly used instrument to observe objects and discuss behaviors through images. Although the idea of imaging electrochemical processes operando by optical microscopy was initiated 40 years ago, it was not until significant progress was made in the last two decades in advanced optical microscopy or plasmonics that it could become a mainstream electroanalytical strategy. This review illustrates the potential of different optical microscopies to visualize and quantify local electrochemical processes with unprecedented temporal and spatial resolution (below the diffraction limit), up to the single object level with subnanoparticle or single-molecule sensitivity. Developed through optically and electrochemically active model systems, optical microscopy is now shifting to materials and configurations focused on real-world electrochemical applications. Expected final online publication date for the Annual Review of Analytical Chemistry Volume 15 is June 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
光学显微镜可能是最直观、最简单、最常用的通过图像来观察物体和讨论行为的仪器。尽管利用光学显微镜对电化学过程进行成像的想法早在40年前就提出了,但直到近二十年来,在先进的光学显微镜或等离子体动力学方面取得了重大进展,它才成为主流的电分析策略。这篇综述说明了不同光学显微镜的潜力,以前所未有的时间和空间分辨率(低于衍射极限)可视化和量化局部电化学过程,达到亚纳米颗粒或单分子灵敏度的单个物体水平。通过光学和电化学活性模型系统的发展,光学显微镜现在转移到材料和配置集中在现实世界的电化学应用。预计《分析化学年鉴》第15卷的最终在线出版日期为2022年6月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 20
New Functionalities for Paper-Based Sensors Lead to Simplified User Operation, Lower Limits of Detection, and New Applications. 纸张传感器的新功能简化了用户操作,降低了检测极限,并带来了新的应用。
IF 8 2区 化学 Q1 Chemistry Pub Date : 2016-06-15 DOI: 10.1146/annurev-anchem-071015-041605
J. Cunningham, P. R. DeGregory, R. Crooks
In the last decade, paper analytical devices (PADs) have evolved into sophisticated yet simple sensors with biological and environmental applications in the developed and developing world. The focus of this review is the technological improvements that have over the past five years increased the applicability of PADs to real-world problems. Specifically, this review reports on advances in sample processing, fluid flow control, signal amplification, and component integration. Throughout, we have sought to emphasize advances that retain the main virtues of PADs: low cost, portability, and simplicity.
在过去的十年中,纸张分析设备(pad)已经发展成为复杂而简单的传感器,在发达国家和发展中国家的生物和环境应用。本综述的重点是在过去五年中提高了pad对现实问题的适用性的技术改进。具体来说,本文综述了样品处理、流体流动控制、信号放大和元件集成方面的进展。在整个过程中,我们力求强调的进步保留了pad的主要优点:低成本、便携性和简单性。
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引用次数: 87
期刊
Annual Review of Analytical Chemistry
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