Rice wild relatives (RWR) provide valuable genetic resources for modern rice breeding, yet knowledge gaps constrain their conservation and further utilization. To address these gaps, the potential distributions of 22 RWR taxa were modeled, and their conservation statuses were assessed. Most taxa were identified as medium priority for further conservation. Further ex‐situ collecting hotspots are in Southeast and South Asia, Northern Australia, West Africa, and tropical Americas, while habitat protection lies in Southeast and South Asia, Northern Australia, and West Africa. Climate change may shift equatorial habitats to higher latitudes and mountain habitats to higher altitudes. Rice wild relatives (RWR) provide valuable genetic resources for modern rice breeding. However, knowledge gaps on their geographic distributions and conservation status constrain their conservation and further utilization. To fill these critical gaps, we modeled the potential distributions of 22 RWR taxa under current climate scenarios, assessed their conservation status, both ex situ (in genebanks or botanical gardens) and in situ (in protected areas), and examined changes in taxa richness of RWR in predicted areas under future climate scenarios. The RWR were primarily distributed in tropical Asia to tropical Australia, tropical Africa, and South and Central America. We identified 4 out of 22 taxa as high priority (HP) for further conservation action and 18 taxa as medium priority (MP). Hotspots requiring further collecting for ex situ conservation are concentrated in Southeast and South Asia, Northern Australia, West Africa, and tropical Americas. Meanwhile, habitat protection should be enhanced in Southeast and South Asia, Northern Australia, and West Africa. Under future climate change, suitable habitats near the equator are expected to shift toward higher latitudes and some in lower‐latitude basins may become unsuitable due to excessive heat, resulting in decreased taxa richness in these areas. Additionally, suitable habitats in high mountain areas may shift to higher altitudes, potentially augmenting taxa richness in the highlands. Our findings provide vital insights to guide future rescue conservation efforts for RWR.
{"title":"Global potential distributions and conservation status of rice wild relatives","authors":"Yunan Lin, Yanqing Chen, Hao Wang, Jingpeng Hong, Ruonan Yang, Yongsheng Cao, Shen Yan, Wei Fang","doi":"10.1002/ppp3.10522","DOIUrl":"https://doi.org/10.1002/ppp3.10522","url":null,"abstract":"Rice wild relatives (RWR) provide valuable genetic resources for modern rice breeding, yet knowledge gaps constrain their conservation and further utilization. To address these gaps, the potential distributions of 22 RWR taxa were modeled, and their conservation statuses were assessed. Most taxa were identified as medium priority for further conservation. Further ex‐situ collecting hotspots are in Southeast and South Asia, Northern Australia, West Africa, and tropical Americas, while habitat protection lies in Southeast and South Asia, Northern Australia, and West Africa. Climate change may shift equatorial habitats to higher latitudes and mountain habitats to higher altitudes.\u0000\u0000Rice wild relatives (RWR) provide valuable genetic resources for modern rice breeding. However, knowledge gaps on their geographic distributions and conservation status constrain their conservation and further utilization.\u0000To fill these critical gaps, we modeled the potential distributions of 22 RWR taxa under current climate scenarios, assessed their conservation status, both ex situ (in genebanks or botanical gardens) and in situ (in protected areas), and examined changes in taxa richness of RWR in predicted areas under future climate scenarios.\u0000The RWR were primarily distributed in tropical Asia to tropical Australia, tropical Africa, and South and Central America. We identified 4 out of 22 taxa as high priority (HP) for further conservation action and 18 taxa as medium priority (MP).\u0000Hotspots requiring further collecting for ex situ conservation are concentrated in Southeast and South Asia, Northern Australia, West Africa, and tropical Americas. Meanwhile, habitat protection should be enhanced in Southeast and South Asia, Northern Australia, and West Africa. Under future climate change, suitable habitats near the equator are expected to shift toward higher latitudes and some in lower‐latitude basins may become unsuitable due to excessive heat, resulting in decreased taxa richness in these areas. Additionally, suitable habitats in high mountain areas may shift to higher altitudes, potentially augmenting taxa richness in the highlands. Our findings provide vital insights to guide future rescue conservation efforts for RWR.\u0000","PeriodicalId":508327,"journal":{"name":"PLANTS, PEOPLE, PLANET","volume":"77 22","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141101589","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
K. Field, Y. Carrillo, Stuart A. Campbell, J. Ton, Adam Frew
Innovations in plant and soil sciences are revolutionising our approach to sustainability, offering solutions with broad societal impacts. Discoveries in these fields hold great potential for combatting, mitigating and adapting to climate change; enhancing food security; and revitalising urban environments. By harnessing the power of plants and the soils they grow in, it is possible to cultivate resilience in the face of environmental challenges, informing policy and practice, and thereby guiding us towards a more sustainable future.
{"title":"Innovation in plant and soil sciences to tackle critical global challenges","authors":"K. Field, Y. Carrillo, Stuart A. Campbell, J. Ton, Adam Frew","doi":"10.1002/ppp3.10520","DOIUrl":"https://doi.org/10.1002/ppp3.10520","url":null,"abstract":"Innovations in plant and soil sciences are revolutionising our approach to sustainability, offering solutions with broad societal impacts. Discoveries in these fields hold great potential for combatting, mitigating and adapting to climate change; enhancing food security; and revitalising urban environments. By harnessing the power of plants and the soils they grow in, it is possible to cultivate resilience in the face of environmental challenges, informing policy and practice, and thereby guiding us towards a more sustainable future.","PeriodicalId":508327,"journal":{"name":"PLANTS, PEOPLE, PLANET","volume":"22 6","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141117849","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Hildah K. Kithinji, Olivier Dayou, Léo Botton‐Divet, Thomas Stach, Susann Wicke
Parasitic plants that deprive crops of water and nutrients are an increasingly concerning food security issue, affecting the livelihood of millions of subsistence, small‐ and mid‐scale farmers. An in‐depth understanding of parasite–host interactions is required to develop species‐specific and ecologically sustainable parasite management methods. The non‐invasive visualization of herbaceous contact zones, applicable to diverse parasite–host pathosystems presented in this study, brings methodological advance to the research of biotic interactions between crops and plant parasites belonging to the most devastating parasitic plant family (Orobanchaceae). This work also provides first insights into how the parasites' feeding organ displaces host tissue beyond the direct parasite–host interface.High‐resolution X‐ray computed tomography (HRXCT) enables sectioning‐free two‐dimensional imaging of biological structures and reconstruction of three‐dimensional objects. Although its application is common in many areas of biomedicine and despite its flexibility regarding resolution levels, the technology remains underutilized in the plant sciences. Here, we explored HRXCT for the study of parasitic plant–plant interactions by developing protocols to access soft‐tissue host–parasite contact zones at cell‐level resolution. We tested various sample preparation methods and contrast stains for their efficiency to improve the imaging of haustorium samples. In doing so, we achieved cellular resolution with the visible cellular organization of haustorial structures, especially of the vascular system. Fresh stained and dehydrated sample preparation of soft haustoria enables the highest spatial resolution with fine‐cellular discrimination of haustorium versus host cells. Application of cell‐level resolved HRXCT to five pathosystems: Alectra‐cowpea, Phelipanche‐tomato, Phtheirospermum‐tomato, Rhamphicarpa‐tomato, and Striga‐sorghum highlighted a life history‐specific organization and uncovered an as yet undescribed internal displacement of host tissue at parasite–host interfaces. Following image‐based training, our HRXCT approach could invoke AI‐based cell recognition for automated parasite cell–host cell differentiation. Superseding extensive microsectioning for 3D imaging, the newly established HRXCT protocol for 2D‐ and 3D‐visualization of herbaceous plant–plant contact zones and the first insights gained from it, is useful for mid‐throughput, comparative studies of parasitic plant–host interactions.
寄生植物会剥夺作物的水分和养分，是一个日益令人担忧的粮食安全问题，影响着数百万自给自足的中小型农户的生计。需要深入了解寄生虫与寄主的相互作用，才能开发出针对特定物种的、生态上可持续的寄生虫管理方法。本研究提出的草本植物接触区非侵入式可视化方法适用于多种寄生虫-寄主病理系统，为研究作物与最具破坏性的寄生植物科（大戟科）植物寄生虫之间的生物相互作用带来了方法上的进步。高分辨率 X 射线计算机断层扫描（HRXCT）可对生物结构进行无切片二维成像，并重建三维物体。尽管高分辨率 X 射线计算机断层扫描（HRXCT）在生物医学的许多领域都得到了广泛应用，尽管它在分辨率方面具有灵活性，但在植物科学领域仍未得到充分利用。在这里，我们通过开发以细胞级分辨率获取软组织宿主-寄生虫接触区的方案，探索了 HRXCT 在寄生植物-植物相互作用研究中的应用。我们测试了各种样本制备方法和对比染色剂，以确定它们是否能有效改善包囊样本的成像。在此过程中，我们获得了细胞分辨率，看到了寄主结构的细胞组织，尤其是血管系统。新鲜染色和脱水的软管样本制备可实现最高的空间分辨率，并对软管和宿主细胞进行精细的细胞分辨。将细胞级分辨率的 HRXCT 应用于五个病理系统：在 Alectra-豇豆、Phelipanche-番茄、Phtheirospermum-番茄、Rhamphicarpa-番茄和 Striga-高粱这五个病理系统中应用了细胞级分辨 HRXCT，突出显示了生命史特异性组织，并发现了寄生虫-宿主界面上宿主组织尚未描述的内部位移。在基于图像的训练之后，我们的 HRXCT 方法可以调用基于人工智能的细胞识别技术，自动进行寄生虫细胞-宿主细胞分化。新建立的用于草本植物-植物接触区二维和三维可视化的 HRXCT 方案取代了大量的三维成像显微切片，并从中获得了初步见解，这对寄生植物-寄主相互作用的中通量比较研究非常有用。
{"title":"2D and 3D visualization of herbaceous plant–plant contact zones using high‐resolution X‐ray computed tomography (HRXCT)","authors":"Hildah K. Kithinji, Olivier Dayou, Léo Botton‐Divet, Thomas Stach, Susann Wicke","doi":"10.1002/ppp3.10509","DOIUrl":"https://doi.org/10.1002/ppp3.10509","url":null,"abstract":"Parasitic plants that deprive crops of water and nutrients are an increasingly concerning food security issue, affecting the livelihood of millions of subsistence, small‐ and mid‐scale farmers. An in‐depth understanding of parasite–host interactions is required to develop species‐specific and ecologically sustainable parasite management methods. The non‐invasive visualization of herbaceous contact zones, applicable to diverse parasite–host pathosystems presented in this study, brings methodological advance to the research of biotic interactions between crops and plant parasites belonging to the most devastating parasitic plant family (Orobanchaceae). This work also provides first insights into how the parasites' feeding organ displaces host tissue beyond the direct parasite–host interface.High‐resolution X‐ray computed tomography (HRXCT) enables sectioning‐free two‐dimensional imaging of biological structures and reconstruction of three‐dimensional objects. Although its application is common in many areas of biomedicine and despite its flexibility regarding resolution levels, the technology remains underutilized in the plant sciences. Here, we explored HRXCT for the study of parasitic plant–plant interactions by developing protocols to access soft‐tissue host–parasite contact zones at cell‐level resolution. We tested various sample preparation methods and contrast stains for their efficiency to improve the imaging of haustorium samples. In doing so, we achieved cellular resolution with the visible cellular organization of haustorial structures, especially of the vascular system. Fresh stained and dehydrated sample preparation of soft haustoria enables the highest spatial resolution with fine‐cellular discrimination of haustorium versus host cells. Application of cell‐level resolved HRXCT to five pathosystems: Alectra‐cowpea, Phelipanche‐tomato, Phtheirospermum‐tomato, Rhamphicarpa‐tomato, and Striga‐sorghum highlighted a life history‐specific organization and uncovered an as yet undescribed internal displacement of host tissue at parasite–host interfaces. Following image‐based training, our HRXCT approach could invoke AI‐based cell recognition for automated parasite cell–host cell differentiation. Superseding extensive microsectioning for 3D imaging, the newly established HRXCT protocol for 2D‐ and 3D‐visualization of herbaceous plant–plant contact zones and the first insights gained from it, is useful for mid‐throughput, comparative studies of parasitic plant–host interactions.","PeriodicalId":508327,"journal":{"name":"PLANTS, PEOPLE, PLANET","volume":"34 3","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140981137","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Daniel Cowan‐Turner, Bethan A. Morris, Alexandra Sandéhn, Iwona Bernacka‐Wojcik, Eleni Stavrinidou, R. F. Powell, I. Leitch, Jessica Taylor, Max Walker, Osita Nwokeocha, M. Kapralov, A. Borland
Research efforts in plant biology have often been focused on sequenced and well‐studied ‘model’ organisms. Despite the advent of relatively inexpensive genome sequencing, most plant taxonomic groups are underrepresented, with few species that ‘represent’ the diversity of whole genera. This study describes an economical guide to sequencing a non‐model organism, which may be useful in reducing the cost of sequencing more species within genera and across plant life. This method was used to develop Kalanchoë blossfeldiana as a resource for comparing C3 and the water‐conserving mode of photosynthesis known as Crassulacean acid metabolism (CAM) within the same plant. Despite the increasing number of well‐studied plant species with well‐annotated genomes across plant life, there are few densely sampled genera with more than a couple of genome sequences representing the diversity of whole genera. Here, we develop an economic approach to full‐genome sequencing that could be used to sequence many species within a genus. We made use of the Nanopore rapid sequencing kit to assist in plant genome assembly, dramatically reducing the cost. Here we applied this method to cost‐effectively develop genomic resources for Kalanchoë blossfeldiana, a commercially important ornamental, in which Crassulacean Acid Metabolism (CAM), a water‐conserving mode of photosynthesis can be induced. We present a physiological and biochemical characterisation of Kalanchoe blossfeldiana with its nuclear and chloroplastic genome and a comparative C3, CAM dusk transcriptome. We apply this approach to a complex tetraploid genome, making use of a relative species for chromosomal scaffolding to reduce assembly ploidy, we provide a resource for future gene expression studies. We highlight its limitations, e.g. the need for deeper sequencing to accurately resolve genome structure and haplotypes without using a relative species for scaffolding. The study demonstrates the merits of K. blossfeldiana as a comparative system for studying C3 and CAM within a plant and has identified substantial changes in the dusk transcriptome between young C3 and mature CAM K. blossfeldiana leaves in response to age‐induced CAM, and shows that in the absence of abiotic stress, CAM induction still involves the engagement of drought and abscisic acid (ABA) response pathways.
{"title":"Sequencing complex plants on a budget: The development of Kalanchoë blossfeldiana as a C3, CAM comparative tool","authors":"Daniel Cowan‐Turner, Bethan A. Morris, Alexandra Sandéhn, Iwona Bernacka‐Wojcik, Eleni Stavrinidou, R. F. Powell, I. Leitch, Jessica Taylor, Max Walker, Osita Nwokeocha, M. Kapralov, A. Borland","doi":"10.1002/ppp3.10517","DOIUrl":"https://doi.org/10.1002/ppp3.10517","url":null,"abstract":"Research efforts in plant biology have often been focused on sequenced and well‐studied ‘model’ organisms. Despite the advent of relatively inexpensive genome sequencing, most plant taxonomic groups are underrepresented, with few species that ‘represent’ the diversity of whole genera. This study describes an economical guide to sequencing a non‐model organism, which may be useful in reducing the cost of sequencing more species within genera and across plant life. This method was used to develop Kalanchoë blossfeldiana as a resource for comparing C3 and the water‐conserving mode of photosynthesis known as Crassulacean acid metabolism (CAM) within the same plant.\u0000Despite the increasing number of well‐studied plant species with well‐annotated genomes across plant life, there are few densely sampled genera with more than a couple of genome sequences representing the diversity of whole genera. Here, we develop an economic approach to full‐genome sequencing that could be used to sequence many species within a genus. We made use of the Nanopore rapid sequencing kit to assist in plant genome assembly, dramatically reducing the cost.\u0000Here we applied this method to cost‐effectively develop genomic resources for Kalanchoë blossfeldiana, a commercially important ornamental, in which Crassulacean Acid Metabolism (CAM), a water‐conserving mode of photosynthesis can be induced. We present a physiological and biochemical characterisation of Kalanchoe blossfeldiana with its nuclear and chloroplastic genome and a comparative C3, CAM dusk transcriptome.\u0000We apply this approach to a complex tetraploid genome, making use of a relative species for chromosomal scaffolding to reduce assembly ploidy, we provide a resource for future gene expression studies. We highlight its limitations, e.g. the need for deeper sequencing to accurately resolve genome structure and haplotypes without using a relative species for scaffolding.\u0000The study demonstrates the merits of K. blossfeldiana as a comparative system for studying C3 and CAM within a plant and has identified substantial changes in the dusk transcriptome between young C3 and mature CAM K. blossfeldiana leaves in response to age‐induced CAM, and shows that in the absence of abiotic stress, CAM induction still involves the engagement of drought and abscisic acid (ABA) response pathways.\u0000","PeriodicalId":508327,"journal":{"name":"PLANTS, PEOPLE, PLANET","volume":"23 22","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140982748","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Global climate models that incorporate carbon sources and sinks usually consider that forest uptake of carbon is in a state of equilibrium. Both historical and paleoecological records suggest that this is commonly not the case for Amazonia. Here, the impacts of colonial practices on Amazonian Indigenous peoples and forests are reviewed. Human activities affect forests' successional stages, trajectories, and species composition. By increasing the spatial coverage of paleoecological records that focus on pre‐ and post‐Columbian periods, the long‐term interactions between humans and Amazonian forests and their role in affecting Earth's climate may be better understood.Legacy effects left by the activities of Indigenous people in Amazonia are well known. Although severe, widespread, and recently occurring, the impacts left post‐1492 CE have been less investigated. We review the impact of colonial practices on Indigenous peoples and Amazonian forests. We suggest that forests comprise the sum of their past events, in a mosaic of different cumulative successional trajectories depending on the type, frequency, intensity, and timing of human influence. In regions with a history of minimal human influence, old‐growth species sensitive to fire would be the dominant landscape. In regions with high pre‐Columbian and low colonial influence, old‐growth forests carrying pre‐Columbian ecological legacies would be prevalent. Regions occupied by Indigenous groups post‐1492 CE would also carry similar ecological legacies. In regions influenced by the Jesuits, mid‐successional forests are expected to be enriched with cacao trees. In regions of latex extraction during the rubber boom, mid‐growth forests would present high abundances of early and mid‐successional species and depletion of some species. In deforested areas, we expect early successional forests with influence of exotic useful species. This patchwork of history probably plays a large role in shaping today's forests, and the biodiversity and carbon dynamics documented within them. Paleoecological work focusing on the last millennium, although scarce, has the potential to detect these mosaics of past human influence, and they should be considered when estimating forest ages and successional stages across the basin.
{"title":"Indigenous and colonial influences on Amazonian forests","authors":"M. N. Nascimento, Teye F. N. Aukes, C. McMichael","doi":"10.1002/ppp3.10515","DOIUrl":"https://doi.org/10.1002/ppp3.10515","url":null,"abstract":"Global climate models that incorporate carbon sources and sinks usually consider that forest uptake of carbon is in a state of equilibrium. Both historical and paleoecological records suggest that this is commonly not the case for Amazonia. Here, the impacts of colonial practices on Amazonian Indigenous peoples and forests are reviewed. Human activities affect forests' successional stages, trajectories, and species composition. By increasing the spatial coverage of paleoecological records that focus on pre‐ and post‐Columbian periods, the long‐term interactions between humans and Amazonian forests and their role in affecting Earth's climate may be better understood.Legacy effects left by the activities of Indigenous people in Amazonia are well known. Although severe, widespread, and recently occurring, the impacts left post‐1492 CE have been less investigated. We review the impact of colonial practices on Indigenous peoples and Amazonian forests. We suggest that forests comprise the sum of their past events, in a mosaic of different cumulative successional trajectories depending on the type, frequency, intensity, and timing of human influence. In regions with a history of minimal human influence, old‐growth species sensitive to fire would be the dominant landscape. In regions with high pre‐Columbian and low colonial influence, old‐growth forests carrying pre‐Columbian ecological legacies would be prevalent. Regions occupied by Indigenous groups post‐1492 CE would also carry similar ecological legacies. In regions influenced by the Jesuits, mid‐successional forests are expected to be enriched with cacao trees. In regions of latex extraction during the rubber boom, mid‐growth forests would present high abundances of early and mid‐successional species and depletion of some species. In deforested areas, we expect early successional forests with influence of exotic useful species. This patchwork of history probably plays a large role in shaping today's forests, and the biodiversity and carbon dynamics documented within them. Paleoecological work focusing on the last millennium, although scarce, has the potential to detect these mosaics of past human influence, and they should be considered when estimating forest ages and successional stages across the basin.","PeriodicalId":508327,"journal":{"name":"PLANTS, PEOPLE, PLANET","volume":" 3","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140997109","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
K. Suetsugu, Osamu Kimura‐Yokoyama, Shumpei Kitamura
This study illuminates the underappreciated role of invertebrates in seed dispersal, extending beyond the well‐documented contributions of ants. Focusing on Monotropastrum humile (銀竜草 [silver dragon plant] or 水晶蘭 [crystal orchid]), a non‐photosynthetic plant known for its minuscule, dust‐like seeds, the present research uncovers their seed dispersal roles of woodlice and earwigs in Japan. Remarkably, these invertebrates include the smallest known endozoochorous seed dispersers. Endozoochory, or internal seed dispersal through the digestive tracts of animals, has been less studied in invertebrates compared with vertebrates. Nonetheless, endozoochory is plausible whenever seeds are small enough for ingestion by frugivorous animals, suggesting a potential role for invertebrates in seed dispersal, especially for plants with minute seeds. Monotropastrum humile (Ericaceae), characterized by its fleshy fruits and dust‐like seeds, is known to utilize invertebrate agents such as camel crickets and cockroaches for seed dispersal. Here, we investigate this seed dispersal mechanism using time‐lapse photography, feeding experiments, and seed coat anatomy analysis, particularly focusing on interactions among undocumented invertebrate internal seed dispersers. Field observations indicated that in the studied population, M. humile fruits were primarily consumed by camel crickets, woodlice, and earwigs. Their effectiveness as seed dispersers varied, with camel crickets primarily acting as dispersers, whereas earwigs and woodlice were more inclined toward seed predation. Nonetheless, some seeds defecated by earwigs and woodlice remained intact, suggesting that they could also function as dispersal agents. The woodlouse Porcellio scaber is now recognized as the world's smallest internal seed dispersal agent. Combined with earlier discoveries, such as seed dispersal by camel crickets, cockroaches, and ants, and the fact that P. scaber is an exotic species in the study site, M. humile likely depends on a broad spectrum of local invertebrates. The engagement of multiple invertebrate dispersers may enhance seed dispersal across diverse habitats.
{"title":"Earwigs and woodlice as some of the world's smallest internal seed dispersal agents: Insights from the ecology of Monotropastrum humile (Ericaceae)","authors":"K. Suetsugu, Osamu Kimura‐Yokoyama, Shumpei Kitamura","doi":"10.1002/ppp3.10519","DOIUrl":"https://doi.org/10.1002/ppp3.10519","url":null,"abstract":"This study illuminates the underappreciated role of invertebrates in seed dispersal, extending beyond the well‐documented contributions of ants. Focusing on Monotropastrum humile (銀竜草 [silver dragon plant] or 水晶蘭 [crystal orchid]), a non‐photosynthetic plant known for its minuscule, dust‐like seeds, the present research uncovers their seed dispersal roles of woodlice and earwigs in Japan. Remarkably, these invertebrates include the smallest known endozoochorous seed dispersers.\u0000\u0000Endozoochory, or internal seed dispersal through the digestive tracts of animals, has been less studied in invertebrates compared with vertebrates. Nonetheless, endozoochory is plausible whenever seeds are small enough for ingestion by frugivorous animals, suggesting a potential role for invertebrates in seed dispersal, especially for plants with minute seeds.\u0000Monotropastrum humile (Ericaceae), characterized by its fleshy fruits and dust‐like seeds, is known to utilize invertebrate agents such as camel crickets and cockroaches for seed dispersal. Here, we investigate this seed dispersal mechanism using time‐lapse photography, feeding experiments, and seed coat anatomy analysis, particularly focusing on interactions among undocumented invertebrate internal seed dispersers.\u0000Field observations indicated that in the studied population, M. humile fruits were primarily consumed by camel crickets, woodlice, and earwigs. Their effectiveness as seed dispersers varied, with camel crickets primarily acting as dispersers, whereas earwigs and woodlice were more inclined toward seed predation. Nonetheless, some seeds defecated by earwigs and woodlice remained intact, suggesting that they could also function as dispersal agents.\u0000The woodlouse Porcellio scaber is now recognized as the world's smallest internal seed dispersal agent. Combined with earlier discoveries, such as seed dispersal by camel crickets, cockroaches, and ants, and the fact that P. scaber is an exotic species in the study site, M. humile likely depends on a broad spectrum of local invertebrates. The engagement of multiple invertebrate dispersers may enhance seed dispersal across diverse habitats.\u0000","PeriodicalId":508327,"journal":{"name":"PLANTS, PEOPLE, PLANET","volume":" 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140998118","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A. Tamang, M. Macharia, L. Caproni, Mara Miculan, Svenja Mager, J. S. Ahmed, Tashi Yangzome, M. E. Pè, Matteo Dell’Acqua
Bhutan is an ancient kingdom in the Himalayan range and one of the most rugged, geodiverse, and mountainous agricultural countries in the world. Historically secluded and geographically isolated, Bhutan is a hotspot for Himalayan agrobiodiversity where small‐scale agriculture supports the livelihoods of a large share of the resident population. Here, Bhutanese maize agrobiodiversity is explored to unlock its adaptation potential using genomics and participatory variety selection in combination with climate research. We show that Bhutanese traditional farmers maintain a wealth of diversity that may support the sustainable intensification of maize cropping in the Himalayas and beyond. Bhutan, an ancient kingdom enshrouded in the Himalayas, hosts largely untapped agrobiodiversity that may harness genetic variation useful for adaptation to local climates and user needs. Here, we genotyped‐by‐sequencing 351 pooled samples of local maize (Zea mays L.) landraces, the entire collection of the Bhutan National Gene Bank, comparing their genomic diversity with maize from other countries in the Himalayan range. We reconstructed the adaptation of Bhutanese maize to historical and projected climates, identifying areas of future maladaptation. We then run a common garden experiment involving local smallholder farmers in a participatory evaluation of landraces' performance, aiming at the identification of quantitative trait nucleotides (QTNs) contributing to adaptation, performance, and farmers' choice. We found that Bhutanese maize agrobiodiversity is unique in the Himalayan range, and a locus on Chromosome 5 supports the differentiation of three distinct genetic clusters. We found that a portion of current genomic diversity can be associated with the Bhutanese landscape and that maize cultivation in the southwest of the country may be negatively impacted by projected climates. We also found that Bhutanese maize agrobiodiversity is large and may contribute to adaptation and improvement. A genome‐wide association study identified 117 QTNs for climatic adaptation, agronomic performance, and farmers' preferences. Our results show that Bhutanese maize landraces are a unique source of genetic agrobiodiversity for local adaptation. We found that the integration of genomics, climate science, and participatory methods can speed up the identification of genetic factors contributing to the sustainable intensification of maize cultivation in the Himalayas and beyond.
{"title":"Genomic, climatic, and cultural diversity of maize landraces from the Himalayan Kingdom of Bhutan","authors":"A. Tamang, M. Macharia, L. Caproni, Mara Miculan, Svenja Mager, J. S. Ahmed, Tashi Yangzome, M. E. Pè, Matteo Dell’Acqua","doi":"10.1002/ppp3.10513","DOIUrl":"https://doi.org/10.1002/ppp3.10513","url":null,"abstract":"Bhutan is an ancient kingdom in the Himalayan range and one of the most rugged, geodiverse, and mountainous agricultural countries in the world. Historically secluded and geographically isolated, Bhutan is a hotspot for Himalayan agrobiodiversity where small‐scale agriculture supports the livelihoods of a large share of the resident population. Here, Bhutanese maize agrobiodiversity is explored to unlock its adaptation potential using genomics and participatory variety selection in combination with climate research. We show that Bhutanese traditional farmers maintain a wealth of diversity that may support the sustainable intensification of maize cropping in the Himalayas and beyond.\u0000Bhutan, an ancient kingdom enshrouded in the Himalayas, hosts largely untapped agrobiodiversity that may harness genetic variation useful for adaptation to local climates and user needs.\u0000Here, we genotyped‐by‐sequencing 351 pooled samples of local maize (Zea mays L.) landraces, the entire collection of the Bhutan National Gene Bank, comparing their genomic diversity with maize from other countries in the Himalayan range. We reconstructed the adaptation of Bhutanese maize to historical and projected climates, identifying areas of future maladaptation. We then run a common garden experiment involving local smallholder farmers in a participatory evaluation of landraces' performance, aiming at the identification of quantitative trait nucleotides (QTNs) contributing to adaptation, performance, and farmers' choice.\u0000We found that Bhutanese maize agrobiodiversity is unique in the Himalayan range, and a locus on Chromosome 5 supports the differentiation of three distinct genetic clusters. We found that a portion of current genomic diversity can be associated with the Bhutanese landscape and that maize cultivation in the southwest of the country may be negatively impacted by projected climates. We also found that Bhutanese maize agrobiodiversity is large and may contribute to adaptation and improvement. A genome‐wide association study identified 117 QTNs for climatic adaptation, agronomic performance, and farmers' preferences.\u0000Our results show that Bhutanese maize landraces are a unique source of genetic agrobiodiversity for local adaptation. We found that the integration of genomics, climate science, and participatory methods can speed up the identification of genetic factors contributing to the sustainable intensification of maize cultivation in the Himalayas and beyond.\u0000","PeriodicalId":508327,"journal":{"name":"PLANTS, PEOPLE, PLANET","volume":"31 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141025877","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Morels (Morchella spp.) are specialty mushrooms that fetch high prices from wild‐foraged or indoor grown suppliers. Outdoor cultivation could expand availability and diversify morel crops. Participatory research trials in the United States during 2021–2023 resulted in low, uneven yields. Cost accounting reveals that in 2023, a producer needed to achieve an average morel yield of 0.16 lb/ft of row to break even. This threshold was sensitive to prices and labor costs. While these findings are preliminary due to a small sample and experimental conditions, they establish baseline indicators for the yields needed for outdoor morel cultivation to break even financially.
{"title":"Breakeven yields for cultivated morel mushrooms (Morchella spp.) in the US North Central region","authors":"Seo Woo Lee, S. Swinton, Gregory Bonito","doi":"10.1002/ppp3.10514","DOIUrl":"https://doi.org/10.1002/ppp3.10514","url":null,"abstract":"Morels (Morchella spp.) are specialty mushrooms that fetch high prices from wild‐foraged or indoor grown suppliers. Outdoor cultivation could expand availability and diversify morel crops. Participatory research trials in the United States during 2021–2023 resulted in low, uneven yields. Cost accounting reveals that in 2023, a producer needed to achieve an average morel yield of 0.16 lb/ft of row to break even. This threshold was sensitive to prices and labor costs. While these findings are preliminary due to a small sample and experimental conditions, they establish baseline indicators for the yields needed for outdoor morel cultivation to break even financially.","PeriodicalId":508327,"journal":{"name":"PLANTS, PEOPLE, PLANET","volume":"52 12","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140701411","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Timothy Harris, G. Ottaviani, Mark Mulligan, Neil Brummitt
Proposals to increase protected area networks to 30% of land area globally will, given habitat conversion, require ecosystem restoration. Trait‐based approaches provide tools for this and highlight priorities for protected area expansion—both where functional diversity has the highest values and where it is higher than expected given species richness. Maps of sampled angiosperm species from across Africa show where these diversity metrics deviate. These maps also show the 30% of land with greatest potential to support functional diversity at national and continental scales, of which less than a quarter is protected, demonstrating the need for coordinated trans‐national plant conservation efforts.
{"title":"30 by 30 for plant diversity: How can we protect more of nature?","authors":"Timothy Harris, G. Ottaviani, Mark Mulligan, Neil Brummitt","doi":"10.1002/ppp3.10512","DOIUrl":"https://doi.org/10.1002/ppp3.10512","url":null,"abstract":"Proposals to increase protected area networks to 30% of land area globally will, given habitat conversion, require ecosystem restoration. Trait‐based approaches provide tools for this and highlight priorities for protected area expansion—both where functional diversity has the highest values and where it is higher than expected given species richness. Maps of sampled angiosperm species from across Africa show where these diversity metrics deviate. These maps also show the 30% of land with greatest potential to support functional diversity at national and continental scales, of which less than a quarter is protected, demonstrating the need for coordinated trans‐national plant conservation efforts.","PeriodicalId":508327,"journal":{"name":"PLANTS, PEOPLE, PLANET","volume":"10 23","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140710557","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Davide Panzeri, Elisa Toini, J. Vertemara, Giuseppe Silvestri, Victor Vladut Bunea, G. Zecca, W. Nissim, R. Wagensommer, Giuseppe Zampella, M. Labra, Fabrizio Grassi
The legume crop cowpea is grown worldwide, but 90% of the world's total share is produced in Africa. It is a promising species due to its resilience properties, balance of macro and micronutrients and presence of health‐promoting bioactive compounds. In African countries, cowpea has a crucial role in guaranteeing food security as a subsistence crop for families and commercial income for small farmers. The discovery of compounds with high nutraceutical value and bioactive properties supports socio‐economic policies to improve health and nutrition, especially in low‐ and middle‐income countries. In turn, this encourages biodiversity protection and crop enhancement programmes. Bowman–Birk protease inhibitors (BBIs) are a restricted group of small proteins in plants mainly involved in defence mechanisms against pests. BBIs are demonstrated to be active components capable of reducing the viabilities of different cancer cell lines. BBI bioactivity is directly linked to the inhibition capacity, but the variability and the efficiency against the physiological targets of different BBI isoforms remain still unexplored. We analysed the natural genetic diversity of two main genes encoding BBI trypsin‐trypsin (BBI‐TT) and trypsin‐chymotrypsin (BBI‐TC) in wild and domesticated cowpea samples mainly spread in Sub‐Saharan Africa. We analysed DNA sequences and respective amino acidic isoforms/isoproteins to explore signs of natural selection and haplotype relationships. Moreover, we calculated the binding energy between BBIs and their biological targets to identify which are the most efficient inhibitors and their geographical locations. We found a high level of haplotype diversity for both genes, almost exclusively in wild accessions and detected positive and negative selection signals in the amino acid sequences. Furthermore, in the wild diversity pool, some BBI‐TT and BBI‐TC mature proteins were potentially better interactors with the physiological targets. The long interaction between plant‐pathogen has selected new and useful isoforms in wild lineages that have allowed the chances of survival of the species to improve. On the other hand, the domestication process has produced an intense bottleneck leaving only poorly efficient BBI variants. In addition to providing information on the natural diversity and evolution of BBIs, our work discusses the potential applications in agriculture and human health.
{"title":"Small proteins, great promises: Geographic bioprospecting of Bowman–Birk protease inhibitors and domestication side‐effects in African cowpea (Vigna unguiculata L.)","authors":"Davide Panzeri, Elisa Toini, J. Vertemara, Giuseppe Silvestri, Victor Vladut Bunea, G. Zecca, W. Nissim, R. Wagensommer, Giuseppe Zampella, M. Labra, Fabrizio Grassi","doi":"10.1002/ppp3.10507","DOIUrl":"https://doi.org/10.1002/ppp3.10507","url":null,"abstract":"The legume crop cowpea is grown worldwide, but 90% of the world's total share is produced in Africa. It is a promising species due to its resilience properties, balance of macro and micronutrients and presence of health‐promoting bioactive compounds. In African countries, cowpea has a crucial role in guaranteeing food security as a subsistence crop for families and commercial income for small farmers. The discovery of compounds with high nutraceutical value and bioactive properties supports socio‐economic policies to improve health and nutrition, especially in low‐ and middle‐income countries. In turn, this encourages biodiversity protection and crop enhancement programmes.\u0000\u0000Bowman–Birk protease inhibitors (BBIs) are a restricted group of small proteins in plants mainly involved in defence mechanisms against pests. BBIs are demonstrated to be active components capable of reducing the viabilities of different cancer cell lines. BBI bioactivity is directly linked to the inhibition capacity, but the variability and the efficiency against the physiological targets of different BBI isoforms remain still unexplored.\u0000We analysed the natural genetic diversity of two main genes encoding BBI trypsin‐trypsin (BBI‐TT) and trypsin‐chymotrypsin (BBI‐TC) in wild and domesticated cowpea samples mainly spread in Sub‐Saharan Africa. We analysed DNA sequences and respective amino acidic isoforms/isoproteins to explore signs of natural selection and haplotype relationships. Moreover, we calculated the binding energy between BBIs and their biological targets to identify which are the most efficient inhibitors and their geographical locations.\u0000We found a high level of haplotype diversity for both genes, almost exclusively in wild accessions and detected positive and negative selection signals in the amino acid sequences. Furthermore, in the wild diversity pool, some BBI‐TT and BBI‐TC mature proteins were potentially better interactors with the physiological targets.\u0000The long interaction between plant‐pathogen has selected new and useful isoforms in wild lineages that have allowed the chances of survival of the species to improve. On the other hand, the domestication process has produced an intense bottleneck leaving only poorly efficient BBI variants. In addition to providing information on the natural diversity and evolution of BBIs, our work discusses the potential applications in agriculture and human health.\u0000","PeriodicalId":508327,"journal":{"name":"PLANTS, PEOPLE, PLANET","volume":"56 9","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140721601","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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