首页 > 最新文献

Antarctic Science最新文献

英文 中文
Seasonal shifts in microbial diversity in the lakes of Fildes Peninsula, King George Island, Maritime Antarctica 南极海洋乔治王岛菲尔德斯半岛湖泊微生物多样性的季节变化
IF 1.6 4区 地球科学 Q2 Earth and Planetary Sciences Pub Date : 2023-04-01 DOI: 10.1017/S0954102023000068
Florencia Bertoglio, C. Piccini, R. Urrutia, D. Antoniades
Abstract Fildes Peninsula, on King George Island, has been greatly influenced by recent rapid climate warming. Lakes are pervasive features of Fildes Peninsula landscapes, some of which are used as water sources for Antarctic stations. We studied seven Fildes Peninsula lakes to explore differences among lakes and between seasons in phytoplankton and bacterioplankton communities. We measured environmental variables, analysed pigments using high-performance liquid chromatography and examined bacterial DNA through high-throughput sequencing of the 16S rRNA gene. The main driver structuring microbial communities was the season (i.e. spring vs autumn). Chlorophyceae were the dominant phytoplankton group in all lakes and both seasons. Indicator bacteria for each season were identified, including Flavobacterium, Polaromonas and Oxalobacteraceae as indicators of spring conditions under thick ice, whereas Frankiales and Verrucomicrobia were indicator species of autumn following the ice-free summer. The indicator species for spring are generally observed in oligotrophic conditions, whereas many of the autumn indicators are commonly found in soils. There were lesser between-lake differences in microbial communities in autumn, at the end of the open-water period, than in spring at the end of the ice-covered period. This study will act as the basis for future assessments of changes in aquatic microbial communities.
位于乔治国王岛的菲尔德斯半岛受到近年来快速气候变暖的影响很大。湖泊是菲尔德斯半岛景观的普遍特征,其中一些被用作南极站的水源。以菲尔德斯半岛7个湖泊为研究对象,探讨湖泊间和季节间浮游植物和浮游细菌群落的差异。我们测量了环境变量,使用高效液相色谱分析色素,并通过16S rRNA基因的高通量测序来检测细菌DNA。构建微生物群落的主要驱动因素是季节(即春季与秋季)。所有湖泊和两个季节的浮游植物类群均以绿藻类为主。确定了各季节的指示菌,其中Flavobacterium、Polaromonas和Oxalobacteraceae是厚冰条件下春季的指示菌,而Frankiales和Verrucomicrobia是无冰夏季后秋季的指示菌。春季的指示物种通常在少营养条件下观察到,而许多秋季的指示物种通常在土壤中发现。湖泊间微生物群落的差异在开放水域期结束的秋季比在冰雪覆盖期结束的春季要小。本研究将作为今后评估水生微生物群落变化的基础。
{"title":"Seasonal shifts in microbial diversity in the lakes of Fildes Peninsula, King George Island, Maritime Antarctica","authors":"Florencia Bertoglio, C. Piccini, R. Urrutia, D. Antoniades","doi":"10.1017/S0954102023000068","DOIUrl":"https://doi.org/10.1017/S0954102023000068","url":null,"abstract":"Abstract Fildes Peninsula, on King George Island, has been greatly influenced by recent rapid climate warming. Lakes are pervasive features of Fildes Peninsula landscapes, some of which are used as water sources for Antarctic stations. We studied seven Fildes Peninsula lakes to explore differences among lakes and between seasons in phytoplankton and bacterioplankton communities. We measured environmental variables, analysed pigments using high-performance liquid chromatography and examined bacterial DNA through high-throughput sequencing of the 16S rRNA gene. The main driver structuring microbial communities was the season (i.e. spring vs autumn). Chlorophyceae were the dominant phytoplankton group in all lakes and both seasons. Indicator bacteria for each season were identified, including Flavobacterium, Polaromonas and Oxalobacteraceae as indicators of spring conditions under thick ice, whereas Frankiales and Verrucomicrobia were indicator species of autumn following the ice-free summer. The indicator species for spring are generally observed in oligotrophic conditions, whereas many of the autumn indicators are commonly found in soils. There were lesser between-lake differences in microbial communities in autumn, at the end of the open-water period, than in spring at the end of the ice-covered period. This study will act as the basis for future assessments of changes in aquatic microbial communities.","PeriodicalId":50972,"journal":{"name":"Antarctic Science","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45043470","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
The sub-Antarctic islands are increasingly warming in the 21st century 21世纪,亚南极群岛正日益变暖
IF 1.6 4区 地球科学 Q2 Earth and Planetary Sciences Pub Date : 2023-04-01 DOI: 10.1017/S0954102023000056
W. Nel, D. Hedding, E. Rudolph
WERNER NEL 1, DAVID W. HEDDING 2 and ELIZABETH M. RUDOLPH 3 Department of Geography and Environmental Science, University of Fort Hare, 1 King Williamstown Road, Alice, 5700, South Africa Department of Geography, University of South Africa, Pioneer Avenue, Florida, 1710, South Africa Afromontane Research Unit, Department of Geography, University of the Free State, 205 Nelson Mandela Avenue, Bloemfontein, 9300, South Africa wnel@ufh.ac.za
WERNER NEL 1、DAVID W.HEDDING 2和ELIZABETH M.RUDOLPH 3爱丽丝威廉斯敦国王路1号黑尔堡大学地理与环境科学系,5700年,佛罗里达州先锋大道南非大学南非地理系,1710年,纳尔逊·曼德拉大道205号,自由邦大学地理系南非非洲人研究所,布隆方丹,9300,南非wnel@ufh.ac.za
{"title":"The sub-Antarctic islands are increasingly warming in the 21st century","authors":"W. Nel, D. Hedding, E. Rudolph","doi":"10.1017/S0954102023000056","DOIUrl":"https://doi.org/10.1017/S0954102023000056","url":null,"abstract":"WERNER NEL 1, DAVID W. HEDDING 2 and ELIZABETH M. RUDOLPH 3 Department of Geography and Environmental Science, University of Fort Hare, 1 King Williamstown Road, Alice, 5700, South Africa Department of Geography, University of South Africa, Pioneer Avenue, Florida, 1710, South Africa Afromontane Research Unit, Department of Geography, University of the Free State, 205 Nelson Mandela Avenue, Bloemfontein, 9300, South Africa wnel@ufh.ac.za","PeriodicalId":50972,"journal":{"name":"Antarctic Science","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44198521","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Antarctic ozone hole, ultraviolet radiation and bushfires 南极臭氧空洞、紫外线辐射和丛林大火
IF 1.6 4区 地球科学 Q2 Earth and Planetary Sciences Pub Date : 2023-04-01 DOI: 10.1017/S0954102023000081
S. Robinson
In the 1980s, British Antarctic scientists (Farman et al. 1985) discovered the hole in the ozone layer over Antarctica, and we are now familiar with images of springtime ozone depletion extending beyond the continental margins (Fig. 1a). The largest Antarctic ozone hole occurred in 2006 (Fig. 1b), but in recent years recovery has started to become apparent, with the total column ozone predicted to return to 1980 levels by 2066 (WMO 2022). However, there is still reason to be concerned about the timing and extent of ultraviolet (UV) radiation exposure in Antarctica, as well as how ozone recovery may be jeopardized by climate change-mediated events such as wildfires. The ozone layer protects the Earth's surface from damaging UV-B radiation. Recent reports demonstrate that over the period of maximum ozone depletion (1990–2020) the maximum spring UV index at Palmer Station (64°S) has increased by 2.5 times compared to the pre-ozone hole era as measured in the early 1970s. Despite the solar angle being much lower in Antarctica, the maximum UV index at Palmer Station in spring can now sometimes exceed that experienced in summer in subtropical regions (San Diego, CA, 32°N; Bernard et al. 2022; Environmental Effects Assessment Panel in press). Antarctic ozone depletion generally peaks between September and October, when most Antarctic terrestrial vegetation and soil biota will be frozen, dormant and hopefully protected under snow cover. Similarly, much marine life will be protected by sea-ice cover, although some seals and birds might be breeding on the ice at this time. Usually by the time summer arrives the ozone layer has recovered (see white lines in Fig. 1c). However, for the past 3 years ozone depletion has been extensive (Fig. 1b) and long-lasting, extending into early summer (e.g. 2022; see black lines in Fig. 1c). Since 2019, November–December total ozone column depth for latitudes 60–90°S have been the lowest since records began in the 1980s (NASA 2023). From a biologist's perspective, ozone depletion in early December is far more concerning, given that this is closer to the solstice, meaning that all solar radiation is higher, including the UV index. A peak in UV index coincident with snowmelt and the emergence of vegetation as well as during the peak breeding season at the start of the summer is of particular concern, as more biota are likely to be exposed to this higher incident UV-B radiation. For some organisms, such exposure may also occur at a more vulnerable time in their life cycles. The effects of climate change through earlier snowmelt and heatwaves (Robinson et al. 2020, Environmental Effects Assessment Panel in press) is likely to be enhancing the spring and summer UV exposure of Antarctic organisms, as noted in the latest United Nations Environment Program Environmental Effects Assessment Panel report (Barnes et al. 2023; Environmental Effects Assessment Panel in press). The Montreal Protocol is an extremely successful environment
在20世纪80年代,英国南极科学家(Farman et al. 1985)发现了南极洲上空的臭氧层空洞,我们现在熟悉了春季臭氧消耗延伸到大陆边缘以外的图像(图1a)。南极最大的臭氧空洞发生在2006年(图1b),但近年来已经开始明显恢复,预计到2066年臭氧柱总量将恢复到1980年的水平(WMO 2022)。然而,仍有理由担心南极洲紫外线照射的时间和程度,以及野火等气候变化介导的事件如何危及臭氧恢复。臭氧层保护地球表面免受有害的UV-B辐射。最近的报告表明,在最大臭氧消耗期间(1990-2020年),Palmer站(64°S)的最大春季紫外线指数与1970年代初测量的臭氧空洞前时代相比增加了2.5倍。尽管南极洲的太阳角度要低得多,但帕尔默站春季的最大紫外线指数有时会超过亚热带地区夏季的最大值(圣地亚哥,加利福尼亚,32°N;Bernard et al. 2022;环境影响评估小组(已出版)。南极臭氧消耗通常在9月至10月达到高峰,那时大多数南极陆地植被和土壤生物群将被冻结、休眠,并有望被积雪覆盖。同样,许多海洋生物将受到海冰覆盖的保护,尽管一些海豹和鸟类可能在这个时候在冰上繁殖。通常到夏季到来时,臭氧层已经恢复(见图1c中的白线)。然而,在过去3年中,臭氧消耗范围广泛(图1b)且持续时间长,一直延续到初夏(如2022年;见图1c中的黑线)。自2019年以来,60-90°S纬度地区11月至12月的臭氧柱总深度是自20世纪80年代有记录以来的最低水平(NASA 2023)。从生物学家的角度来看,12月初的臭氧消耗更令人担忧,因为这更接近冬至,这意味着所有的太阳辐射都更高,包括紫外线指数。紫外线指数的峰值与融雪和植被的出现以及夏初的繁殖期一致,这是特别值得关注的,因为更多的生物群可能会暴露在这种较高的UV- b辐射下。对某些生物来说,这种接触也可能发生在其生命周期中较脆弱的时期。正如联合国环境规划署环境影响评估小组最新报告(Barnes et al. 2023;环境影响评估小组(已出版)。《蒙特利尔议定书》是一项极为成功的环境条约。由于该条约,消耗臭氧层化合物(如氟氯化碳;氯氟烃)已经得到控制,预计到2066年臭氧层将恢复(WMO 2022)。根据《蒙特利尔议定书》及其2016年基加利修正案采取的行动也有助于减少温室气体排放和减缓全球气温上升,方法是用不会导致气候强迫的化合物取代导致温室气体排放的氟氯化碳。据估计,这已在中纬度地区防止了至少0.5-1.0°C的变暖,并在北极地区防止了超过1.0°C的变暖(WMO 2022;环境影响评估小组(已出版)。但我们不能自满。近年来观测到的延长的臭氧消耗可能在一定程度上因气候变化的影响而加剧。最近的两个大型臭氧空洞受到不同事件的影响:2019-2020年澳大利亚黑夏森林大火和2021年La Soufriere火山喷发(Yook et al. 2022)。研究表明,澳大利亚大面积的野火向平流层注入了能够消耗臭氧的气溶胶(Damany et al. 2022;Yook et al. 2022),并可能导致2020年臭氧空洞面积增大(图1b;Solomon et al. 2023)。不像臭氧的原始原因doi:10.1017/S0954102023000081
{"title":"The Antarctic ozone hole, ultraviolet radiation and bushfires","authors":"S. Robinson","doi":"10.1017/S0954102023000081","DOIUrl":"https://doi.org/10.1017/S0954102023000081","url":null,"abstract":"In the 1980s, British Antarctic scientists (Farman et al. 1985) discovered the hole in the ozone layer over Antarctica, and we are now familiar with images of springtime ozone depletion extending beyond the continental margins (Fig. 1a). The largest Antarctic ozone hole occurred in 2006 (Fig. 1b), but in recent years recovery has started to become apparent, with the total column ozone predicted to return to 1980 levels by 2066 (WMO 2022). However, there is still reason to be concerned about the timing and extent of ultraviolet (UV) radiation exposure in Antarctica, as well as how ozone recovery may be jeopardized by climate change-mediated events such as wildfires. The ozone layer protects the Earth's surface from damaging UV-B radiation. Recent reports demonstrate that over the period of maximum ozone depletion (1990–2020) the maximum spring UV index at Palmer Station (64°S) has increased by 2.5 times compared to the pre-ozone hole era as measured in the early 1970s. Despite the solar angle being much lower in Antarctica, the maximum UV index at Palmer Station in spring can now sometimes exceed that experienced in summer in subtropical regions (San Diego, CA, 32°N; Bernard et al. 2022; Environmental Effects Assessment Panel in press). Antarctic ozone depletion generally peaks between September and October, when most Antarctic terrestrial vegetation and soil biota will be frozen, dormant and hopefully protected under snow cover. Similarly, much marine life will be protected by sea-ice cover, although some seals and birds might be breeding on the ice at this time. Usually by the time summer arrives the ozone layer has recovered (see white lines in Fig. 1c). However, for the past 3 years ozone depletion has been extensive (Fig. 1b) and long-lasting, extending into early summer (e.g. 2022; see black lines in Fig. 1c). Since 2019, November–December total ozone column depth for latitudes 60–90°S have been the lowest since records began in the 1980s (NASA 2023). From a biologist's perspective, ozone depletion in early December is far more concerning, given that this is closer to the solstice, meaning that all solar radiation is higher, including the UV index. A peak in UV index coincident with snowmelt and the emergence of vegetation as well as during the peak breeding season at the start of the summer is of particular concern, as more biota are likely to be exposed to this higher incident UV-B radiation. For some organisms, such exposure may also occur at a more vulnerable time in their life cycles. The effects of climate change through earlier snowmelt and heatwaves (Robinson et al. 2020, Environmental Effects Assessment Panel in press) is likely to be enhancing the spring and summer UV exposure of Antarctic organisms, as noted in the latest United Nations Environment Program Environmental Effects Assessment Panel report (Barnes et al. 2023; Environmental Effects Assessment Panel in press). The Montreal Protocol is an extremely successful environment","PeriodicalId":50972,"journal":{"name":"Antarctic Science","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42978298","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Habitat severity characteristics structure soil communities at regional and local spatial scales along the Antarctica Peninsula 南极半岛地区和地方空间尺度上的生境严重性特征结构土壤群落
IF 1.6 4区 地球科学 Q2 Earth and Planetary Sciences Pub Date : 2023-03-01 DOI: 10.1017/S0954102023000019
B. Ball, P. Convey, K. L. Feeser, U. Nielsen, David Van Horn
Abstract Antarctic soils provide an excellent setting to test biogeographical patterns across spatial and environmental scales given their relatively simple communities and the dominance of physical factors that create strong environmental gradients. Additional urgency is given by the fact that their unique terrestrial communities are the subject of conservation efforts in a rapidly changing environment. We investigated relationships of soil community assembly and alpha and beta diversity with climatic and environmental parameters across regional and local scales in Maritime Antarctica. We sampled from a regional gradient of sites that differ in habitat severity, ranging from relatively favourable to harsher physicochemical conditions. At the regional scale, bacterial community characteristics and microarthropod abundance varied along this severity gradient, but most measures of fungal communities did not. Microarthropod and microbial communities differed in which soil and climate parameters were most influential, and the specific parameters that influenced each taxon differed across broad and fine spatial scales. This suggests that conservation efforts will need to focus on a large variety of habitat characteristics to successfully encompass diversity across taxa. Because beta diversity was the result of species turnover, conservation efforts also cannot focus on only the most biodiverse sites to effectively preserve all aspects of biodiversity.
摘要南极土壤提供了一个很好的环境,可以在空间和环境尺度上测试生物地理模式,因为它们的群落相对简单,并且物理因素占主导地位,形成了强烈的环境梯度。在快速变化的环境中,它们独特的陆地群落是保护工作的主题,这一事实也带来了额外的紧迫性。我们调查了南极洲海洋地区和地方尺度上土壤群落组合、α和β多样性与气候和环境参数的关系。我们从栖息地严重程度不同的区域梯度进行采样,从相对有利到更恶劣的物理化学条件不等。在区域范围内,细菌群落特征和微丝足类丰度沿着这一严重程度梯度变化,但大多数真菌群落指标没有变化。微型节肢动物和微生物群落在土壤和气候参数最具影响力方面存在差异,影响每个分类单元的具体参数在广阔和精细的空间尺度上也存在差异。这表明,保护工作需要关注各种各样的栖息地特征,才能成功地涵盖不同分类群的多样性。由于贝塔多样性是物种更替的结果,保护工作也不能只关注生物多样性最强的地点,以有效保护生物多样性的各个方面。
{"title":"Habitat severity characteristics structure soil communities at regional and local spatial scales along the Antarctica Peninsula","authors":"B. Ball, P. Convey, K. L. Feeser, U. Nielsen, David Van Horn","doi":"10.1017/S0954102023000019","DOIUrl":"https://doi.org/10.1017/S0954102023000019","url":null,"abstract":"Abstract Antarctic soils provide an excellent setting to test biogeographical patterns across spatial and environmental scales given their relatively simple communities and the dominance of physical factors that create strong environmental gradients. Additional urgency is given by the fact that their unique terrestrial communities are the subject of conservation efforts in a rapidly changing environment. We investigated relationships of soil community assembly and alpha and beta diversity with climatic and environmental parameters across regional and local scales in Maritime Antarctica. We sampled from a regional gradient of sites that differ in habitat severity, ranging from relatively favourable to harsher physicochemical conditions. At the regional scale, bacterial community characteristics and microarthropod abundance varied along this severity gradient, but most measures of fungal communities did not. Microarthropod and microbial communities differed in which soil and climate parameters were most influential, and the specific parameters that influenced each taxon differed across broad and fine spatial scales. This suggests that conservation efforts will need to focus on a large variety of habitat characteristics to successfully encompass diversity across taxa. Because beta diversity was the result of species turnover, conservation efforts also cannot focus on only the most biodiverse sites to effectively preserve all aspects of biodiversity.","PeriodicalId":50972,"journal":{"name":"Antarctic Science","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47693382","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Extreme cold (−69.1°C) in the McMurdo Dry Valleys 麦克默多干旱山谷的极端寒冷(−69.1°C)
IF 1.6 4区 地球科学 Q2 Earth and Planetary Sciences Pub Date : 2023-03-01 DOI: 10.1017/S0954102022000451
P. Doran, K. Myers, C. Mckay, D. Bromwich
The McMurdo Dry Valleys in East Antarctica represents the largest ice-free area on the continent. In 1993, the National Science Foundation (NSF) funded the McMurdo Long Term Ecological Research (MCM LTER) site, which built a meteorological network that included a station on the shore of Lake Vida (LVi) in Victoria Valley (VV) installed in 1995 (Doran et al. 1995). This Short Note describes the conditions surrounding the lowest temperature ever recorded in the McMurdo Dry Valleys at LVi and compares them to other nearby meteorological stations.
东南极洲的麦克默多干谷是南极洲最大的无冰区。1993年,美国国家科学基金会(NSF)资助了麦克默多长期生态研究(MCM LTER)站点,该站点建立了一个气象网络,其中包括1995年在维多利亚谷(VV)维达湖(LVi)岸边安装的一个站点(Doran et al. 1995)。这篇短文描述了LVi麦克默多干谷有史以来记录的最低温度周围的条件,并将它们与附近的其他气象站进行了比较。
{"title":"Extreme cold (−69.1°C) in the McMurdo Dry Valleys","authors":"P. Doran, K. Myers, C. Mckay, D. Bromwich","doi":"10.1017/S0954102022000451","DOIUrl":"https://doi.org/10.1017/S0954102022000451","url":null,"abstract":"The McMurdo Dry Valleys in East Antarctica represents the largest ice-free area on the continent. In 1993, the National Science Foundation (NSF) funded the McMurdo Long Term Ecological Research (MCM LTER) site, which built a meteorological network that included a station on the shore of Lake Vida (LVi) in Victoria Valley (VV) installed in 1995 (Doran et al. 1995). This Short Note describes the conditions surrounding the lowest temperature ever recorded in the McMurdo Dry Valleys at LVi and compares them to other nearby meteorological stations.","PeriodicalId":50972,"journal":{"name":"Antarctic Science","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44338461","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Soil environmental DNA metabarcoding in low-biomass regions requires protocol optimization: a case study in Antarctica 低生物量地区土壤环境DNA代谢编码需要方案优化:以南极洲为例
IF 1.6 4区 地球科学 Q2 Earth and Planetary Sciences Pub Date : 2023-02-01 DOI: 10.1017/S0954102022000384
Pamela Olmedo-Rojas, Gert‐Jan Jeunen, M. Lamare, Johanna D. Turnbull, A. Terauds, N. Gemmell, Ceridwen I. Fraser
Abstract Environmental DNA is a powerful tool for monitoring biodiversity. Although environmental DNA surveys have successfully been implemented in various environments, protocol choice has been shown to affect results and inferences. Thus far, few method comparison studies for soil have been undertaken. Here, we optimized the workflow for soil metabarcoding through a comparative study encompassing variation in sampling strategy (individual and combined samples), DNA extraction (PowerSoil®, NucleoSpin® Soil, PowerSoil® + phosphate buffer and NucleoSpin® Soil + phosphate buffer) and library preparation (one-step and two-step quantitative polymerase chain reaction methods). Using a partial 18S rRNA marker, a total of 309 eukaryotic taxa across 21 phyla were identified from Antarctic soil from one site in the Larsemann Hills. Our optimized workflow was effective with no notable reduction in data quality for a considerable increase in time and cost efficiency. The NucleoSpin® Soil + phosphate buffer was the best-performing extraction method. Compared to similar studies in other regions, we obtained low taxonomic coverage, perhaps because of the paucity of Antarctic terrestrial organisms in genetic reference databases. Our findings provide useful methodological insights for maximizing efficiency in soil metabarcoding studies in Antarctica and other low-biomass environments.
摘要环境DNA是监测生物多样性的有力工具。尽管环境DNA调查已在各种环境中成功实施,但方案选择已被证明会影响结果和推断。到目前为止,很少对土壤进行方法比较研究。在这里,我们通过一项比较研究优化了土壤代谢编码的工作流程,包括采样策略(单个和组合样本)、DNA提取(PowerSoil®、NucleoSpin®土壤、PowerSoil™+磷酸盐缓冲液和NucleoSin®土壤+磷酸盐缓冲剂)和文库制备(一步和两步定量聚合酶链式反应方法)的变化。使用部分18S rRNA标记,在Larsemann Hills的一个地点从南极土壤中鉴定出21个门的309个真核生物类群。我们优化的工作流程非常有效,数据质量没有显著降低,大大提高了时间和成本效率。NucleoSpin®土壤+磷酸盐缓冲液是性能最好的提取方法。与其他地区的类似研究相比,我们获得了较低的分类学覆盖率,这可能是因为遗传参考数据库中南极陆地生物的数量很少。我们的发现为最大限度地提高南极洲和其他低生物量环境中土壤代谢编码研究的效率提供了有用的方法学见解。
{"title":"Soil environmental DNA metabarcoding in low-biomass regions requires protocol optimization: a case study in Antarctica","authors":"Pamela Olmedo-Rojas, Gert‐Jan Jeunen, M. Lamare, Johanna D. Turnbull, A. Terauds, N. Gemmell, Ceridwen I. Fraser","doi":"10.1017/S0954102022000384","DOIUrl":"https://doi.org/10.1017/S0954102022000384","url":null,"abstract":"Abstract Environmental DNA is a powerful tool for monitoring biodiversity. Although environmental DNA surveys have successfully been implemented in various environments, protocol choice has been shown to affect results and inferences. Thus far, few method comparison studies for soil have been undertaken. Here, we optimized the workflow for soil metabarcoding through a comparative study encompassing variation in sampling strategy (individual and combined samples), DNA extraction (PowerSoil®, NucleoSpin® Soil, PowerSoil® + phosphate buffer and NucleoSpin® Soil + phosphate buffer) and library preparation (one-step and two-step quantitative polymerase chain reaction methods). Using a partial 18S rRNA marker, a total of 309 eukaryotic taxa across 21 phyla were identified from Antarctic soil from one site in the Larsemann Hills. Our optimized workflow was effective with no notable reduction in data quality for a considerable increase in time and cost efficiency. The NucleoSpin® Soil + phosphate buffer was the best-performing extraction method. Compared to similar studies in other regions, we obtained low taxonomic coverage, perhaps because of the paucity of Antarctic terrestrial organisms in genetic reference databases. Our findings provide useful methodological insights for maximizing efficiency in soil metabarcoding studies in Antarctica and other low-biomass environments.","PeriodicalId":50972,"journal":{"name":"Antarctic Science","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43033253","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
What is the place of science in Antarctica? 科学在南极洲的地位是什么?
IF 1.6 4区 地球科学 Q2 Earth and Planetary Sciences Pub Date : 2023-02-01 DOI: 10.1017/S095410202300007X
P. Convey
TheAntarctic Treaty System (ATS) is often paraphrased as providing the means by which Antarctica is protected as a 'continent for peace and science', on the face of it meaning that the primary purpose of humans being present in Antarctica is for the advancement of scientific knowledge. As is well known, some of the earliest expeditions to Antarctica placed scientific discovery and exploration amongst their highest priorities. Scientific research in Antarctica really took off with the International Geophysical Year of 1957/58, illustrating that even then the importance of Antarctica in the global system and for the advancement of science was starting to be appreciated. Even today, the lack of knowledge of parts of the continent and surrounding ocean, and/or within particular disciplines, means that 'discovery science' still has a major role to play. With today's emphasis and focus on the multifaceted field of 'global climate change', it is often easy to forget that little more than 30 years ago the concept was barely mentioned or its importance widely appreciated. So, what were the major drivers of the rapid development of Antarctic science in the midto late-20 Century, before 'climate fever' took over, and to what extent do these still apply? Perhaps more provocatively, does science itself really drive the actions and plans of those nations operating in Antarctica, or is it more accurate to see 'the tail wagging the dog', with scientific priorities and cooperation trailing behind geopolitical manoeuvring and the maximising of national prestige within the ATS? Antarctica has always fascinated humans, whether scientists or not. From both scientific and personal perspectives, it provides some of the planet's extremes and superlatives. With most of the world's ice, lowest temperatures, importance as an upper atmospheric and space observatory and surrounded by the most powerful ocean current, it has long been central to glaciological, geological, tectonic, atmospheric and oceanographic studies. Its extreme environments quickly catalysed research into the evolution and exceptional survival abilities of its resident biota – remarkably diverse in the surrounding ocean and equally remarkably sparse on land, but both sharing very long-term histories in the region. There is still much to learn in all these fields, especially at the boundaries between traditionally distinct disciplines, in what used to be known as 'pure' research, or philosophical recognition of the value of knowledge itself. In today's world, Antarctica and the Southern Ocean play key roles as 'sentinels' for change across the globe, not only relating to climate, but also areas like pollution, erosion of biogeography, space weather and the importance of wilderness values. Their roles as the 'engine' for the global ocean circulation system and a key driver of global climate now take prominence. However, it could be suggested that researchers who cannot connect what they do in someway to 'cli
然而,看似矛盾的是,多个国家最近、现在或很快将参与大型车站重建和扩建计划,或建造全新的车站或后勤设施(如飞机跑道)。doi:10.1017/S095410202300007X
{"title":"What is the place of science in Antarctica?","authors":"P. Convey","doi":"10.1017/S095410202300007X","DOIUrl":"https://doi.org/10.1017/S095410202300007X","url":null,"abstract":"TheAntarctic Treaty System (ATS) is often paraphrased as providing the means by which Antarctica is protected as a 'continent for peace and science', on the face of it meaning that the primary purpose of humans being present in Antarctica is for the advancement of scientific knowledge. As is well known, some of the earliest expeditions to Antarctica placed scientific discovery and exploration amongst their highest priorities. Scientific research in Antarctica really took off with the International Geophysical Year of 1957/58, illustrating that even then the importance of Antarctica in the global system and for the advancement of science was starting to be appreciated. Even today, the lack of knowledge of parts of the continent and surrounding ocean, and/or within particular disciplines, means that 'discovery science' still has a major role to play. With today's emphasis and focus on the multifaceted field of 'global climate change', it is often easy to forget that little more than 30 years ago the concept was barely mentioned or its importance widely appreciated. So, what were the major drivers of the rapid development of Antarctic science in the midto late-20 Century, before 'climate fever' took over, and to what extent do these still apply? Perhaps more provocatively, does science itself really drive the actions and plans of those nations operating in Antarctica, or is it more accurate to see 'the tail wagging the dog', with scientific priorities and cooperation trailing behind geopolitical manoeuvring and the maximising of national prestige within the ATS? Antarctica has always fascinated humans, whether scientists or not. From both scientific and personal perspectives, it provides some of the planet's extremes and superlatives. With most of the world's ice, lowest temperatures, importance as an upper atmospheric and space observatory and surrounded by the most powerful ocean current, it has long been central to glaciological, geological, tectonic, atmospheric and oceanographic studies. Its extreme environments quickly catalysed research into the evolution and exceptional survival abilities of its resident biota – remarkably diverse in the surrounding ocean and equally remarkably sparse on land, but both sharing very long-term histories in the region. There is still much to learn in all these fields, especially at the boundaries between traditionally distinct disciplines, in what used to be known as 'pure' research, or philosophical recognition of the value of knowledge itself. In today's world, Antarctica and the Southern Ocean play key roles as 'sentinels' for change across the globe, not only relating to climate, but also areas like pollution, erosion of biogeography, space weather and the importance of wilderness values. Their roles as the 'engine' for the global ocean circulation system and a key driver of global climate now take prominence. However, it could be suggested that researchers who cannot connect what they do in someway to 'cli","PeriodicalId":50972,"journal":{"name":"Antarctic Science","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46552589","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Antarctic science in Chile: a bibliometric analysis of scientific productivity during the 2009–2019 period 智利的南极科学:2009-2019年期间科学生产力的文献计量分析
IF 1.6 4区 地球科学 Q2 Earth and Planetary Sciences Pub Date : 2023-02-01 DOI: 10.1017/S0954102022000487
M. González-Aravena, L. Krüger, L. Rebolledo, R. Jaña, A. Aguayo‐Lobo, Marcelo A. Leppe, R. Rondón, F. Santa-Cruz, Carla Salinas, C. Trevisan, C. A. Cárdenas
Abstract The changes implemented in 2005 in the development strategies of Antarctic science carried out by Chile have had a positive impact on the scientific productivity of the Chilean Antarctic Science Program (PROCIEN). We analysed scientometric indicators from between 2009 and 2019. The bibliographic data were extracted from the Web of Science database using search query keywords. We used multiple correspondence analysis to identify specific trends and also network analyses of international collaboration in VOSviewer. The number of Antarctic science publications in Chile has gradually increased from 21 in 2009 to 95 in 2019. The rise in the number of articles was higher in journals for the first impact factor quartile. Research lines showing increased first-quartile impact factor papers corresponded to Antarctic ecosystems, biotechnology and geosciences. The main geographical domains in which such research activities have been carried out corresponded to in the South Shetland Islands and the Antarctic Peninsula. Fieldwork data are the main sources for the production of scientific articles, and there are three science platforms within which most of these papers concentrate. The diversification of funding sources, the implementation of improvements in the selection process and Chile's alignment with Scientific Committee on Antarctic Research programmes have contributed to improving the science that Chile has developed in Antarctica.
摘要智利在2005年实施的南极科学发展战略的变化对智利南极科学计划(PROCIEN)的科学生产力产生了积极影响。我们分析了2009年至2019年间的科学计量指标。书目数据是使用搜索查询关键字从Web of Science数据库中提取的。我们使用了多重对应分析来确定具体趋势,并对VOSviewer的国际合作进行了网络分析。智利的南极科学出版物数量从2009年的21份逐渐增加到2019年的95份。在第一影响因子四分位数的期刊上,文章数量的增长更高。显示第一个四分位数影响因子论文增加的研究线与南极生态系统、生物技术和地球科学相对应。开展此类研究活动的主要地理区域对应于南设得兰群岛和南极半岛。实地调查数据是撰写科学文章的主要来源,这些论文大多集中在三个科学平台上。资金来源的多样化、选拔过程的改进以及智利与南极研究科学委员会方案的一致性,都有助于改进智利在南极发展的科学。
{"title":"Antarctic science in Chile: a bibliometric analysis of scientific productivity during the 2009–2019 period","authors":"M. González-Aravena, L. Krüger, L. Rebolledo, R. Jaña, A. Aguayo‐Lobo, Marcelo A. Leppe, R. Rondón, F. Santa-Cruz, Carla Salinas, C. Trevisan, C. A. Cárdenas","doi":"10.1017/S0954102022000487","DOIUrl":"https://doi.org/10.1017/S0954102022000487","url":null,"abstract":"Abstract The changes implemented in 2005 in the development strategies of Antarctic science carried out by Chile have had a positive impact on the scientific productivity of the Chilean Antarctic Science Program (PROCIEN). We analysed scientometric indicators from between 2009 and 2019. The bibliographic data were extracted from the Web of Science database using search query keywords. We used multiple correspondence analysis to identify specific trends and also network analyses of international collaboration in VOSviewer. The number of Antarctic science publications in Chile has gradually increased from 21 in 2009 to 95 in 2019. The rise in the number of articles was higher in journals for the first impact factor quartile. Research lines showing increased first-quartile impact factor papers corresponded to Antarctic ecosystems, biotechnology and geosciences. The main geographical domains in which such research activities have been carried out corresponded to in the South Shetland Islands and the Antarctic Peninsula. Fieldwork data are the main sources for the production of scientific articles, and there are three science platforms within which most of these papers concentrate. The diversification of funding sources, the implementation of improvements in the selection process and Chile's alignment with Scientific Committee on Antarctic Research programmes have contributed to improving the science that Chile has developed in Antarctica.","PeriodicalId":50972,"journal":{"name":"Antarctic Science","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47664750","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Time-lapse recording of yearly activity of the sea star Odontaster validus and the sea urchin Sterechinus neumayeri in Tethys Bay (Ross Sea, Antarctica) 南极罗斯海特提斯湾海星Odontaster validus和海胆Sterechinus neumayeri年度活动的延时记录
IF 1.6 4区 地球科学 Q2 Earth and Planetary Sciences Pub Date : 2023-02-01 DOI: 10.1017/S0954102022000529
A. Peirano, A. Bordone, L. Corgnati, S. Marini
Abstract One-year time-lapse images acquired via an autonomous photo imaging device positioned at a depth of 20 m in Tethys Bay (Ross Sea, Antarctica) on a rocky bottom colonized by the sponge Mycale (Oxymycale) acerata were analysed. Monthly changes in the abundance and activity of the sea star Odontaster validus and sea urchin Sterechinus neumayeri on the sponge and nearby rocky bottom were compared with respect to environmental variables such as pack-ice presence/absence, temperature, salinity and photosynthetically active radiation. Sea urchins were more abundant on the rocky bottom and sponge during the summer and winter, respectively. Sea stars showed a decrease in the number of individuals on the sponge from January to December. The grazing activity of both species reached its maximum in January–April, when increased sunlight contributed to the phytoplankton bloom. The winter months were critical both for O. validus and S. neumayeri; although the red sea star maintained its pattern of activity on the rocky bottoms in terms of searching for food, the sea urchin reduced its activity. Time-lapse monitoring systems coupled with physicochemical sensors showed potential for revealing species behaviour in polar environments, contributing to the elucidation of future changes in coastal communities facing climate change.
摘要对位于南极洲罗斯海特提斯湾(Tethys Bay)岩石底部、海绵Mycale (Oxymycale) acerata定居的20 m深度的自主照片成像设备拍摄的一年延时图像进行了分析。比较了海星Odontaster validus和海胆Sterechinus neumayeri在海绵和附近岩石底部的丰度和活动的月变化,包括浮冰存在/不存在、温度、盐度和光合有效辐射等环境变量。海胆在夏季和冬季分别在岩石底部和海绵上丰富。从1月到12月,海星在海绵上的个体数量有所减少。两种植物的放牧活动在1 - 4月达到最大值,此时阳光的增加有助于浮游植物的繁殖。冬季是白僵菌和诺氏僵菌的繁殖关键期;虽然红海星在岩石底部维持着寻找食物的活动模式,但海胆却减少了活动。与物理化学传感器相结合的延时监测系统显示出揭示极地环境中物种行为的潜力,有助于阐明面临气候变化的沿海社区的未来变化。
{"title":"Time-lapse recording of yearly activity of the sea star Odontaster validus and the sea urchin Sterechinus neumayeri in Tethys Bay (Ross Sea, Antarctica)","authors":"A. Peirano, A. Bordone, L. Corgnati, S. Marini","doi":"10.1017/S0954102022000529","DOIUrl":"https://doi.org/10.1017/S0954102022000529","url":null,"abstract":"Abstract One-year time-lapse images acquired via an autonomous photo imaging device positioned at a depth of 20 m in Tethys Bay (Ross Sea, Antarctica) on a rocky bottom colonized by the sponge Mycale (Oxymycale) acerata were analysed. Monthly changes in the abundance and activity of the sea star Odontaster validus and sea urchin Sterechinus neumayeri on the sponge and nearby rocky bottom were compared with respect to environmental variables such as pack-ice presence/absence, temperature, salinity and photosynthetically active radiation. Sea urchins were more abundant on the rocky bottom and sponge during the summer and winter, respectively. Sea stars showed a decrease in the number of individuals on the sponge from January to December. The grazing activity of both species reached its maximum in January–April, when increased sunlight contributed to the phytoplankton bloom. The winter months were critical both for O. validus and S. neumayeri; although the red sea star maintained its pattern of activity on the rocky bottoms in terms of searching for food, the sea urchin reduced its activity. Time-lapse monitoring systems coupled with physicochemical sensors showed potential for revealing species behaviour in polar environments, contributing to the elucidation of future changes in coastal communities facing climate change.","PeriodicalId":50972,"journal":{"name":"Antarctic Science","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43927915","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Microsatellite locus development in the seaweed Plocamium sp. Plocamium sp.海藻微卫星位点的发育。
IF 1.6 4区 地球科学 Q2 Earth and Planetary Sciences Pub Date : 2023-01-12 DOI: 10.1017/S0954102022000475
S. Heiser, C. Amsler, S. A. Krueger‐Hadfield
Macroalgae cover up to 80% of the benthos along the western Antarctic Peninsula (WAP; Wiencke & Amsler 2012). One of the most common and widespread members of the understory community is the red macroalga Plocamium sp. (Heiser et al. 2020). It supports among the highest amphipod and gastropod densities and is protected from predation through highly diverse chemical defences (Heiser et al. 2020). Haplotypic diversity, based on the mitochondrial cox1 barcode, showed some evidence of geographical structure as well as correlation with specific chemical defences (Shilling et al. 2021). These coarse patterns of genetic diversity are insufficient to understand the processes structuring populations of Plocamium sp. along the WAP, necessitating the use of more polymorphic, nuclear loci, such as microsatellites. Microsatellites have enabled the empirical quantification of the relative rates of selfing (i.e. self-fertilization) vs outcrossing (e.g. Winn et al. 2011) and sexual vs asexual reproduction (e.g. Vallejo-Marín et al. 2010), but studies have been restricted largely to angiosperms or animals, with far fewer investigations in macroalgae (KruegerHadfield et al. 2021). Plocamium sp., like many macroalgae, has a haploid-diploid life cycle, with free-living diploid tetrasporophytes and free-living haploid gametophytes, which are morphologically indistinguishable unless they are reproductive (Fig. S1; Heiser et al. 2020). Meiosis occurs on the tetrasporophytes, resulting in the release of haploid tetraspores. Tetraspores germinate and develop into male and female gametophytes. Gametes are mitotically produced by the gametophytes, but, following fertilization, the zygote is retained on the female gametophyte, where the carposporophyte develops. Each diploid carpospore can germinate into a tetrasporophyte. In natural populations, many thalli are vegetative, rendering it difficult to distinguish the stages. This life cycle results in unique eco-evolutionary consequences that challenge traditional understanding and the utility of common proxies to describe patterns of reproductive system variation (Krueger-Hadfield et al. 2021). For example, Plocamium sp. has separate sexes, but this does not preclude selfing (intergametophytic selfing; see Klekowski 1969). Separate sexes, therefore, cannot be used as a proxy to deduce outcrossing in natural populations. Instead, we must use population genetic tools to empirically quantify the relative rates of selfing, outcrossing and asexual reproduction in natural populations. We developed microsatellites to quantify patterns of genetic diversity and gene flow in Plocamium sp. (Heiser 2022). We chose microsatellites over other approaches for several reasons: 1) microsatellites facilitate the iterative addition of new samples to a dataset, something that is not possible in most genotyping by sequencing (GBS) approaches to identify single nucleotide polymorphisms; 2) microsatellites are an appropriate tool when existing data
大型藻类覆盖了南极半岛西部(WAP;Wiencke & Amsler 2012)。林下群落中最常见和最广泛的成员之一是红巨藻Plocamium sp. (Heiser et al. 2020)。它支持最高的片足类和腹足类密度,并通过高度多样化的化学防御免受捕食(Heiser et al. 2020)。基于线粒体cox1条形码的单倍型多样性显示了一些地理结构以及与特定化学防御相关的证据(Shilling et al. 2021)。这些粗糙的遗传多样性模式不足以理解Plocamium sp.沿着WAP的群体结构过程,需要使用更多的多态,核位点,如微卫星。微卫星已经能够对自交(即自受精)与异交(例如Winn等人,2011)以及有性生殖与无性生殖(例如Vallejo-Marín等人,2010)的相对比率进行实证量化,但研究主要局限于被子植物或动物,对大型藻类的研究要少得多(KruegerHadfield等人,2021)。像许多大型藻类一样,Plocamium sp.具有单倍体-二倍体的生命周期,具有自由生活的二倍体四孢子体和自由生活的单倍体配子体,除非它们是生殖的,否则在形态上难以区分(图S1;Heiser et al. 2020)。减数分裂发生在四孢子植物上,导致单倍体四孢子的释放。四孢子萌发并发育成雄性和雌性配子体。配子由配子体进行有丝分裂产生,但受精后,合子保留在雌性配子体上,在那里形成车孢子体。每个二倍体碳孢子都能萌发成四孢子体。在自然种群中,许多菌体是营养性的,因此很难区分各个阶段。这一生命周期导致了独特的生态进化后果,挑战了传统的理解和常用代理来描述生殖系统变异模式的效用(Krueger-Hadfield et al. 2021)。例如,Plocamium sp.有独立的性别,但这并不妨碍自交(配子体间自交;参见Klekowski 1969)。因此,性别分离不能作为推断自然种群异交的依据。相反,我们必须使用种群遗传工具,以经验量化自然种群中自交、异交和无性繁殖的相对比率。我们开发了微型卫星来量化Plocamium sp.的遗传多样性和基因流动模式(Heiser 2022)。我们选择微卫星而不是其他方法有以下几个原因:1)微卫星有助于向数据集迭代添加新样本,这在大多数通过测序(GBS)方法识别单核苷酸多态性的基因分型中是不可能的;2)当缺乏关于倍性和生殖系统的现有数据时,微卫星是一个合适的工具,这可能会使GBS方法的下游生物信息学复杂化;3)微卫星是量化大型藻类繁殖模式变化的有力工具(Krueger-Hadfield et al. 2021)。我们于2016年至2018年夏季在安弗斯岛帕尔默站附近的'East Litchfield'和Laggard岛收集了Plocamium sp.菌体(详见补充材料)。所有配子体都有一个等位基因,所有四孢子体都有一个或两个等位基因,证实了我们的10个多态性微卫星位点是单位点遗传决定论(表S1)。单倍体配子体中未扩增的零等位基因频率的直接估计值(< 5%)与二倍体四孢子体中最大似然估计值之间存在差异(0-39%;表S2)。当种群不随机交配时,这是二倍体中零等位基因频率估计值的假设,在其他单倍体-二倍体大型藻类中发现了直接和最大似然估计值之间的差异(例如Krueger-Hadfield et al. 2013)。由于也没有短等位基因显性的证据(表S3),这10个位点有望用于未来的群体遗传分析。南极科学35(1),43-45(2023)©The Author(s), 2023。剑桥大学出版社,南极科学有限公司出版。这是一篇开放获取的文章,在知识共享署名许可(http:// creativecommons.org/licenses/by/4.0/)的条款下分发,该许可允许不受限制的重复使用、分发和复制,前提是原始文章被适当引用。doi: 10.1017 / S0954102022000475
{"title":"Microsatellite locus development in the seaweed Plocamium sp.","authors":"S. Heiser, C. Amsler, S. A. Krueger‐Hadfield","doi":"10.1017/S0954102022000475","DOIUrl":"https://doi.org/10.1017/S0954102022000475","url":null,"abstract":"Macroalgae cover up to 80% of the benthos along the western Antarctic Peninsula (WAP; Wiencke & Amsler 2012). One of the most common and widespread members of the understory community is the red macroalga Plocamium sp. (Heiser et al. 2020). It supports among the highest amphipod and gastropod densities and is protected from predation through highly diverse chemical defences (Heiser et al. 2020). Haplotypic diversity, based on the mitochondrial cox1 barcode, showed some evidence of geographical structure as well as correlation with specific chemical defences (Shilling et al. 2021). These coarse patterns of genetic diversity are insufficient to understand the processes structuring populations of Plocamium sp. along the WAP, necessitating the use of more polymorphic, nuclear loci, such as microsatellites. Microsatellites have enabled the empirical quantification of the relative rates of selfing (i.e. self-fertilization) vs outcrossing (e.g. Winn et al. 2011) and sexual vs asexual reproduction (e.g. Vallejo-Marín et al. 2010), but studies have been restricted largely to angiosperms or animals, with far fewer investigations in macroalgae (KruegerHadfield et al. 2021). Plocamium sp., like many macroalgae, has a haploid-diploid life cycle, with free-living diploid tetrasporophytes and free-living haploid gametophytes, which are morphologically indistinguishable unless they are reproductive (Fig. S1; Heiser et al. 2020). Meiosis occurs on the tetrasporophytes, resulting in the release of haploid tetraspores. Tetraspores germinate and develop into male and female gametophytes. Gametes are mitotically produced by the gametophytes, but, following fertilization, the zygote is retained on the female gametophyte, where the carposporophyte develops. Each diploid carpospore can germinate into a tetrasporophyte. In natural populations, many thalli are vegetative, rendering it difficult to distinguish the stages. This life cycle results in unique eco-evolutionary consequences that challenge traditional understanding and the utility of common proxies to describe patterns of reproductive system variation (Krueger-Hadfield et al. 2021). For example, Plocamium sp. has separate sexes, but this does not preclude selfing (intergametophytic selfing; see Klekowski 1969). Separate sexes, therefore, cannot be used as a proxy to deduce outcrossing in natural populations. Instead, we must use population genetic tools to empirically quantify the relative rates of selfing, outcrossing and asexual reproduction in natural populations. We developed microsatellites to quantify patterns of genetic diversity and gene flow in Plocamium sp. (Heiser 2022). We chose microsatellites over other approaches for several reasons: 1) microsatellites facilitate the iterative addition of new samples to a dataset, something that is not possible in most genotyping by sequencing (GBS) approaches to identify single nucleotide polymorphisms; 2) microsatellites are an appropriate tool when existing data","PeriodicalId":50972,"journal":{"name":"Antarctic Science","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-01-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43499914","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
期刊
Antarctic Science
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1