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Distinct contributions of meprins to skin regeneration after injury – Meprin α a physiological processer of pro-collagen VII Meprin对损伤后皮肤再生的独特贡献- Meprin α是前胶原VII的生理处理者
Q1 Medicine Pub Date : 2021-08-01 DOI: 10.1016/j.mbplus.2021.100065
Daniel Kruppa , Florian Peters , Olivier Bornert , Mareike D. Maler , Stefan F. Martin , Christoph Becker-Pauly , Alexander Nyström

Astacin-like proteinases (ALPs) are regulators of tissue and extracellular matrix (ECM) homeostasis. They convey this property through their ability to convert ECM protein pro-forms to functional mature proteins and by regulating the bioavailability of growth factors that stimulate ECM synthesis. The most studied ALPs in this context are the BMP-1/tolloid-like proteinases. The other subclass of ALPs in vertebrates – the meprins, comprised of meprin α and meprin β – are emerging as regulators of tissue and ECM homeostasis but have so far been only limitedly investigated. Here, we functionally assessed the roles of meprins in skin wound healing using mice genetically deficient in one or both meprins. Meprin deficiency did not change the course of macroscopic wound closure. However, subtle but distinct contributions of meprins to the healing process and dermal homeostasis were observed. Loss of both meprins delayed re-epithelialization and reduced macrophage infiltration. Abnormal dermal healing and ECM regeneration was observed in meprin deficient wounds. Our analyses also revealed meprin α as one proteinase responsible for maturation of pro-collagen VII to anchoring fibril-forming-competent collagen VII in vivo. Collectively, our study identifies meprins as subtle players in skin wound healing.

astacin样蛋白酶(ALPs)是组织和细胞外基质(ECM)稳态的调节因子。它们通过将ECM蛋白前形态转化为功能性成熟蛋白的能力以及调节刺激ECM合成的生长因子的生物利用度来传递这种特性。在这方面研究最多的是BMP-1/脂质样蛋白酶。在脊椎动物中,meprins的另一个亚类——由meprin α和meprin β组成的meprins——正在成为组织和ECM稳态的调节因子,但迄今为止只进行了有限的研究。在这里,我们使用一种或两种meprins基因缺陷的小鼠,从功能上评估了meprins在皮肤伤口愈合中的作用。美普兰缺乏对肉眼创面愈合过程无影响。然而,观察到meprins对愈合过程和皮肤稳态的微妙但独特的贡献。两种meprins的丢失延迟了再上皮化和巨噬细胞浸润的减少。在meprin缺失的创面中观察到异常的皮肤愈合和ECM再生。我们的分析还显示,meprin α是一种蛋白酶,负责在体内将前胶原VII成熟为锚定具有纤维形成能力的胶原VII。总的来说,我们的研究确定了meprins在皮肤伤口愈合中的微妙作用。
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引用次数: 10
Small leucine-rich proteoglycans in physiological and biomechanical function of bone 富含亮氨酸的小蛋白聚糖在骨的生理和生物力学功能中的作用
Q1 Medicine Pub Date : 2021-08-01 DOI: 10.1016/j.mbplus.2021.100063
Rui Hua, Jean X. Jiang

Proteoglycans (PGs) contain long unbranched glycosaminoglycan (GAG) chains attached to core proteins. In the bone extracellular matrix, PGs represent a class of non-collagenous proteins, and have high affinity to minerals and collagen. Considering the highly negatively charged character of GAGs and their interfibrillar positioning interconnecting with collagen fibrils, PGs and GAGs play pivotal roles in maintaining hydrostatic and osmotic pressure in the matrix. In this review, we will discuss the role of PGs, especially the small leucine-rich proteoglycans, in regulating the bioactivity of multiple cytokines and growth factors, and the bone turnover process. In addition, we focus on the coupling effects of PGs and GAGs in the hydration status of bone extracellular matrix, thus modulating bone biomechanical properties under physiological and pathological conditions.

蛋白聚糖(pg)是一种附着在核心蛋白上的长链无支链糖胺聚糖(GAG)。在骨细胞外基质中,pg代表了一类非胶原蛋白,对矿物质和胶原蛋白具有很高的亲和力。考虑到GAGs的高负电荷特性及其与胶原原纤维相互连接的纤维间定位,pg和GAGs在维持基质中的静水压力和渗透压方面起着关键作用。在这篇综述中,我们将讨论pg,特别是富含亮氨酸的小蛋白聚糖,在调节多种细胞因子和生长因子的生物活性以及骨转换过程中的作用。此外,我们还重点研究了pg和GAGs在骨细胞外基质水化状态中的偶联作用,从而在生理和病理条件下调节骨的生物力学特性。
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引用次数: 8
The Yin and Yang of extracellular matrix 细胞外基质的阴阳。
Q1 Medicine Pub Date : 2021-08-01 DOI: 10.1016/j.mbplus.2021.100075
Maurizio Mongiat , Alexander Nyström
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引用次数: 1
The critical role of collagen VI in lung development and chronic lung disease 胶原VI在肺部发育和慢性肺部疾病中的关键作用
Q1 Medicine Pub Date : 2021-06-01 DOI: 10.1016/j.mbplus.2021.100058
Jared A. Mereness, Thomas J. Mariani

Type VI collagen (collagen VI) is an obligate extracellular matrix component found mainly in the basement membrane region of many mammalian tissues and organs, including skeletal muscle and throughout the respiratory system. Collagen VI is probably most recognized in medicine as the genetic cause of a spectrum of muscular dystrophies, including Ullrich Congenital Myopathy and Bethlem Myopathy. Collagen VI is thought to contribute to myopathy, at least in part, by mediating muscle fiber integrity by anchoring myoblasts to the muscle basement membrane. Interestingly, collagen VI myopathies present with restrictive respiratory insufficiency, thought to be due primarily to thoracic muscular weakening. Although it was recently recognized as one of the (if not the) most abundant collagens in the mammalian lung, there is a substantive knowledge gap concerning its role in respiratory system development and function. A few studies have suggested that collagen VI insufficiency is associated with airway epithelial cell survival and altered lung function. Our recent work suggested collagen VI may be a genomic risk factor for chronic lung disease in premature infants. Using this as motivation, we thoroughly assessed the role of collagen VI in lung development and in lung epithelial cell biology. Here, we describe the state-of-the-art for collagen VI cell and developmental biology within the respiratory system, and reveal its essential roles in normal developmental processes and airway epithelial cell phenotype and intracellular signaling.

VI型胶原(胶原VI)是一种专性细胞外基质成分,主要存在于许多哺乳动物组织和器官的基底膜区域,包括骨骼肌和整个呼吸系统。在医学上,VI型胶原蛋白可能是一系列肌肉营养不良症的遗传原因,包括乌尔里希先天性肌病和伯利恒肌病。VI型胶原被认为至少在一定程度上是通过将成肌细胞锚定在肌基底膜上介导肌纤维完整性而导致肌病的。有趣的是,胶原VI型肌病表现为限制性呼吸功能不全,被认为主要是由于胸肌衰弱。虽然它最近被认为是哺乳动物肺中最丰富的胶原之一(如果不是),但它在呼吸系统发育和功能中的作用仍然存在实质性的知识差距。一些研究表明,胶原VI不足与气道上皮细胞存活和肺功能改变有关。我们最近的研究表明,胶原VI可能是早产儿慢性肺病的一个基因组危险因素。以此为动机,我们全面评估了胶原VI在肺发育和肺上皮细胞生物学中的作用。在这里,我们描述了呼吸系统内胶原VI细胞和发育生物学的最新进展,并揭示了其在正常发育过程、气道上皮细胞表型和细胞内信号传导中的重要作用。
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引用次数: 14
A new mouse mutant with cleavage-resistant versican and isoform-specific versican mutants demonstrate that proteolysis at the Glu441-Ala442 peptide bond in the V1 isoform is essential for interdigital web regression 一种新的小鼠突变体,具有抗剪切和异构体特异性的异构体突变体,表明V1异构体中Glu441-Ala442肽键的蛋白质水解对数字间网络回归至关重要
Q1 Medicine Pub Date : 2021-06-01 DOI: 10.1016/j.mbplus.2021.100064
Sumeda Nandadasa , Cyril Burin des Roziers , Christopher Koch , Karin Tran-Lundmark , María T. Dours-Zimmermann , Dieter R. Zimmermann , Sophie Valleix , Suneel S. Apte

Two inherent challenges in the mechanistic interpretation of protease-deficient phenotypes are defining the specific substrate cleavages whose reduction generates the phenotypes and determining whether the phenotypes result from loss of substrate function, substrate accumulation, or loss of a function(s) embodied in the substrate fragments. Hence, recapitulation of a protease-deficient phenotype by a cleavage-resistant substrate would stringently validate the importance of a proteolytic event and clarify the underlying mechanisms. Versican is a large proteoglycan required for development of the circulatory system and proper limb development, and is cleaved by ADAMTS proteases at the Glu441-Ala442 peptide bond located in its alternatively spliced GAGβ domain. Specific ADAMTS protease mutants have impaired interdigit web regression leading to soft tissue syndactyly that is associated with reduced versican proteolysis. Versikine, the N-terminal proteolytic fragment generated by this cleavage, restores interdigit apoptosis in ADAMTS mutant webs. Here, we report a new mouse transgene, VcanAA, with validated mutations in the GAGβ domain that specifically abolish this proteolytic event. VcanAA/AA mice have partially penetrant hindlimb soft tissue syndactyly. However, Adamts20 inactivation in VcanAA/AA mice leads to fully penetrant, more severe syndactyly affecting all limbs, suggesting that ADAMTS20 cleavage of versican at other sites or of other substrates is an additional requirement for web regression. Indeed, immunostaining with a neoepitope antibody against a cleavage site in the versican GAGα domain demonstrated reduced staining in the absence of ADAMTS20. Significantly, mice with deletion of Vcan exon 8, encoding the GAGβ domain, consistently developed soft tissue syndactyly, whereas mice unable to include exon 7, encoding the GAGα domain in Vcan transcripts, consistently had fully separated digits. These findings suggest that versican is cleaved within each GAG-bearing domain during web regression, and affirms that proteolysis in the GAGβ domain, via generation of versikine, has an essential role in interdigital web regression.

在蛋白酶缺陷表型的机制解释中,两个固有的挑战是定义特定的底物裂解,其减少产生表型,以及确定表型是由底物功能丧失、底物积累还是底物片段中体现的功能丧失引起的。因此,通过抗切割底物再现蛋白酶缺陷表型将严格验证蛋白水解事件的重要性,并阐明其潜在机制。Versican是循环系统发育和肢体发育所必需的一种大型蛋白多糖,它被ADAMTS蛋白酶在位于其可选剪接的GAGβ结构域的Glu441-Ala442肽键上切割。特异性的ADAMTS蛋白酶突变体破坏了指间蹼的退化,导致软组织并指,这与减少的versican蛋白水解有关。由这种裂解产生的n端蛋白水解片段version - ine可恢复ADAMTS突变体网中趾间细胞凋亡。在这里,我们报道了一种新的小鼠转基因VcanAA,它在GAGβ结构域具有有效的突变,可以特异性地消除这种蛋白水解事件。VcanAA/AA小鼠后肢软组织部分侵透并趾。然而,在VcanAA/AA小鼠中,Adamts20失活导致完全渗透,更严重的并指影响所有肢体,这表明Adamts20在其他位点或其他底物上切割versican是网络回归的额外要求。事实上,在没有ADAMTS20的情况下,针对versican GAGα结构域切割位点的新表位抗体免疫染色显示染色减少。值得注意的是,编码GAGβ结构域的Vcan外显子8缺失的小鼠,始终具有软组织并指发育,而无法包含编码GAGα结构域的Vcan外显子7的小鼠,始终具有完全分离的趾。这些发现表明,在网状回归过程中,每个含gag的结构域内的侧链蛋白都被切割,并证实了通过侧链蛋白的产生,在ga β结构域的蛋白质水解在数字间网状回归中起着重要作用。
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引用次数: 12
The Nrf2 transcription factor: A multifaceted regulator of the extracellular matrix Nrf2转录因子:细胞外基质的多方面调节因子
Q1 Medicine Pub Date : 2021-06-01 DOI: 10.1016/j.mbplus.2021.100057
Paul Hiebert

The transcription factor nuclear factor-erythroid 2-related factor 2 (Nrf2) is widely recognized as a master regulator of the cellular stress response by facilitating the transcription of cytoprotective genes. As such, the Nrf2 pathway is critical in guarding the cell from the harmful effects of excessive reactive oxygen species/reactive nitrogen species (ROS/RNS) and in maintaining cellular redox balance. While excessive ROS/RNS are harmful to the cell, physiological levels of ROS/RNS play important roles in regulating numerous signaling pathways important for normal cellular function, including the synthesis of extracellular matrix (ECM). Recent advances have underscored the importance of ROS/RNS, and by extension, factors that influence redox-balance such as Nrf2, in regulating ECM production and deposition. In addition to reducing the oxidative burden in the cell, the discovery that Nrf2 can also directly target genes that regulate and form the ECM has cemented it as a multifaceted player in the regulation of ECM proteins, and provides new insight into its potential usefulness as a target for treating ECM-related pathologies.

转录因子核因子-红细胞2相关因子2 (nuclear factor-erythroid 2-related factor 2, Nrf2)通过促进细胞保护基因的转录,被广泛认为是细胞应激反应的主要调控因子。因此,Nrf2通路在保护细胞免受过多活性氧/活性氮(ROS/RNS)的有害影响和维持细胞氧化还原平衡方面至关重要。虽然过量的ROS/RNS对细胞有害,但生理水平的ROS/RNS在调节许多对正常细胞功能重要的信号通路中发挥重要作用,包括细胞外基质(ECM)的合成。最近的进展强调了ROS/RNS的重要性,并进一步强调了影响氧化还原平衡的因素,如Nrf2,在调节ECM的产生和沉积中的重要性。除了减少细胞中的氧化负担外,Nrf2还可以直接靶向调节和形成ECM的基因,这一发现巩固了它在ECM蛋白调控中的多方面作用,并为其作为治疗ECM相关病理的靶点的潜在用途提供了新的见解。
{"title":"The Nrf2 transcription factor: A multifaceted regulator of the extracellular matrix","authors":"Paul Hiebert","doi":"10.1016/j.mbplus.2021.100057","DOIUrl":"10.1016/j.mbplus.2021.100057","url":null,"abstract":"<div><p>The transcription factor nuclear factor-erythroid 2-related factor 2 (Nrf2) is widely recognized as a master regulator of the cellular stress response by facilitating the transcription of cytoprotective genes. As such, the Nrf2 pathway is critical in guarding the cell from the harmful effects of excessive reactive oxygen species/reactive nitrogen species (ROS/RNS) and in maintaining cellular redox balance. While excessive ROS/RNS are harmful to the cell, physiological levels of ROS/RNS play important roles in regulating numerous signaling pathways important for normal cellular function, including the synthesis of extracellular matrix (ECM). Recent advances have underscored the importance of ROS/RNS, and by extension, factors that influence redox-balance such as Nrf2, in regulating ECM production and deposition. In addition to reducing the oxidative burden in the cell, the discovery that Nrf2 can also directly target genes that regulate and form the ECM has cemented it as a multifaceted player in the regulation of ECM proteins, and provides new insight into its potential usefulness as a target for treating ECM-related pathologies.</p></div>","PeriodicalId":52317,"journal":{"name":"Matrix Biology Plus","volume":"10 ","pages":"Article 100057"},"PeriodicalIF":0.0,"publicationDate":"2021-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.mbplus.2021.100057","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39058762","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 18
In-depth correlation analysis demonstrates that 4-hydroxyproline at the Yaa position of Gly-Xaa-Yaa repeats dominantly stabilizes collagen triple helix 深入相关分析表明,Gly-Xaa-Yaa重复序列Yaa位置的4-羟基脯氨酸对胶原三螺旋的稳定起主导作用
Q1 Medicine Pub Date : 2021-06-01 DOI: 10.1016/j.mbplus.2021.100067
Yuki Taga, Keisuke Tanaka, Shunji Hattori, Kazunori Mizuno

There is a general consensus that collagen stability is largely maintained by Pro and its major hydroxylated form, 4-hydroxyproline (4Hyp). However, positional difference in their stabilizing effect at the Xaa or Yaa position of collagenous Gly-Xaa-Yaa sequences has remained inconclusive. Here, we position-specifically evaluated the correlation of imino acid contents to denaturation temperature (Td) of collagen among various vertebrate and invertebrate species, using a recently developed LC–MS methodology. 4Hyp at the Yaa position showed the highest positive correlation with Td, followed by Pro at the Xaa position, which was even further increased by excluding invertebrates. We confirmed that Gly-Pro-4Hyp liberated after bacterial collagenase digestion was highly positively correlated with Td. Furthermore, other tripeptides with Yaa position 4Hyp also had comparable positive correlation, excepting negative correlation of Gly-Gly-4Hyp, while tripeptides with Xaa position Pro did not. These data provide evidence that 4Hyp dominantly contributes to thermal stability of collagen depending on its sequence position, especially in vertebrates.

人们普遍认为,Pro及其主要羟基化形式4-羟基脯氨酸(4Hyp)在很大程度上维持了胶原蛋白的稳定性。然而,它们在胶原Gly-Xaa-Yaa序列的Xaa或Yaa位置的稳定作用的位置差异仍然没有定论。在这里,我们使用最近开发的LC-MS方法,专门评估了不同脊椎动物和无脊椎动物物种中亚胺酸含量与胶原变性温度(Td)的相关性。Yaa位置的hyp与Td的正相关最高,其次是Xaa位置的Pro,排除无脊椎动物后,其正相关进一步增加。我们证实细菌胶原酶消化后释放的Gly-Pro-4Hyp与Td呈高度正相关。此外,除Gly-Gly-4Hyp为负相关外,其他与Yaa位置4Hyp的三肽也具有相当的正相关,而与Xaa位置Pro的三肽则没有相关。这些数据提供了证据,证明4Hyp对胶原热稳定性的贡献主要取决于其序列位置,特别是在脊椎动物中。
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引用次数: 9
Mechano-chemo signaling interactions modulate matrix production by cardiac fibroblasts 机械-化学信号相互作用调节心肌成纤维细胞的基质生成
Q1 Medicine Pub Date : 2021-06-01 DOI: 10.1016/j.mbplus.2020.100055
Jesse D. Rogers , Jeffrey W. Holmes , Jeffrey J. Saucerman , William J. Richardson

Extracellular matrix remodeling after myocardial infarction occurs in a dynamic environment in which local mechanical stresses and biochemical signaling species stimulate the accumulation of collagen-rich scar tissue. It is well-known that cardiac fibroblasts regulate post-infarction matrix turnover by secreting matrix proteins, proteases, and protease inhibitors in response to both biochemical stimuli and mechanical stretch, but how these stimuli act together to dictate cellular responses is still unclear. We developed a screen of cardiac fibroblast-secreted proteins in response to combinations of biochemical agonists and cyclic uniaxial stretch in order to elucidate the relationships between stretch, biochemical signaling, and cardiac matrix turnover. We found that stretch significantly synergized with biochemical agonists to inhibit the secretion of matrix metalloproteinases, with stretch either amplifying protease suppression by individual agonists or antagonizing agonist-driven upregulation of protease expression. Stretch also modulated fibroblast sensitivity towards biochemical agonists by either sensitizing cells towards agonists that suppress protease secretion or de-sensitizing cells towards agonists that upregulate protease secretion. These findings suggest that the mechanical environment can significantly alter fibrosis-related signaling in cardiac fibroblasts, suggesting caution when extrapolating in vitro data to predict effects of fibrosis-related cytokines in situations like myocardial infarction where mechanical stretch occurs.

心肌梗死后的细胞外基质重构发生在动态环境中,局部机械应力和生化信号物质刺激了富含胶原的瘢痕组织的积累。众所周知,心肌成纤维细胞在生化刺激和机械拉伸的作用下通过分泌基质蛋白、蛋白酶和蛋白酶抑制剂来调节梗死后基质的周转,但这些刺激如何共同作用来决定细胞反应尚不清楚。为了阐明拉伸、生化信号和心脏基质转换之间的关系,我们开发了一种针对生化激动剂和循环单轴拉伸组合的心脏成纤维细胞分泌蛋白的筛选方法。我们发现,拉伸与生化激动剂显著协同抑制基质金属蛋白酶的分泌,拉伸可以放大单个激动剂对蛋白酶的抑制,也可以拮抗激动剂驱动的蛋白酶表达上调。拉伸还通过使细胞对抑制蛋白酶分泌的激动剂增敏或使细胞对上调蛋白酶分泌的激动剂去敏来调节成纤维细胞对生化激动剂的敏感性。这些发现表明,机械环境可以显著改变心脏成纤维细胞中的纤维化相关信号,提示在推断体外数据以预测心肌梗死等发生机械拉伸的情况下纤维化相关细胞因子的影响时要谨慎。
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引用次数: 10
Extracellular matrix remodeling associated with bleomycin-induced lung injury supports pericyte-to-myofibroblast transition 与博莱霉素诱导的肺损伤相关的细胞外基质重塑支持周细胞向肌成纤维细胞的转变
Q1 Medicine Pub Date : 2021-06-01 DOI: 10.1016/j.mbplus.2020.100056
Riley T. Hannan , Andrew E. Miller , Ruei-Chun Hung , Catherine Sano , Shayn M. Peirce , Thomas H. Barker

Of the many origins of pulmonary myofibroblasts, microvascular pericytes are a known source. Prior literature has established the ability of pericytes to transition into myofibroblasts, but provide limited insight into molecular cues that drive this process during lung injury repair and fibrosis. Fibronectin and RGD-binding integrins have long been considered pro-fibrotic factors in myofibroblast biology, and here we test the hypothesis that these known myofibroblast cues coordinate pericyte-to-myofibroblast transitions. Specifically, we hypothesized that αvβ3 integrin engagement on fibronectin induces pericyte transition into myofibroblastic phenotypes in the murine bleomycin lung injury model. Myosin Heavy Chain 11 (Myh11)-CreERT2 lineage tracing in transgenic mice allows identification of cells of pericyte origin and provides a robust tool for isolating pericytes from tissues for further evaluation. We used this murine model to track and characterize pericyte behaviors during tissue repair. The majority of Myh11 lineage-positive cells are positive for the pericyte surface markers, PDGFRβ (55%) and CD146 (69%), and display typical pericyte morphology with spatial apposition to microvascular networks. After intratracheal bleomycin treatment of mice, Myh11 lineage-positive cells showed significantly increased contractile and secretory markers, as well as αv integrin expression. According to RNASeq measurements, many disease and tissue-remodeling genesets were upregulated in Myh11 lineage-positive cells in response to bleomycin-induced lung injury. In vitro, blocking αvβ3 binding through cycloRGDfK prevented expression of the myofibroblastic marker αSMA relative to controls. In response to RGD-containing provisional matrix proteins present in lung injury, pericytes may alter their integrin profile.

在肺肌成纤维细胞的许多来源中,微血管周细胞是一个已知的来源。先前的文献已经证实了周细胞向肌成纤维细胞转变的能力,但对肺损伤修复和纤维化过程中驱动这一过程的分子线索的了解有限。纤维连接蛋白和rgd结合整合素长期以来被认为是肌成纤维细胞生物学中的促纤维化因子,在这里,我们验证了这些已知的肌成纤维细胞线索协调周细胞向肌成纤维细胞转变的假设。具体来说,我们假设αvβ3整合素与纤维连接蛋白的结合诱导了小鼠博来霉素肺损伤模型的周细胞向肌成纤维细胞表型的转变。在转基因小鼠中追踪肌球蛋白重链11 (Myh11)-CreERT2谱系可以鉴定周细胞来源的细胞,并为从组织中分离周细胞进行进一步评估提供了一个强大的工具。我们使用这种小鼠模型来跟踪和表征组织修复过程中周细胞的行为。大多数Myh11谱系阳性细胞对周细胞表面标记物PDGFRβ(55%)和CD146(69%)呈阳性,并表现出典型的周细胞形态,与微血管网络空间相关。经气管内博来霉素处理小鼠后,Myh11谱系阳性细胞的收缩和分泌标记物以及αv整合素的表达显著增加。根据RNASeq测量,许多疾病和组织重塑基因在Myh11谱系阳性细胞中上调,以响应博莱霉素诱导的肺损伤。体外,与对照组相比,通过cycloRGDfK阻断αvβ3结合可阻止肌成纤维细胞标志物αSMA的表达。作为对肺损伤中含有rgd的临时基质蛋白的反应,周细胞可能改变其整合素谱。
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引用次数: 12
Extracellular matrix gene expression signatures as cell type and cell state identifiers 细胞外基质基因表达特征作为细胞类型和细胞状态标识符
Q1 Medicine Pub Date : 2021-06-01 DOI: 10.1016/j.mbplus.2021.100069
Fabio Sacher , Christian Feregrino , Patrick Tschopp , Collin Y. Ewald

Transcriptomic signatures based on cellular mRNA expression profiles can be used to categorize cell types and states. Yet whether different functional groups of genes perform better or worse in this process remains largely unexplored. Here we test the core matrisome – that is, all genes coding for structural proteins of the extracellular matrix – for its ability to delineate distinct cell types in embryonic single-cell RNA-sequencing (scRNA-seq) data. We show that even though expressed core matrisome genes correspond to less than 2% of an entire cellular transcriptome, their RNA expression levels suffice to recapitulate essential aspects of cell type-specific clustering. Notably, using scRNA-seq data from the embryonic limb, we demonstrate that core matrisome gene expression outperforms random gene subsets of similar sizes and can match and exceed the predictive power of transcription factors. While transcription factor signatures generally perform better in predicting cell types at early stages of chicken and mouse limb development, i.e., when cells are less differentiated, the information content of the core matrisome signature increases in more differentiated cells. Moreover, using cross-species analyses, we show that these cell type-specific signatures are evolutionarily conserved. Our findings suggest that each cell type produces its own unique extracellular matrix, or matreotype, which becomes progressively more refined and cell type-specific as embryonic tissues mature.

基于细胞mRNA表达谱的转录组特征可用于对细胞类型和状态进行分类。然而,在这个过程中,不同功能组的基因表现得更好或更差,在很大程度上仍未被探索。在这里,我们测试了核心基质-即所有编码细胞外基质结构蛋白的基因-在胚胎单细胞rna测序(scRNA-seq)数据中描述不同细胞类型的能力。我们发现,尽管表达的核心基质基因只占整个细胞转录组的不到2%,但它们的RNA表达水平足以概括细胞类型特异性聚类的基本方面。值得注意的是,利用胚胎肢体的scRNA-seq数据,我们证明了核心基质基因表达优于相似大小的随机基因亚群,并且可以匹配甚至超过转录因子的预测能力。虽然转录因子信号通常在鸡和小鼠肢体发育的早期阶段能更好地预测细胞类型,即当细胞分化程度较低时,核心基质体信号的信息含量在分化程度较高的细胞中增加。此外,通过跨物种分析,我们发现这些细胞类型特异性特征在进化上是保守的。我们的研究结果表明,每种细胞类型都会产生自己独特的细胞外基质或基质型,随着胚胎组织的成熟,这种基质会逐渐变得更加精细和细胞类型特异性。
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引用次数: 10
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