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Holobiont Evolution: Population Theory for the Hologenome. 全息生物进化:全息基因组的种群理论。
IF 2.9 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2023-06-01 DOI: 10.1086/723782
Joan Roughgarden

AbstractThis article develops mathematical theory for the population dynamics of microbiomes with their hosts and for holobiont evolution caused by holobiont selection. The objective is to account for the formation of microbiome-host integration. Microbial population dynamic parameters must mesh with the host's for coexistence. A horizontally transmitted microbiome is a genetic system with "collective inheritance." The microbial source pool in the environment corresponds to the gamete pool for nuclear genes. Poisson sampling of the microbial source pool corresponds to binomial sampling of the gamete pool. However, holobiont selection on the microbiome does not lead to a counterpart of the Hardy-Weinberg law or to directional selection that always fixes microbial genes conferring the highest holobiont fitness. A microbe might strike an optimal fitness balance between lowering its within-host fitness while increasing holobiont fitness. Such microbes are replaced by otherwise identical microbes that contribute nothing to holobiont fitness. This replacement can be reversed by hosts that initiate immune responses to nonhelpful microbes. This discrimination leads to microbial species sorting. Host-orchestrated species sorting followed by microbial competition, rather than coevolution or multilevel selection, is predicted to be the cause of microbiome-host integration.

摘要:本文发展了微生物群与宿主种群动态关系的数学理论,以及全息生物选择引起的全息生物进化理论。目的是解释微生物群-宿主整合的形成。微生物种群的动态参数必须与宿主的动态参数相吻合才能共存。水平传递的微生物群是一种具有“集体遗传”的遗传系统。环境中的微生物源库对应于核基因的配子库。微生物源库泊松采样与配子库二项采样相对应。然而,微生物组上的全息选择并不会导致Hardy-Weinberg定律的对应结果,也不会导致定向选择,即总是固定微生物基因,赋予最高的全息适合度。微生物可能会在降低宿主内部适应性和提高整体适应性之间达到最佳适应性平衡。这些微生物被其他方面完全相同的微生物所取代,而这些微生物对全息生物的适应性没有任何贡献。这种替换可以被宿主对无用的微生物发起免疫反应逆转。这种区分导致微生物种类分类。宿主精心安排的物种分选随后是微生物竞争,而不是共同进化或多层次选择,这被预测为微生物组-宿主整合的原因。
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引用次数: 7
Thermal Plasticity in Behavioral Traits Mediates Mating and Reproductive Dynamics in an Ectotherm. 变温动物行为特征的热可塑性调节交配和繁殖动态。
IF 2.9 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2023-06-01 DOI: 10.1086/724381
Jeanette B Moss, Zachary Borthwick, Erik Wapstra, Geoffrey M While

AbstractEnvironmental temperatures potentially influence reproductive performance and sexual selection by restricting opportunities for activity. However, explicit tests of the behavioral mechanisms linking thermal variation to mating and reproductive performance are rare. We address this gap in a temperate lizard by combining social network analysis with molecular pedigree reconstruction in a large-scale thermal manipulation experiment. Populations exposed to cool thermal regimes presented fewer high-activity days compared with populations exposed to a warmer regime. While plasticity in thermal activity responses in males masked overall differences in activity levels, prolonged restriction nevertheless affected the timing and consistency of male-female interactions. Females were less capable than males of compensating for lost activity time under cold stress, and less active females in this group were significantly less likely to reproduce. While sex-biased activity suppression appeared to limit male mating rates, this did not correspond to a heightened intensity of sexual selection or shifts in the targets of sexual selection. In many populations facing thermal activity restriction, sexual selection on males may play a limited role relative to other thermal performance traits in facilitating adaptation.

环境温度通过限制活动机会而潜在地影响生殖性能和性选择。然而,关于热变化与交配和繁殖表现之间的行为机制的明确测试很少。我们通过将社会网络分析与分子谱系重建相结合,在大规模热操纵实验中解决了温带蜥蜴的这一差距。与暴露于较暖环境的人群相比,暴露于较冷热环境的人群表现出较少的高活动天数。虽然雄性热活动反应的可塑性掩盖了活动水平的总体差异,但长期限制仍然影响了雄性-雌性互动的时间和一致性。与雄性相比,雌性在冷应激下补偿失去的活动时间的能力更弱,而在这一组中,不活跃的雌性繁殖的可能性明显更低。虽然性别偏见的活动抑制似乎限制了雄性交配率,但这并不对应于性选择强度的提高或性选择目标的转移。在许多面临热活动限制的种群中,相对于其他热性能特征,雄性的性选择可能在促进适应方面发挥有限的作用。
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引用次数: 0
Acceptable Loss: Fitness Consequences of Salinity-Induced Cell Death in a Halotolerant Microalga. 可接受的损失:耐盐微藻中盐诱导细胞死亡的适应性后果。
IF 2.9 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2023-06-01 DOI: 10.1086/724417
Nathalie Zeballos, Daphné Grulois, Christelle Leung, Luis-Miguel Chevin

AbstractEnvironmentally induced reductions in fitness components (survival, fecundity) are generally considered as passive, maladaptive responses to stress. However, there is also mounting evidence for active, programmed forms of environmentally induced cell death in unicellular organisms. While conceptual work has questioned how such programmed cell death (PCD) might be maintained by natural selection, few experimental studies have investigated how PCD influences genetic differences in longer-term fitness across environments. Here, we tracked the population dynamics of two closely related strains of the halotolerant microalga Dunaliella salina following transfers across salinities. We showed that after a salinity increase, only one of these strains displayed a massive population decline (-69% in 1 h), largely attenuated by exposure to a PCD inhibitor. However, this decline was followed by a rapid demographic rebound, characterized by faster growth than the nondeclining strain, such that sharper decline was correlated with faster subsequent growth across experiments and conditions. Strikingly, the decline was more pronounced in conditions more favorable to growth (more light, more nutrients, less competition), further suggesting that it was not simply passive. We explored several hypotheses that could explain this decline-rebound pattern, which suggests that successive stresses could select for higher environmentally induced death in this system.

环境导致的适应性成分(存活率、繁殖力)的降低通常被认为是对压力的被动、不适应反应。然而,也有越来越多的证据表明,在单细胞生物中,环境诱导的细胞死亡是活跃的、程序化的形式。虽然概念性工作质疑这种程序性细胞死亡(PCD)是如何通过自然选择维持的,但很少有实验研究调查PCD如何影响不同环境中长期适应性的遗传差异。在这里,我们追踪了两种密切相关的耐盐微藻Dunaliella salina在跨盐度转移后的种群动态。我们发现,在盐度增加后,这些菌株中只有一种表现出大量的种群下降(在1小时内下降69%),主要是由于暴露于PCD抑制剂而减弱。然而,这种下降之后是快速的人口反弹,其特点是比非下降品系增长更快,因此,在实验和条件下,更急剧的下降与随后更快的增长相关。引人注目的是,在更有利于生长的条件下(更多的光照、更多的营养、更少的竞争),这种下降更为明显,这进一步表明它不仅仅是被动的。我们探索了几个可以解释这种下降-反弹模式的假设,这表明在这个系统中,连续的压力可能会选择更高的环境诱导死亡。
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引用次数: 1
Dog Life Spans and the Evolution of Aging. 狗的寿命和衰老的进化。
IF 2.9 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2023-06-01 DOI: 10.1086/724384
Jack da Silva, Bethany J Cross

AbstractThe basic tenets of the evolutionary theories of senescence are well supported. However, there has been little progress in determining the relative influences of mutation accumulation and life history optimization. The causes of the well-established inverse relationship between life span and body size across dog breeds are used here to test these two classes of theories. The life span-body size relationship is confirmed for the first time after controlling for breed phylogeny. The life span-body size relationship cannot be explained by evolutionary responses to differences in extrinsic mortality either of contemporary breeds or of breeds at their establishment. The development of breeds larger and smaller than ancestral gray wolves has occurred through changes in early growth rate. This may explain the increase in the minimum age-dependent mortality rate with breed body size and thus higher age-dependent mortality throughout adult life. The main cause of this mortality is cancer. These patterns are consistent with the optimization of life history as described by the disposable soma theory of the evolution of aging. The dog breed life span-body size relationship may be the result of the evolution of greater defense against cancer lagging behind the rapid increase in body size during recent breed establishment.

摘要衰老进化理论的基本原理得到了很好的支持。然而,在确定突变积累和生活史优化的相对影响方面进展甚微。在这里,我们用狗的寿命和体型成反比关系的原因来检验这两类理论。在控制品种系统发育后,首次证实了寿命与体型的关系。无论是当代品种还是品种建立时,寿命与体型的关系都不能用对外在死亡率差异的进化反应来解释。比祖先灰狼大或小的品种的发展是通过早期生长速度的变化发生的。这可能解释了最小年龄依赖性死亡率随着品种体型的增加而增加,从而在整个成年生活中较高的年龄依赖性死亡率。这种死亡率的主要原因是癌症。这些模式与衰老进化的一次性躯体理论所描述的生命史的优化是一致的。犬种寿命与体型之间的关系可能是由于在最近的犬种建立过程中,犬种对癌症的防御能力的进化落后于体型的快速增长。
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引用次数: 2
Social Familiarity and Spatially Variable Environments Independently Determine Reproductive Fitness in a Wild Bird. 社会熟悉度和空间可变环境独立决定了野生鸟类的生殖适应性。
IF 2.9 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2023-06-01 DOI: 10.1086/724382
Samin Gokcekus, Josh A Firth, Charlotte Regan, Ella F Cole, Ben C Sheldon, Gregory F Albery

AbstractThe social interactions that an individual experiences are a key component of its environment and can have important consequences for reproductive success. The dear enemy effect posits that having familiar neighbors at a territory boundary can reduce the need for territory defense and competition and potentially increase cooperation. Although fitness benefits of reproducing among familiar individuals are documented in many species, it remains unclear to what extent these relationships are driven by direct benefits of familiarity itself versus other socioecological covariates of familiarity. We use 58 years of great tit (Parus major) breeding data to disentangle the relationship between neighbor familiarity, partner familiarity, and reproductive success while simultaneously considering individual and spatiotemporal effects. We find that neighbor familiarity was positively associated with reproductive success for females but not males, while an individual's familiarity with their breeding partner was associated with fitness benefits for both sexes. There was strong spatial heterogeneity in all investigated fitness components, but our findings were robust and significant over and above these effects. Our analyses are consistent with direct effects of familiarity on individuals' fitness outcomes. These results suggest that social familiarity can yield direct fitness benefits, potentially driving the maintenance of long-term bonds and evolution of stable social systems.

摘要个体经历的社会互动是其环境的关键组成部分,对生殖成功具有重要影响。亲敌效应认为,在领土边界拥有熟悉的邻居可以减少对领土防御和竞争的需求,并潜在地增加合作。尽管在许多物种中都记录了在熟悉的个体中繁殖的适应性利益,但尚不清楚这些关系在多大程度上是由熟悉本身的直接利益与熟悉的其他社会生态协变量驱动的。我们使用58年的大山雀(Parus major)繁殖数据来理清邻居熟悉度、伴侣熟悉度和繁殖成功之间的关系,同时考虑个体和时空效应。我们发现,对邻居的熟悉程度与雌性的繁殖成功率呈正相关,而对雄性则没有关系,而个体对其繁殖伴侣的熟悉程度与两性的健康效益相关。在所有被调查的健康成分中都存在很强的空间异质性,但我们的研究结果在这些影响之外是稳健和显著的。我们的分析与熟悉度对个体健康结果的直接影响是一致的。这些结果表明,社会熟悉度可以产生直接的健康效益,潜在地推动长期关系的维持和稳定社会系统的进化。
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引用次数: 0
Nitrogen-Induced Hysteresis in Grassland Biodiversity: A Theoretical Test of Litter-Mediated Mechanisms. 草地生物多样性中氮诱导的滞后:凋落物介导机制的理论检验
IF 2.9 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2023-06-01 DOI: 10.1086/724383
Katherine Meyer, James Broda, Andrew Brettin, María Sánchez Muñiz, Sarah Gorman, Forest Isbell, Sarah E Hobbie, Mary Lou Zeeman, Richard McGehee

AbstractThe global rise in anthropogenic reactive nitrogen and the negative impacts of N deposition on terrestrial plant diversity are well documented. The R* theory of resource competition predicts reversible decreases in plant diversity in response to N loading. However, empirical evidence for the reversibility of N-induced biodiversity loss is mixed. In a long-term N-enrichment experiment in Minnesota, a low-diversity state that emerged during N addition has persisted for decades after additions ceased. Hypothesized mechanisms preventing recovery of biodiversity include nutrient recycling, insufficient external seed supply, and litter inhibition of plant growth. Here, we present an ordinary differential equation model that unifies these mechanisms, produces bistability at intermediate N inputs, and qualitatively matches the observed hysteresis at Cedar Creek. Key features of the model, including native species' growth advantage in low-N conditions and limitation by litter accumulation, generalize from Cedar Creek to North American grasslands. Our results suggest that effective biodiversity restoration in these systems may require management beyond reducing N inputs, such as burning, grazing, haying, and seed additions. By coupling resource competition with an additional interspecific inhibitory process, the model also illustrates a general mechanism for bistability and hysteresis that may occur in multiple ecosystem types.

摘要全球人为活性氮的增加和氮沉降对陆生植物多样性的负面影响已得到充分研究。资源竞争的R*理论预测植物多样性对氮负荷的响应是可逆的。然而,关于氮诱导生物多样性丧失可逆性的经验证据参差不齐。在明尼苏达州进行的一项长期N富集实验中,在N添加过程中出现的低多样性状态在N添加停止后持续了数十年。阻止生物多样性恢复的假设机制包括养分循环、外部种子供应不足和植物生长的凋落物抑制。在这里,我们提出了一个常微分方程模型,该模型统一了这些机制,在中等N输入下产生双稳性,并且定性地与Cedar Creek观察到的滞后相匹配。该模型的关键特征,包括本地物种在低氮条件下的生长优势和受凋落物积累的限制,从雪松溪到北美草原都具有普遍性。我们的研究结果表明,在这些系统中,有效的生物多样性恢复可能需要除了减少N输入之外的管理,如燃烧、放牧、干草和添加种子。通过将资源竞争与额外的种间抑制过程相结合,该模型还说明了可能发生在多种生态系统类型中的双稳态和滞后的一般机制。
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引用次数: 1
Predicting and Controlling Spillover in Multispecies Disease Transmission Networks: Steady-State Analysis. 预测和控制多物种疾病传播网络中的溢出效应:稳态分析
IF 2.9 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2023-06-01 Epub Date: 2023-04-25 DOI: 10.1086/724009
Wee Hao Ng, Christopher R Myers, Scott McArt, Stephen P Ellner

AbstractIn multispecies disease systems, pathogen spillover from a "reservoir community" can maintain disease in a "sink community" where it would otherwise die out. We develop and analyze models for spillover and disease spread in sink communities, focusing on questions of control: which species or transmission links are the most important to target to reduce the disease impact on a species of concern? Our analysis focuses on steady-state disease prevalence, assuming that the timescale of interest is long compared with that of disease introduction and establishment in the sink community. We identify three regimes as the sink community R0 scales from 0 to 1. Up to R00.3, overall infection patterns are dominated by direct exogenous infections and one-step subsequent transmission. For R01, infection patterns are characterized by dominant eigenvectors of a force-of-infection matrix. In between, additional network details can be important; we derive and apply general sensitivity formulas that identify particularly important links and species.

摘要 在多物种疾病系统中,病原体从 "库群落 "溢出可使疾病在 "汇群落 "中持续存在,否则疾病就会在 "汇群落 "中消亡。我们建立并分析了病原体溢出和疾病在水汇群落中传播的模型,重点是控制问题:要减少疾病对相关物种的影响,哪些物种或传播环节是最重要的目标?我们的分析侧重于稳态疾病流行,假定所关注的时间尺度与疾病引入和在汇聚群落中建立的时间尺度相比较长。当汇群落 R0 的范围从 0 到 1 时,我们确定了三种状态。当 R0≈0.3 时,整体感染模式主要是外源直接感染和一步式后续传播。当 R0≈1 时,感染模式以感染力矩阵的主导特征向量为特征。在两者之间,额外的网络细节可能非常重要;我们推导并应用了一般敏感性公式,以确定特别重要的链接和物种。
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引用次数: 0
Social Learning of Innovations in Dynamic Predator-Prey Systems. 动态捕食-食饵系统创新的社会学习。
IF 2.9 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2023-06-01 DOI: 10.1086/724491
David W Kikuchi, Margaret W Simon
We investigate the social transmission of innovations between predators. We focus on two classic predator-prey models. We assume that innovations increase predator attack rates or conversion efficiencies or that innovations reduce predator mortality or handling time. We find that a common outcome is the destabilization of the system. Destabilizing effects include increasing oscillations or limit cycles. Particularly, in more realistic systems (where prey are self-limiting and predators have a type II functional response), destabilization occurs because of overexploitation of the prey. Whenever instability increases the risk of extinction, innovations that benefit individual predators may not have positive long-term effects on predator populations. Additionally, instability could maintain behavioral variability among predators. Interestingly, when predator populations are low despite coexisting with prey populations near their carrying capacity, innovations that could help predators better exploit their prey are least likely to spread. Precisely how unlikely this is depends on whether naive individuals need to observe an informed individual interact with prey to learn the innovation. Our findings help illuminate how innovations could affect biological invasions, urban colonization, and the maintenance of behavioral polymorphisms.
摘要研究了捕食者之间创新的社会传播。我们关注两个经典的捕食者-猎物模型。我们假设创新提高了捕食者的攻击率或转换效率,或者创新降低了捕食者的死亡率或处理时间。我们发现一个常见的结果是系统的不稳定。不稳定效应包括增加振荡或极限环。特别是,在更现实的系统中(猎物是自我限制的,捕食者有II型功能反应),不稳定是由于对猎物的过度开发而发生的。每当不稳定增加灭绝的风险时,有利于捕食者个体的创新可能不会对捕食者种群产生积极的长期影响。此外,不稳定性可以维持捕食者之间的行为差异。有趣的是,当捕食者的数量很少时,尽管它们与猎物的数量接近其承载能力,但可以帮助捕食者更好地利用猎物的创新是最不可能传播的。确切地说,这种可能性有多大取决于天真的个体是否需要观察一个知情的个体与猎物的互动来学习创新。我们的发现有助于阐明创新如何影响生物入侵、城市殖民化和行为多态性的维持。
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引用次数: 1
Early Filial Cannibalism in Fish Revisited: Endocrinological Constraint, Costs of Parental Care, and Mating Possibility. 鱼类的早期同类相食:内分泌限制、亲代照顾成本和交配可能性。
IF 2.9 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2023-06-01 DOI: 10.1086/724284
Takeshi Takegaki, Yosuke Nakatake, Yukio Matsumoto, Koushirou Suga, Noriko Amiya

AbstractOffspring desertion by parents generally occurs at an early stage of parental care, which is thought to minimize the costs of parental care prior to desertion. This study investigated the effects of endocrinological constraints on early total filial cannibalism by male Rhabdoblennius nitidus in the field, a paternal brooding blennid fish with androgen-dependent brood cycling. In brood reduction experiments, cannibal males showed low levels of plasma 11-ketotestosterone (11-KT) relative to noncannibals and also similar levels of 11-KT to males in the parental care phase. Since 11-KT regulates male courtship intensity, males with decreased courtship activity would exhibit total filial cannibalism. However, there is a possibility that a transient increase in 11-KT levels at the early stage of parental care delays total filial cannibalism. In contrast, total filial cannibalism could occur before a decline to the lowest 11-KT levels, at which point males might still be able to exhibit courtships, possibly to reduce the costs of parental care. To understand how much and when caregiving males exhibit mating and parental care behaviors, it is important to consider not only the presence of endocrinological constraints but also its intensity and flexibility.

父母遗弃子女通常发生在亲代抚育的早期阶段,这被认为可以将遗弃前的亲代抚育成本降至最低。本研究在野外考察了内分泌限制对雄激素依赖型育雏周期父系杂交鱼nitidus (Rhabdoblennius nitius)早期全孝相食行为的影响。在减少后代数量的实验中,食人雄性的血浆11-酮睾酮(11-KT)水平低于非食人雄性,在亲代抚育阶段,11-KT水平与雄性相似。由于11-KT调节雄性求偶强度,因此求偶活动减少的雄性会表现出完全的同类相食行为。然而,有一种可能性是,在亲代抚育的早期阶段,11-KT水平的短暂增加延迟了整个子代同类相食的发生。相比之下,完全的同类相食行为可能会在降到最低的11kt水平之前发生,在这个水平上,雄性可能仍然能够表现出求爱行为,可能是为了减少父母照顾的成本。要了解雄性雄性在多大程度上以及何时表现出交配和亲代照顾行为,重要的是不仅要考虑内分泌限制的存在,还要考虑其强度和灵活性。
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引用次数: 0
Front and Back Matter 正面和背面
2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2023-06-01 DOI: 10.1086/726033
Next article FreeFront and Back MatterPDFPDF PLUS Add to favoritesDownload CitationTrack CitationsPermissionsReprints Share onFacebookTwitterLinkedInRedditEmail SectionsMoreDetailsFiguresReferencesCited by The American Naturalist Volume 201, Number 6June 2023 Published for The American Society of Naturalists Article DOIhttps://doi.org/10.1086/726033 © 2023 The University of Chicago. All rights reserved.PDF download Crossref reports no articles citing this article.
下一篇文章FreeFront和Back matters pdfpdf PLUS添加到收藏夹下载CitationTrack CitationsPermissionsReprints转载分享在facebook twitterlinkedinredditemail sectionsmoredetailsfigures参考文献引用美国博物学家201卷,编号6June 2023出版的美国博物学家协会文章DOIhttps://doi.org/10.1086/726033©2023芝加哥大学。Crossref报告没有引用这篇文章的文章。
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引用次数: 0
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