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DNA methylation at individual CpG-sites of EPB41L3, HTERT and FAM19A4 are useful for detection of cervical high-grade squamous intraepithelial lesions (HSIL) or worse: Analysis of individual CpG-sites outperforms averaging EPB41L3、HTERT和FAM19A4的单个CpG位点的DNA甲基化有助于检测宫颈高级别鳞状上皮内病变(HSIL)或更严重的病变:对单个 CpG 位点的分析优于平均分析。
IF 4.7 Q1 VIROLOGY Pub Date : 2024-07-01 DOI: 10.1016/j.tvr.2024.200288
Monica Molano , Dorothy A. Machalek , Samuel Phillips , Grace Tan , Suzanne M. Garland , David Hawkes , Prisha Balgovind , Reza Haqshenas , Steve G. Badman , John Bolnga , Josephine Gabuzzi , Zure Kombati , Gloria M. Munnull , Julia ML. Brotherton , Marion Saville , John M. Kaldor , Pamela J. Toliman , Andrew J. Vallely , Gerald L. Murray

Global methylation analysis of gene promoters is promising for detection of high-grade squamous intraepithelial lesions or worse (HSIL+) in high-risk human papillomavirus (hrHPV)-positive women. However, diagnostic performance of methylation data at individual CpG-sites is limited. We explored methylation for predicting HSIL+ in self- and clinician-collected samples from Papua New Guinea.

Methylation of EPB41L3 (1–6 CpG-sites), hTERT (1–10 CpG-sites) and FAM19A4 (1–5 CpG-sites) was assessed through pyrosequencing from 44 HPV+ samples (4 cancers, 19 HSIL, 4 low-grade squamous intraepithelial lesions (LSIL), 17 normal). New primers were designed for FAM19A4 directed to the first exon region not explored previously.

In clinician-collected samples, methylation at CpG-sites 4 and 5 of EPB41L3 were the best HSIL predictors (AUC >0.83) and CpG-site 4 for cancer (0.925). Combination of EPB41L3 sites 2/4 plus FAM19A4 site 1 were the best HSIL+ markers [100% sensitivity, 63.2% specificity].

Methylation at CpG-site 5 of FAM19A4 was the best HSIL predictor (0.67) in self-collected samples, and CpG-sites 1 and 3 of FAM19A4 for cancer (0.77). Combined, FAM19A4 site 1 plus HPV 16/18 detection yielded sensitivity of 82.6% and specificity of 61.9%.

In conclusion, methylation at individual CpG-sites of EPB41L3 and FAM19A4 outperformed global analysis and improved HSIL+ detection, warranting further investigation.

基因启动子的全局甲基化分析有望用于检测高危人类乳头瘤病毒(hrHPV)阳性妇女的高级别或更严重的鳞状上皮内病变(HSIL+)。然而,单个 CpG 位点甲基化数据的诊断性能有限。我们对巴布亚新几内亚自采样本和临床医生采集样本中预测 HSIL+ 的甲基化情况进行了研究。通过对 44 份 HPV+样本(4 例癌症、19 例 HSIL、4 例低度鳞状上皮内病变 (LSIL)、17 例正常样本)进行热测序,评估了 EPB41L3(1-6 个 CpG 位点)、hTERT(1-10 个 CpG 位点)和 FAM19A4(1-5 个 CpG 位点)的甲基化情况。针对 FAM19A4 设计了新的引物,引物指向以前未探究过的第一个外显子区域。在临床医生采集的样本中,EPB41L3的CpG位点4和5的甲基化是预测HSIL的最佳指标(AUC>0.83),CpG位点4是预测癌症的最佳指标(0.925)。EPB41L3 2/4位点和FAM19A4 1位点的组合是最佳的HSIL+标记物[敏感性100%,特异性63.2%]。在自采样本中,FAM19A4 的 CpG 位点 5 的甲基化是预测 HSIL 的最佳指标(0.67),而 FAM19A4 的 CpG 位点 1 和 3 则是预测癌症的最佳指标(0.77)。结合 FAM19A4 位点 1 和 HPV 16/18 检测,灵敏度为 82.6%,特异性为 61.9%。总之,EPB41L3 和 FAM19A4 单个 CpG 位点的甲基化优于全局分析,提高了 HSIL+ 的检测率,值得进一步研究。
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引用次数: 0
HPV16 genome structure analysis in oropharyngeal cancer PDXs identifies tumors with integrated and episomal genomes 口咽癌 PDX 中的 HPV16 基因组结构分析确定了具有整合基因组和外显子基因组的肿瘤。
IF 4.7 Q1 VIROLOGY Pub Date : 2024-06-25 DOI: 10.1016/j.tvr.2024.200285
Claire D. James , Raymonde O. Otoa , Aya H. Youssef , Christian T. Fontan , Malay K. Sannigrahi , Brad Windle , Devraj Basu , Iain M. Morgan

HPV + oropharyngeal squamous cell carcinoma (OPC) incidence recently surpassed cervical cancer and is the most common HPV-related cancer in the developed world. HPV16 is in ∼90 % of HPV + OPCs, with episomal genomes in the majority of cases. Most existing HPV16+ cancer cell lines derive from outside the oropharynx and harbor integrated HPV genomes. Thus, there is need for OPC preclinical models to evaluate standard and experimental therapeutics in the presence of episomal HPV16 oncogenic drivers. Here we characterize HPV genome structures in eight HPV16+ OPC patient-derived xenografts (PDXs), and evaluate their responses to standard chemotherapy. HPV genome state was investigated by combining Southern blot, T5 exonuclease assay, whole genome sequencing, and RNAseq data. This analysis revealed complexity and variation in integrated vs. episomal HPV forms across PDXs and demonstrated that four PDXs predominantly contain episomal HPV16. Episomal status did not ensure favorable in vivo responses to cisplatin therapy, despite the more favorable prognosis previously attributed to episomal HPV + tumors; this could be due to the small number present in the dataset. Our analysis establishes PDX models as test platforms for novel therapies designed to target maintenance of the episomal forms of HPV16 that commonly appear in OPC.

人乳头瘤病毒+口咽鳞状细胞癌(OPC)的发病率最近超过了宫颈癌,成为发达国家最常见的人乳头瘤病毒相关癌症。90%的HPV+口咽鳞状细胞癌中都含有HPV16,大多数病例中都含有外显子基因组。现有的大多数HPV16+癌细胞系来自口咽部以外的部位,并携带整合的HPV基因组。因此,有必要建立口咽癌临床前模型,以评估外显子HPV16致癌驱动因子存在时的标准和实验疗法。在这里,我们描述了 8 个 HPV16+ OPC 患者衍生异种移植物(PDXs)的 HPV 基因组结构,并评估了它们对标准化疗的反应。我们结合 Southern 印迹、T5 外切酶测定、全基因组测序和 RNAseq 数据对 HPV 基因组状态进行了研究。这项分析揭示了PDXs中整合型与表观型HPV的复杂性和差异,并证明有四个PDXs主要含有表观型HPV16。尽管表型 HPV + 肿瘤的预后较好,但表型状态并不能确保对顺铂治疗产生良好的体内反应;这可能是由于数据集中的肿瘤数量较少。我们的分析结果表明,PDX 模型可作为新型疗法的测试平台,这些疗法的目标是维持通常出现在 OPC 中的 HPV16 表观形式。
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引用次数: 0
Viral miRNA delivered by exosomes from Marek's disease virus-transformed lymphoma cell line exerts regulatory function in internalized primary chicken embryo fibroblast cells 马雷克氏病病毒转化的淋巴瘤细胞系外泌体传递的病毒 miRNA 在内化的原代鸡胚成纤维细胞中发挥调控功能。
IF 4.7 Q1 VIROLOGY Pub Date : 2024-06-22 DOI: 10.1016/j.tvr.2024.200286
Man Teng , Jun Luo , Yaoyao Zhang , Vishwanatha R.A.P. Reddy , Priya Samuel , Yongxiu Yao , Venugopal Nair

In the past decade, research has demonstrated that viral miRNAs encoded by a number of viral genomes, particularly by most of the herpesvirus including Marek's disease virus (MDV), play important regulatory roles in viral infection, replication, and regulation of tumorigenesis. As macrovesicles in cells, exosomes can deliver viral miRNAs and exert gene regulatory functions. Whether the exosomes play a role in the replication, pathogenesis/tumorigenesis of avian herpesviruses such as oncogenic Marek's disease virus (MDV) remains unclear. Herein we extracted and identified the exosomes from MDV-transformed T cell line MSB-1 and demonstrated high abundance of MDV-1 miRNA expression. Using dual luciferase-based reporter assay, we also demonstrated that the exosomes derived from MSB-1 can deliver functional miRNA successfully into primary chicken embryo fibroblasts. These findings provide new insights into the role of exosomes and the mechanisms of how virus-encoded miRNA function in MDV latency/activation switching, viral replication, pathogenesis and/or tumorigenesis.

过去十年的研究表明,一些病毒基因组编码的病毒 miRNA,特别是包括马立克氏病病毒(MDV)在内的大多数疱疹病毒编码的病毒 miRNA,在病毒感染、复制和调控肿瘤发生中发挥着重要的调控作用。作为细胞中的大囊泡,外泌体可传递病毒 miRNA 并发挥基因调控功能。外泌体是否在禽类疱疹病毒(如致癌的马立克氏病病毒(MDV))的复制、致病机理/肿瘤发生中发挥作用仍不清楚。在此,我们从经 MDV 转化的 T 细胞系 MSB-1 中提取并鉴定了外泌体,并证明了 MDV-1 miRNA 的高丰度表达。我们还利用基于荧光素酶的双重报告实验证明,从 MSB-1 提取的外泌体能成功地将功能性 miRNA 运送到原代鸡胚成纤维细胞中。这些发现为了解外泌体的作用以及病毒编码的miRNA如何在MDV潜伏/激活转换、病毒复制、致病和/或肿瘤发生中发挥作用的机制提供了新的视角。
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引用次数: 0
A peptide derived from sorting nexin 1 inhibits HPV16 entry, retrograde trafficking, and L2 membrane spanning 一种从分拣奈克辛 1 提取的多肽可抑制 HPV16 的进入、逆行运输和 L2 膜跨越。
IF 4.7 Q1 VIROLOGY Pub Date : 2024-06-21 DOI: 10.1016/j.tvr.2024.200287
Shuaizhi Li , Zachary L. Williamson , Matthew A. Christofferson , Advait Jeevanandam , Samuel K. Campos

High risk human papillomavirus (HPV) infection is responsible for 99 % of cervical cancers and 5 % of all human cancers worldwide. HPV infection requires the viral genome (vDNA) to gain access to nuclei of basal keratinocytes of epithelium. After virion endocytosis, the minor capsid protein L2 dictates the subcellular retrograde trafficking and nuclear localization of the vDNA during mitosis. Prior work identified a cell-permeable peptide termed SNX1.3, derived from the BAR domain of sorting nexin 1 (SNX1), that potently blocks the retrograde and nuclear trafficking of EGFR in triple negative breast cancer cells. Given the importance of EGFR and retrograde trafficking pathways in HPV16 infection, we set forth to study the effects of SNX1.3 within this context. SNX1.3 inhibited HPV16 infection by both delaying virion endocytosis, as well as potently blocking virion retrograde trafficking and Golgi localization. SNX1.3 had no effect on cell proliferation, nor did it affect post-Golgi trafficking of HPV16. Looking more directly at L2 function, SNX1.3 was found to impair membrane spanning of the minor capsid protein. Future work will focus on mechanistic studies of SNX1.3 inhibition, and the role of EGFR signaling and SNX1-mediated endosomal tubulation, cargo sorting, and retrograde trafficking in HPV infection.

全球 99% 的宫颈癌和 5% 的人类癌症都是由高危人类乳头瘤病毒(HPV)感染引起的。HPV 感染需要病毒基因组(vDNA)进入上皮基底角质细胞核。病毒内吞后,次要帽状蛋白 L2 决定了 vDNA 在有丝分裂过程中的亚细胞逆行运输和核定位。之前的研究发现了一种细胞渗透性多肽 SNX1.3,该多肽来自分选神经蛋白 1(SNX1)的 BAR 结构域,能有效阻断表皮生长因子受体在三阴性乳腺癌细胞中的逆行和核运输。鉴于表皮生长因子受体和逆行运输途径在 HPV16 感染中的重要性,我们开始研究 SNX1.3 在此背景下的作用。SNX1.3 既能延缓病毒的内吞,又能有效阻断病毒的逆行贩运和高尔基体定位,从而抑制 HPV16 感染。SNX1.3 对细胞增殖没有影响,也不影响 HPV16 在高尔基体后的贩运。从更直接的 L2 功能来看,SNX1.3 会影响小帽膜蛋白的膜跨越。未来的工作将侧重于 SNX1.3 抑制的机理研究,以及表皮生长因子受体信号转导和 SNX1 介导的内体管化、货物分拣和逆向贩运在 HPV 感染中的作用。
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引用次数: 0
Editorial board member 编辑委员会成员
IF 4.3 Q1 VIROLOGY Pub Date : 2024-06-01 DOI: 10.1016/S2666-6790(24)00007-7
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引用次数: 0
Cervical cytology and HPV distribution in Cape Verde: A snapshot of a country taken during its first HPV nation-wide vaccination campaign 佛得角的宫颈细胞学和人类乳头瘤病毒分布情况:首次在全国范围内开展人类乳头瘤病毒疫苗接种活动期间的国家快照。
IF 4.3 Q1 VIROLOGY Pub Date : 2024-06-01 DOI: 10.1016/j.tvr.2024.200280
Rita Vieira , Diana Montezuma , Carla Barbosa , Isabel Macedo Pinto

Cervical cancer ranks as the third most common female cancer in Cape Verde and is the leading cause of cancer-related deaths among women in the country. While Human Papillomavirus (HPV) vaccination, which started in 2021, is anticipated to significantly reduce disease incidence, cervical screening remains crucial for non-vaccinated women. We retrospectively reviewed gynecologic cytology exams and HPV tests performed in Cape Verde between 2017 and April 2023 and processed at IMP Diagnostics. For this study, we considered 13035 women with cytology examinations performed and, 2013 of these, also with an HPV molecular test. Cytology diagnostics comprised 83 % NILM cases; 12 % ASC-US; 2.7 % LSIL; 1.2 % ASC-H; 0.5 % HSIL and 0.1 % SCC. In 505 (25.1 %) high-risk HPV infection was detected. Prevalence of HPV infection varied with age, peaking at young ages - ≤24 years old (55.5 %) and 25-35-year-old women (31.5 %) - and the lowest after 66 years old (9.7 %). Herein we present a comprehensive study regarding Cape Verde's cervical cytology and HPV distribution, aiming to provide a snapshot of the country's cervical cytology results and HPV distribution in recent years. Moreover, these data may contribute to establish a baseline to assess, in the future, the vaccination impact in the country.

宫颈癌是佛得角第三大最常见的女性癌症,也是该国妇女因癌症死亡的主要原因。虽然 2021 年开始的人乳头状瘤病毒(HPV)疫苗接种预计将大大降低疾病的发病率,但宫颈筛查对于未接种疫苗的妇女仍然至关重要。我们回顾性地审查了 2017 年至 2023 年 4 月期间在佛得角进行的妇科细胞学检查和 HPV 检测,并在 IMP 诊断公司进行了处理。在这项研究中,我们考虑了 13035 名进行过细胞学检查的女性,其中 2013 名还进行了 HPV 分子检测。细胞学诊断包括83%的NILM病例;12%的ASC-US;2.7%的LSIL;1.2%的ASC-H;0.5%的HSIL和0.1%的SCC。在 505 例(25.1%)中检测到高危 HPV 感染。HPV感染率随年龄而变化,年轻女性感染率最高,≤24岁(55.5%),25-35岁(31.5%),66岁以后感染率最低(9.7%)。在此,我们提交了一份有关佛得角宫颈细胞学和人乳头瘤病毒分布情况的综合研究报告,旨在提供该国近年来宫颈细胞学结果和人乳头瘤病毒分布情况的快照。此外,这些数据还有助于建立一个基线,以便将来评估疫苗接种在该国的影响。
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引用次数: 0
Juvenile onset recurrent respiratory papillomatosis: What do we know in 2024 ? 青少年复发性呼吸道乳头状瘤病:2024 年我们将知道什么?
IF 4.3 Q1 VIROLOGY Pub Date : 2024-04-27 DOI: 10.1016/j.tvr.2024.200281
Charles Lepine , Nicolas Leboulanger , Cécile Badoual

Juvenile onset recurrent respiratory papillomatosis is a lifelong benign squamous lesion associated with HPV infection, particularly HPV6 and HPV11 genotypes. These lesions are rare, but can lead to laryngeal obturations, which can cause disabling dyspnea, or transform into squamous cell carcinoma. The aim here is to provide an epidemiological, biological and clinical overview of this pathology, particularly in children, in order to understand the issues at stake in terms of research and the development of medical and therapeutic management tools.

幼年复发性呼吸道乳头状瘤病是一种终身性良性鳞状病变,与人乳头状瘤病毒感染有关,尤其是人乳头状瘤病毒 6 和人乳头状瘤病毒 11 基因型。这种病变很少见,但可导致喉闭塞,引起致残性呼吸困难,或转化为鳞状细胞癌。本文旨在从流行病学、生物学和临床角度概述这种病变,尤其是儿童病变,以便了解在研究和开发医疗及治疗管理工具方面存在的问题。
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引用次数: 0
HPV16 E7 modulates the cell surface expression of MET and CD109 via the AP2 complex HPV16 E7 通过 AP2 复合物调节细胞表面 MET 和 CD109 的表达。
IF 4.3 Q1 VIROLOGY Pub Date : 2024-03-12 DOI: 10.1016/j.tvr.2024.200279
Oscar Trejo-Cerro , Om Basukala , Michael P. Myers , Lawrence Banks

Multiple cellular pathways are affected by HPV E6 and E7 oncoproteins, including endocytic and cellular trafficking. HPV-16 E7 can target the adaptor protein (AP) complex, which contains proteins important during endocytosis transport. To further investigate the role of HPV E7 during this process, we analysed the expression of cell surface proteins in NIKS cells expressing HPV-16 E7. We show that different cell surface proteins are regulated by HPV-16 E7 via interaction with AP2. We observed that the expression of MET and CD109 membrane protein seems to be upregulated in cells expressing E7. Moreover, the interaction of MET and CD109 with AP2 proteins is disrupted by HPV-16 E7. In addition, in the absence of HPV-16 E7, there is a downregulation of the cell membrane expression of MET and CD109 in HPV-positive cell lines. These results expand our knowledge of the functions of E7 and open new potential cellular pathways affected by this oncoprotein.

多种细胞通路会受到 HPV E6 和 E7 肿瘤蛋白的影响,包括内吞和细胞转运。HPV-16 E7 可靶向适配蛋白(AP)复合物,该复合物包含内吞转运过程中的重要蛋白质。为了进一步研究 HPV E7 在这一过程中的作用,我们分析了表达 HPV-16 E7 的 NIKS 细胞中细胞表面蛋白的表达情况。我们发现,HPV-16 E7 通过与 AP2 相互作用调控不同的细胞表面蛋白。我们观察到,在表达 E7 的细胞中,MET 和 CD109 膜蛋白的表达似乎被上调。此外,HPV-16 E7 破坏了 MET 和 CD109 与 AP2 蛋白的相互作用。此外,在没有 HPV-16 E7 的情况下,HPV 阳性细胞系中 MET 和 CD109 的细胞膜表达下调。这些结果拓展了我们对 E7 功能的认识,并开辟了受这种肿瘤蛋白影响的新的潜在细胞通路。
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引用次数: 0
Surveillance of human papillomavirus through salivary diagnostics - A roadmap to early detection of oropharyngeal cancer men 通过唾液诊断监测人类乳头瘤病毒--男性口咽癌早期检测路线图。
IF 4.3 Q1 VIROLOGY Pub Date : 2024-03-03 DOI: 10.1016/j.tvr.2024.200278
Akila Wijesekera , Chameera Ekanayake Weeramange , Sarju Vasani , Liz Kenny , Emma Knowland , Jayampath Seneviratne , Chamindie Punyadeera

Human papillomavirus (HPV) is the most common sexually transmitted disease. Certain strains have the potential to cause malignancy in multiple anatomical sites if not cleared by the immune system. In most infected people, HPV is cleared within two years. However, HPV may persist in susceptible individuals with certain risk factors, eventually leading to malignancy. New evidence suggests that over 75% of all oropharyngeal cancers (OPC) are directly attributable to HPV. It is estimated that prophylactic HPV vaccination alone may take at least 25 years to have a significant impact on reducing the incidence of OPC. The temporal link between detection of oral HPV, persistence of the infection and the subsequent development of OPC have been well established. Moreover, men have threefold higher risk than women for acquiring HPV-OPC. This comprehensive review focuses on OPC development in men, highlighting the risk factors associated with malignant transformation of HPV-OPC. Current evidence is insufficient to determine whether early identification of at-risk demographics, screening, and prompt diagnosis result in improved outcomes. Hitherto, the effectiveness of an oral HPV screening program in this regard has not been investigated. Nevertheless, the potential to emulate the success of the cervical screening program remains a very real possibility.

人类乳头瘤病毒(HPV)是最常见的性传播疾病。某些病毒株如果不被免疫系统清除,有可能在多个解剖部位引发恶性肿瘤。大多数感染者的 HPV 会在两年内被清除。然而,HPV 可能会在具有某些风险因素的易感人群中持续存在,最终导致恶性肿瘤。新证据表明,超过 75% 的口咽癌(OPC)可直接归因于 HPV。据估计,单靠预防性 HPV 疫苗接种可能至少需要 25 年才能对降低口咽癌发病率产生显著影响。口腔人乳头瘤病毒的检测、感染的持续存在以及随后发展成 OPC 之间的时间联系已得到充分证实。此外,男性感染 HPV-OPC 的风险是女性的三倍。本综述重点关注男性 OPC 的发展,强调与 HPV-OPC 恶性转化相关的风险因素。目前的证据不足以确定早期识别高危人群、筛查和及时诊断是否能改善预后。迄今为止,口腔 HPV 筛查项目在这方面的有效性尚未得到研究。尽管如此,仿效宫颈筛查计划的成功仍有很大的可能性。
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引用次数: 0
E4orf1: The triple agent of adenovirus – Unraveling its roles in oncogenesis, infectious obesity and immune responses in virus replication and vector therapy E4orf1:腺病毒的三重药剂--揭示其在肿瘤发生、传染性肥胖以及病毒复制和载体治疗中的免疫反应中的作用。
IF 4.3 Q1 VIROLOGY Pub Date : 2024-02-28 DOI: 10.1016/j.tvr.2024.200277
Lilian Göttig , Sabrina Schreiner

Human Adenoviruses (HAdV) are nearly ubiquitous pathogens comprising numerous sub-types that infect various tissues and organs. Among many encoded proteins that facilitate viral replication and subversion of host cellular processes, the viral E4orf1 protein has emerged as an intriguing yet under-investigated player in the complex interplay between the virus and its host. E4orf1 has gained attention as a metabolism activator and oncogenic agent, while recent research is showing that E4orf1 may play a more important role in modulating cellular pathways such as PI3K-Akt-mTOR, Ras, the immune response and further HAdV replication stages than previously anticipated.

In this review, we aim to explore the structure, molecular mechanisms, and biological functions of E4orf1, shedding light on its potentially multifaceted roles during HAdV infection, including metabolic diseases and oncogenesis. Furthermore, we discuss the role of functional E4orf1 in biotechnological applications such as Adenovirus (AdV) vaccine vectors and oncolytic AdV. By dissecting the intricate relationships between HAdV types and E4orf1 proteins, this review provides valuable insights into viral pathogenesis and points to promising areas of future research.

人类腺病毒(HAdV)是一种几乎无处不在的病原体,由许多亚型组成,可感染各种组织和器官。在许多促进病毒复制和颠覆宿主细胞过程的编码蛋白中,病毒 E4orf1 蛋白已成为病毒与其宿主之间复杂相互作用中一个令人感兴趣但研究不足的角色。E4orf1 作为一种新陈代谢激活剂和致癌物质而备受关注,而最近的研究表明,E4orf1 在调节 PI3K-Akt-mTOR、Ras、免疫反应和 HAdV 进一步复制阶段等细胞通路方面可能发挥着比以前预期的更重要的作用。在这篇综述中,我们旨在探讨 E4orf1 的结构、分子机制和生物功能,揭示其在 HAdV 感染过程中可能发挥的多方面作用,包括代谢性疾病和肿瘤发生。此外,我们还讨论了功能性 E4orf1 在腺病毒(AdV)疫苗载体和溶瘤 AdV 等生物技术应用中的作用。通过剖析 HAdV 类型和 E4orf1 蛋白之间错综复杂的关系,这篇综述为病毒的发病机制提供了宝贵的见解,并指出了未来有希望的研究领域。
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引用次数: 0
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