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Hydroperiod of temporary ponds threats amphibian recruitment in Mediterranean environments 临时池塘的水期威胁着地中海环境中两栖动物的招募
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2023-07-11 DOI: 10.1163/15685381-bja10146
Amalia Segura, G. Palomar
Climate change threatens amphibians because they depend on water availability. The amount of time that a pond is filled with water – the hydroperiod – may play an important role in larval development and recruitment. Nevertheless it is usually not taken into account when predicting future species trends. We evaluated the role of the hydroperiod in the abundance of five amphibian species in temporal ponds of a Moroccan forest during a seven-year period. Particularly, we characterized the ponds and compared the climatic variables affecting our system with the previous eight-year period. We tested the relationship between rainfall and hydroperiod, and we identified the best predictor of amphibian abundance. Our data showed that the last seven years were drier than the previous eight, being three of them so dry that none of the amphibian species bred successfully in those seasons. We demonstrated that hydroperiod was the best predictor of the abundance of amphibian species and affected the amphibian community composition. The rainfall was correlated with the hydroperiod and the number of ponds filled. Species with long larval periods such as the endangered Moroccan spadefoot toad and the sharp ribbed newt might be more vulnerable to climate change since they need longer hydroperiods to develop. However, widespread species with shorter hydroperiods such as the Mauretanian toad or the stripeless tree frog might be favoured. In order to predict accurately amphibian species trend under climate change scenarios and to develop adequate conservation strategies, hydroperiod should be considered in both the models and mitigation actions.
气候变化威胁着两栖动物,因为它们依赖于水的供应。池塘充满水的时间——水周期——可能在幼虫的发育和招募中起着重要作用。然而,在预测未来的物种趋势时,通常不会考虑到这一点。我们在7年的时间里评估了水期在摩洛哥森林临时池塘中五种两栖动物丰度中的作用。特别是,我们描述了池塘的特征,并将影响我们系统的气候变量与过去8年的气候变量进行了比较。我们测试了降雨和水期之间的关系,并确定了两栖动物丰度的最佳预测指标。我们的数据显示,最近7年比前8年更干燥,其中有3年非常干燥,以至于没有一种两栖动物在那些季节成功繁殖。研究表明,水期是两栖动物物种丰度的最佳预测因子,并影响两栖动物群落组成。降雨与水期和蓄水池数相关。幼虫期较长的物种,如濒危的摩洛哥蛛足蟾蜍和尖肋蝾螈,可能更容易受到气候变化的影响,因为它们需要更长的水期来发育。然而,水周期较短的广泛分布的物种,如毛里塔尼亚蟾蜍或无条纹树蛙,可能会受到青睐。为了准确预测气候变化情景下两栖动物的物种趋势并制定适当的保护策略,在模型和减缓行动中都应考虑水期。
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引用次数: 0
COI barcoding provides reliable species identification and pinpoints cryptic diversity in Western Palearctic amphibians COI条形码提供了可靠的物种识别,并精确定位了西北极两栖动物的神秘多样性
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2023-07-11 DOI: 10.1163/15685381-bja10148
G. Velo‐Antón, E. Chambers, N. Poyarkov, D. Canestrelli, Roberta Bisconti, B. Naumov, María José Fernández Benéitez, A. Borisenko, Í. Martínez‐Solano
Assembling DNA barcode reference libraries for various taxonomic groups allows researchers to use metabarcoding or environmental DNA approaches to gain a rapid understanding of diversity in given environments. However, our ability to use reference libraries depends on how accurately DNA barcodes are able to recover taxonomic boundaries and identify species, which is rarely considered. We constructed an extensive COI barcoding library for amphibians of the Western Palearctic and successfully recovered barcodes from 60 urodele and 73 anuran species (representing 94% and 98% of the nominal anuran and urodele species in the Western Palearctic, respectively), covering the intraspecific diversity of the majority of species in this region. We tested the effectiveness of our assembled DNA barcode dataset for species identification using barcoding gap, efficiency analyses, and two phylogenetic species delimitation methods. We obtained DNA barcodes for 1251 specimens (691 anurans and 560 urodeles) with a high success rate (92-96%) of species identification. The absence of a barcoding gap in a number of samples was linked to species misidentifications, which suggest incipient speciation or cryptic diversity, or previously described mitochondrial introgression events. The phylogenetic species delimitation methods resulted in substantial oversplitting of currently accepted taxonomy. This COI barcoding library provides an almost complete and reliable reference library for Western Palearctic amphibians. We highlight the importance of generating comprehensive and well curated reference libraries that include intra- and interspecific genetic variability and the need of detailed taxonomic revision when ambiguous or incorrect DNA barcodes exist.
为各种分类群组装DNA条形码参考库使研究人员能够使用代谢编码或环境DNA方法来快速了解特定环境中的多样性。然而,我们使用参考文库的能力取决于DNA条形码恢复分类边界和识别物种的准确程度,而这一点很少被考虑。我们为西北极的两栖动物构建了一个广泛的COI条形码库,并成功地从60个无尾目和73个无尾目的物种中回收了条形码(分别占西北极名义无尾目物种的94%和98%),涵盖了该地区大多数物种的种内多样性。我们使用条形码缺口、效率分析和两种系统发育物种划界方法测试了我们组装的DNA条形码数据集用于物种识别的有效性。我们获得了1251个标本(691个无尾和560个无尾)的DNA条形码,物种鉴定的成功率很高(92-96%)。许多样本中没有条形码缺口与物种错误识别有关,这表明物种形成初期或隐蔽多样性,或先前描述的线粒体渗入事件。系统发育物种的划分方法导致了目前公认的分类学的大量超支。这个COI条形码库为西北极两栖动物提供了一个几乎完整可靠的参考库。我们强调了生成全面和精心策划的参考文库的重要性,其中包括种内和种间遗传变异性,以及当存在模糊或不正确的DNA条形码时需要进行详细的分类修订。
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引用次数: 1
Phylogenetic relationships of the West African mud turtle (Pelusios castaneus) on the islands of São Tomé and Príncipe, West Central Africa 西非中非圣多美和普林西比岛上西非泥龟(Pelusios castaneus)的系统发育关系
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2023-07-03 DOI: 10.1163/15685381-bja10145
Patrícia Guedes, Yodiney dos Santos, Estrela Matilde, J. Alves, C. Rato, R. Rocha
On the island nation of São Tomé and Príncipe, West Africa, only one species of terrapin has been recorded: the West African mud turtle, Pelusios castaneus. Here, we use a mtDNA phylogenetic approach to shed light on the geographical origin of Pelusios castaneus on both islands. Our results indicate several independent colonisations from different African mainland regions (Nigeria, Ivory Coast, Sierra Leone and Congo). However, it is still unclear if the species arrived on the islands by natural dispersal (e.g., through vegetation rafts) or by human agency (e.g., as a food source). Our work provides important insights into the origins of P. castaneus in São Tomé and Príncipe, but a more in-depth study is needed to fully understand the origins and evolutionary histories of these populations.
在西非的圣多美和普林西比岛国,只有一种水龟被记录在案:西非泥龟Pelusios castaneus。在这里,我们使用mtDNA系统发育方法来阐明这两个岛屿上的Pelusios castaneus的地理起源。我们的研究结果表明,来自不同非洲大陆地区(尼日利亚、科特迪瓦、塞拉利昂和刚果)的几个独立殖民地。然而,目前尚不清楚该物种是通过自然扩散(例如,通过植被筏)还是通过人类活动(例如,作为食物来源)抵达岛屿的。我们的工作为圣多美和普林西比的P.castaneus的起源提供了重要的见解,但需要更深入的研究来充分了解这些种群的起源和进化史。
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引用次数: 0
Captive breeding unveils hybridisation between aquatic and terrestrial reproductive modes and a reversal reproductive shift within Salamandra salamandra gallaica 圈养繁殖揭示了水生和陆地生殖模式之间的杂交,并在加拉河鲵中逆转了生殖转变
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2023-06-07 DOI: 10.1163/15685381-bja10143
G. Velo‐Antón, Clara Figueiredo-Vázquez, Lucía Alarcón-Ríos
Bimodal reproductive species offer an excellent opportunity to study the evolution of reproductive shifts, yet are extremely rare among vertebrates. Salamandra salamandra is one of two bimodal amphibian species, showing two viviparity modes: an aquatic (larviparity) and a terrestrial (pueriparity) mode. Although hybridization between larviparous and pueriparous lineages occurs in natural contact zones, their reproductive output is unknown. We conducted a captive breeding experiment to cross pueriparous insular females and larviparous continental males of S. s. gallaica. We first confirmed the reproductive output of the females and used parentage analysis to confirm the parents of the offspring, which resulted in a single group of aquatic larvae. We report, for the first time, direct evidence of F1 hybrids between parity modes in urodeles and a case of parity mode reversal at the individual level. Our study highlights S. salamandra as a bimodal reproductive species that offers exceptional opportunities to understand the evolution of viviparity.
双峰生殖物种为研究生殖转变的进化提供了极好的机会,但在脊椎动物中极为罕见。Salamandra Salamandra是两种双峰两栖动物之一,表现出两种胎生模式:水生(幼虫)和陆生(产褥)模式。虽然幼虫和产仔谱系之间的杂交发生在自然接触区,但它们的生殖输出是未知的。本文采用人工圈养繁殖方法,将岛雌和大陆雄进行杂交。我们首先确认了雌性的生殖输出,并通过亲子分析确认了后代的父母,从而得到了一组水生幼虫。我们报告,首次直接证据的F1杂交之间的宇称模式和宇称模式反转的情况下,在个体水平。我们的研究强调salamandra是一种双峰生殖物种,为了解胎生的进化提供了特殊的机会。
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引用次数: 0
The relationship between temperature, growth rate and body condition of Bufo bufo toadlets prior to their first hibernation 蟾蜍首次冬眠前温度、生长速度与身体状况的关系
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2023-06-01 DOI: 10.1163/15685381-bja10142
C. Reading, G. Jofré
The effect of environmental temperature on the growth and body condition of common toad (Bufo bufo) toadlets was studied during their first terrestrial growth season, following metamorphosis, at a pond in south Dorset, UK, between 2010 and 2021. Toadlet samples were collected annually on the first day of emergence and then approximately once a week until late September/early October. In total, 15-19 samples were collected annually depending on the duration of the toadlet activity season. Toadlet snout-vent length (mm) and body mass (mg) of each captured toadlet was measured and their body condition (Scaled Mass Index: SMI) estimated both annually and for each annual quarter season. Toadlet growth rate and SMI varied between years and were significantly correlated with the duration of their first growth season and its lowest recorded temperature. Growth rate declined as the duration of the growth season increased whilst the reverse was true for SMI. Growth rates also increased as temperatures increased and vice versa for SMI. SMI was inversely correlated to growth rate and suggest that toadlets may enter their first hibernation larger, but in poorer condition, following warm summers than cool summers, and that this may have the potential to reduce their survivorship during a following mild winter. Assuming that similar relationships, between growth rates, body condition and environmental temperatures are not restricted to toadlets during their first terrestrial growth season, then this scenario may also be applicable to subsequent juvenile stages, further increasing the potential consequences for individual survival and fitness.
2010年至2021年间,在英国多塞特郡南部的一个池塘里,研究了环境温度对蟾蜍变态后第一个陆地生长季节生长和身体状况的影响。蟾蜍的样本每年在出现的第一天采集,然后大约每周采集一次,直到9月底/10月初。根据蟾蜍活动季节的持续时间,每年总共采集15-19个样本。每年和每个季度,测量捕获的每只蟾蜍的蟾蜍鼻喷口长度(mm)和体重(mg),并估计它们的身体状况(标度质量指数:SMI)。蟾蜍的生长速率和SMI随年份变化,与第一个生长季节的持续时间和记录的最低温度显著相关。随着生长季节的延长,生长率下降,而SMI的情况正好相反。SMI的生长速率也随着温度的升高而增加,反之亦然。SMI与生长速度呈负相关,表明蟾蜍在温暖的夏天比凉爽的夏天进入第一次冬眠的时间更长,但条件较差,这可能会降低它们在随后温和的冬天的存活率。假设生长速度、身体状况和环境温度之间的类似关系不局限于蟾蜍在第一个陆地生长季节,那么这种情况也可能适用于随后的幼年阶段,从而进一步增加对个体生存和健康的潜在影响。
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引用次数: 0
Man-made infrastructures as accidental traps for herpetofauna in eastern Spain: incidence and modelling 人造基础设施作为西班牙东部爬行动物的意外陷阱:发生率和模型
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2023-05-31 DOI: 10.1163/15685381-bja10139
Ángel Gálvez, M. Alonso, J. Bisbal-Chinesta, Javier Burgos, D. Candel, Berto Gil, Antonio Gómez-Mercader, Álex Mondéjar, Carlos Ortega, R. Sánchez, Marcos Real, Emilio Rosillo, Pablo Vicent-Castelló, Luis Albero
Water supplies in arid regions have traditionally been assured by cisterns, channels, wells, among other man-made structures with smooth vertical walls that can be deadly traps for several animals, including amphibians and reptiles. In this study, we investigate the incidence of such “trap structures” on the herpetofauna of the eastern Iberian Peninsula. We explored which features of these structures and which biological traits are associated with higher incidence of falling into these traps. We studied 205 trap structures and found 1224 amphibians or reptiles representing 25 different species, including endangered and protected ones. Broad-scale macroclimate and landscape variables were not associated with the incidence of traps. Instead, trap impact was influenced mainly by trap morphology and season of the year, which suggests that construction design and species phenology are the main factors to affect the incidence of a trap. Biological traits (subterranean or aquatic habits, diet, nocturnal activity or emission of reproductive calls) in some species were related to the probability of falling into these traps. Some species of snakes, lizards, and toads were more prone to fall in trap structures than other species. We conclude that trap structures can strongly impact amphibian and reptile survival, especially in arid or semi-arid regions where wells and water cisterns are widespread.
干旱地区的供水传统上是由蓄水池、渠道、水井和其他具有光滑垂直墙壁的人造结构来保证的,这些结构可能会对包括两栖动物和爬行动物在内的几种动物造成致命的陷阱。在这项研究中,我们调查了这种“陷阱结构”在伊比利亚半岛东部疱疹动物群中的发生率。我们探讨了这些结构的哪些特征以及哪些生物学特征与落入这些陷阱的几率较高有关。我们研究了205个陷阱结构,发现1224种两栖动物或爬行动物,代表25个不同的物种,包括濒危物种和受保护物种。大尺度的大气候和景观变量与陷阱的发生率无关。相反,诱捕器的影响主要受诱捕器形态和一年中的季节的影响,这表明结构设计和物种表型是影响诱捕器发生的主要因素。一些物种的生物学特征(地下或水生习性、饮食、夜间活动或繁殖叫声的发出)与落入这些陷阱的概率有关。某些种类的蛇、蜥蜴和蟾蜍比其他物种更容易落入陷阱结构中。我们得出的结论是,陷阱结构会强烈影响两栖动物和爬行动物的生存,尤其是在水井和蓄水池分布广泛的干旱或半干旱地区。
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引用次数: 0
The gator grapnel: pedal anchoring in the American alligator (Alligator mississippiensis) 短吻鳄抓钩:美洲短吻鳄的脚踏锚定(密西西比短吻鳄)
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2023-05-23 DOI: 10.1163/15685381-bja10141
Collin Walter, M. Cramberg, B. Young
To resist forward displacement of their body during non-locomotor behaviors such as feeding, American alligators (Alligator mississippiensis) hold their hindfeet vertical, then push the foot into the substrate so that the dorsum of the foot forms a contact area with the substrate. Herein this form of bracing is termed pedal anchoring. The purpose of the present study was to describe pedal anchoring and to demonstrate whether it entailed interaction between the hindfoot (pes) of Alligator and the substrate that differed from the interactions seen during locomotion. Alligator tracks were studied in the wild, during controlled field trials, and on a mud trackway in the laboratory; in each setting locomotor and pedal anchoring tracks were photographed, cast in Plaster of Paris, then features of the casts quantified. Statistical analysis demonstrated greater variation in the wild tracks, presumably reflecting the larger size and velocity ranges of the alligators involved, and suggested that the mud trackway used during the locomotor trials did not create significant artifact. Tracks produced during locomotion and pedal anchoring by the same alligators, on the same substrate, yielded significantly different quantitative features, different matrices of Pearson correlation coefficients, and different patterns of character distribution following Principal Component Analysis. These results all support the conclusion that pedal anchoring involves fundamentally different interaction between the pes and the substrate than occurs during locomotion.
在进食等非运动行为中,为了防止身体向前移动,美洲鳄(短吻鳄)将后脚保持垂直,然后将脚推入衬底,使足背与衬底形成接触区域。在这里,这种形式的支撑被称为踏板锚固。本研究的目的是描述踏板锚定,并证明它是否涉及鳄鱼的后脚(pes)和基底之间的相互作用,不同于在运动过程中看到的相互作用。短吻鳄的足迹分别在野外、野外对照试验和实验室的泥道上进行了研究;在每个场景中,拍摄了机车和脚踏的固定轨道,用巴黎石膏浇铸,然后对浇铸的特征进行量化。统计分析表明,野生轨道的差异更大,可能反映了鳄鱼的体型和速度范围更大,并表明在运动试验中使用的泥轨道没有产生显著的伪影。同一短吻鳄在同一基材上运动和脚踏固定过程中产生的足迹,在主成分分析中产生了显著不同的数量特征、不同的Pearson相关系数矩阵和不同的性状分布模式。这些结果都支持这样的结论,即踏板锚定涉及到与运动过程中发生的踏板与基底之间的根本不同的相互作用。
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引用次数: 0
An overview of parental care in the foam-nesting frogs of the genus Leptodactylus (Anura: Leptodactylidae): current knowledge and future directions 细趾蛙属泡沫巢蛙的父母照料概述(无尾目:细趾蛙科):当前知识和未来方向
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2023-05-17 DOI: 10.1163/15685381-bja10140
J. C. Carrillo, D. Santana, C. Prado
Amphibians exhibit diverse parental care behaviours, which may be performed by the female, male or both parents. In the Neotropical family Leptodactylidae, frogs in the genus Leptodactylus exhibit different parenting behaviours. The repertoire of care behaviours includes egg/nest attendance, nest chamber sealing, tadpole feeding with trophic eggs, and tadpole attendance associated with complex behaviours, such as pumping behaviour and channel digging. Based on the available information, we found that 23.8% of Leptodactylus species are known to exhibit post-fertilization parental care. Future studies should focus on mechanisms involved in parent-offspring communication, including acoustic and chemical signals. Moreover, behaviours such as provisioning with trophic eggs are not well understood and deserves further investigation. Because of these complex parental care behaviours, tadpole schooling, and relative easy observation, frogs in the genus Leptodactylus represent excellent models for studies interested in parent-offspring communication and evolution of parental care.
两栖动物表现出多样化的亲代抚育行为,可能由雌性、雄性或双亲共同完成。在新热带的细趾蛙科中,细趾蛙属的青蛙表现出不同的育儿行为。看护行为包括卵/巢看护、巢室密封、蝌蚪喂养有营养的卵,以及与复杂行为相关的蝌蚪看护,如抽水行为和挖通道。根据现有的资料,我们发现23.8%的细趾虫有受精后的亲代抚育行为。未来的研究应该集中在亲子交流的机制上,包括声音和化学信号。此外,提供营养卵等行为尚不清楚,值得进一步研究。由于这些复杂的亲代抚育行为、蝌蚪群居以及相对容易观察,细趾蛙属的青蛙为研究亲代交流和亲代抚育进化提供了很好的模型。
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引用次数: 0
Geographic peculiarities of structure and hemicloning reproduction of Pelophylax esculentus water frog complex (Anura, Ranidae) populations in the East European Plain within Ukraine 乌克兰境内东欧平原水蛙群结构和半克隆繁殖的地理特征
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2023-05-03 DOI: 10.1163/15685381-bja10136
S. Mezhzherin, S. Morozov-Leonov, O. Nekrasova, O. Rostovskaya
Geographic peculiarities of population structure and hemicloning reproduction of the water frog Pelophylax esculentus complex of 904 samples within southern East European Plain were analyzed. The proportion of populations of P. ridibundus is 0.667 against those 0.042 of P. lessonae. The RE-type populations are the most common among mixed ones (0.153). The colonies of the two parental species and P. kl. esculentus (REL-type), as well as those of P. lessonae with P. kl. esculentus (LE-type), have the frequencies 0.072 and 0.046, respectively. All-hybrid populations (E-type) are not numerous across the region (0.017). In the populations of Central, Northern and Western Ukraine, the P. lessonae genome is eliminated during gametogenesis within hybrids while in the Lower Dnieper and Lower Danube drainages, genome of P. ridibundus is eliminated. In the Eastern Ukraine populations, hybrids usually produce diploid gametes or haploid gametes with the P. ridibundus genome, less often with the chromosome set of P. lessonae only, and even more rarely a mixture of different types of gametes. The predominance of P. ridibundus in hybrid communities and the elimination of the P. lessonae genome in hybrids inevitably leads to the transformation of hybrid populations into “pure” R-type populations. This circumstance makes hybridization with P. ridibundus a factor in the shrinking of P. lessonae populations. That trend is especially expressed in the Forest steppe zone, where hybridization proceeds most intensively, the P. lessonae genome is eliminated in hybrids, and unstable populations with a numerical superiority of P. ridibundus predominate.
分析了东南欧平原904个水蛙Pelophilax esculentus复合体的种群结构和半克隆繁殖的地理特征。ridibundus的种群比例为0.667,而lessonae的种群比例则为0.042。RE型种群在混合种群中最为常见(0.153)。两个亲本物种和P.kl.esculentus(REL型)的菌落频率分别为0.072和0.046,以及P.lessonae和P.kl.esculent(LE型)的群体频率分别为0.046。所有杂交种群(E型)在整个地区并不多(0.017)。在乌克兰中部、北部和西部的种群中,P.lessonae基因组在杂交后代的配子发生过程中被消除,而在下第聂伯河和下多瑙河流域,P.ridibundus的基因组被消除。在乌克兰东部的种群中,杂交种通常产生二倍体配子或单倍体配子,其染色体组仅为小单胞菌,更罕见的是不同类型配子的混合物。ridibundus在杂交群落中的优势和P.lessonae基因组在杂交中的消除不可避免地导致杂交种群转变为“纯”R型种群。这种情况使得与ridibundus的杂交成为了P.lessonae种群减少的一个因素。这一趋势在森林草原区尤其明显,那里的杂交进行得最为密集,P.lessonae基因组在杂交中被消除,数量优势为P.ridibundus的不稳定种群占主导地位。
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引用次数: 0
Phylogenetic analysis of the critically endangered Karpathos water frog (Anura, Amphibia): conservation insights from complete mitochondrial genome sequencing 极度濒危的卡帕索斯水蛙(Anura,两栖纲)的系统发育分析:线粒体全基因组测序对保护的启示
IF 1.6 4区 生物学 Q2 Agricultural and Biological Sciences Pub Date : 2023-05-02 DOI: 10.1163/15685381-bja10138
Elisavet-Aspasia Toli, Anastasios Bounas, A. Christopoulos, P. Pafilis, K. Sotiropoulos
The Karpathos water frog (Pelophylax cerigensis) is classified as Critically Endangered according to the IUCN Red List and its distribution is restricted on the island of Karpathos, South Aegean Sea. Utilizing a next generation sequencing approach, we obtained whole mitochondrial genomes of P. cerigensis to determine the species phylogenetic position within the genus Pelophylax and to clarify the phylogenetic relationship between the species’ population on Karpathos Island and the population of P. cf. bedriagae from the neighboring Rhodes Island. High-throughput sequencing generated mean ± SD = 227 945 ± 18 306 reads averaged per sample. High quality reads were assembled resulting in the complete mitogenome of P. cerigensis of a total size of 17 922 bp. Mitogenome organization was similar to other Pelophylax species, comprising of 13 Protein Coding Genes (PCGs), 22 tRNAs, two rRNAs and one Control Region. Overall mean genetic distance for the 13 PCGs, within the Ranidae family, ranged from 8.01% (COIII) to 11.6% (ATP8), while ratios of synonymous and non-synonymous substitutions were <1 in all the 13 PCGs, indicating purifying selection. Maximum Likelihood and Bayesian Inference analyses based on the concatenated sequences of 13 PCGs and two rRNAs (12S and 16S), showed that individuals from Karpathos and Rhodes form a well-supported monophyletic group with low genetic distance between them (p-distance = 0.1%). Hence, the Rhodes populations seem to belong to P. cerigensis and not to P. bedriagae as formerly thought, highlighting the need for revision of P. cerigensis current conservation status as well as further examination of the P. bedriagae species group.
根据国际自然保护联盟红色名录,卡帕索斯水蛙(Pelophilax cerigensis)被列为极度濒危物种,其分布在爱琴海南部的卡帕索斯岛上受到限制。利用下一代测序方法,我们获得了P.cerigensis的线粒体全基因组,以确定物种在Pelophylax属中的系统发育位置,并阐明该物种在Karpathos岛上的种群与邻近罗兹岛的P.cf.bedriagae种群之间的系统发育关系。高通量测序产生的平均值±SD=227 945±18 306读取每个样本的平均值。组装了高质量的读数,得到了总大小为17的樱桃P.cerigensis的完整有丝分裂基因组 922bp。线粒体基因组组织与其他Pelophilax物种相似,包括13个蛋白质编码基因(PCG)、22个tRNA、两个rRNA和一个对照区。蛙科13个PCG的总体平均遗传距离在8.01%(COII)至11.6%(ATP8)之间,而在所有13个PCGs中,同义和非同义取代的比率均<1,表明纯化选择。基于13个PCG和两个rRNA(12S和16S)的串联序列的最大似然和贝叶斯推断分析表明,来自Karpathos和Rhodes的个体形成了一个支持良好的单系群,它们之间的遗传距离较低(p距离=0.1%),强调需要对樱桃P.cerigensis目前的保护状况进行修订,并对床生P.bedriagae物种群进行进一步研究。
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引用次数: 0
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Amphibia-Reptilia
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