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The role of epigenetic regulation in adaptive phenotypic plasticity of plants 表观遗传调控在植物适应性表型可塑性中的作用
Pub Date : 2021-10-29 DOI: 10.15407/ukrbotj78.05.347
E. Kordyum, D. Dubyna
In recent decades, knowledge about the role of epigenetic regulation of gene expression in plant responses to external stimuli and in adaptation of plants to adverse environmental fluctuations have extended significantly. DNA methylation is considered as the main molecular mechanism that provides genomic information and contributes to the understanding of the molecular basis of phenotypic variations based on epigenetic modifications. Unfortunately, the vast majority of research in this area has been performed on the model species Arabidopsis thaliana. The development of the methylation-sensitive amplified polymorphism (MSAP) method has made it possible to implement the large-scale detection of DNA methylation alterations in wild non-model and agricultural plants with large and highly repetitive genomes in natural and manipulated habitats. The article presents current information on DNA methylation in species of natural communities and crops and its importance in plant development and adaptive phenotypic plasticity, along with brief reviews of current ideas about adaptive phenotypic plasticity and epigenetic regulation of gene expression. The great potential of further studies of the epigenetic role in phenotypic plasticity of a wide range of non-model species in natural populations and agrocenoses for understanding the molecular mechanisms of plant existence in the changing environment in onto- and phylogeny, directly related to the key tasks of forecasting the effects of global warming and crop selection, is emphasized. Specific taxa of the Ukrainian flora, which, in authors’ opinion, are promising and interesting for this type of research, are recommended.
近几十年来,关于表观遗传调控基因表达在植物对外部刺激的反应和植物对不利环境波动的适应中的作用的知识有了显著的扩展。DNA甲基化被认为是提供基因组信息的主要分子机制,有助于理解基于表观遗传修饰的表型变异的分子基础。不幸的是,这一领域的绝大多数研究都是在模式物种拟南芥(Arabidopsis thaliana)上进行的。甲基化敏感扩增多态性(methyl- sensitive amplification polymorphism, MSAP)方法的发展,使得在自然和人工控制的生境中,大规模检测具有大且高度重复基因组的野生非模式植物和农业植物的DNA甲基化变化成为可能。本文介绍了自然群落和作物物种DNA甲基化的最新研究进展及其在植物发育和适应性表型可塑性中的重要性,并简要综述了目前关于适应性表型可塑性和基因表达表观遗传调控的研究进展。强调了进一步研究表观遗传在自然种群和农合植物群落中广泛非模式物种表型可塑性中的作用,以了解植物在变化环境中生存的分子机制和系统发育,直接关系到预测全球变暖和作物选择的关键任务。乌克兰植物群的具体分类群,其中,在作者看来,是有前途的和有趣的这种类型的研究,推荐。
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引用次数: 1
A new record of the rare fungus Hericium erinaceus (Russulales) in Ukraine 乌克兰罕见真菌猴头菇的新记录
Pub Date : 2021-10-29 DOI: 10.15407/ukrbotj78.05.365
F. P. Tkachenko, M. Prydiuk
A new locality of the rare fungus Hericium erinaceus, the species to be included in the Red Data Book of Ukraine, is reported. The fungus was found in Odesa city, for the first time in the steppe zone of Ukraine. This species is an edible and biotechnologically valuable fungus. A description of the new locality and macro- and micromorphological characters of the found fruit bodies are provided. The information about its distribution in Ukraine and worldwide, as well as the original illustrations, are presented.
据报道,将被列入乌克兰红色数据手册的稀有真菌猴头菇的一个新产地。这种真菌是在敖德萨市发现的,这是第一次在乌克兰的草原地区发现。该物种是一种可食用的、具有生物技术价值的真菌。对新发现的果体的新位置、宏观和微观形态特征进行了描述。介绍了其在乌克兰和世界各地的分布情况,以及原始插图。
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引用次数: 0
Vegetation of the Dniester Canyon and assessment of its adaptive potential 德涅斯特峡谷植被及其适应潜力评价
Pub Date : 2021-08-30 DOI: 10.15407/ukrbotj78.04.282
Y. Didukh, Yu.V. Rozenblit, I. Chorney, V. Budzhak, A.I. Tokariuk
Syntaxonomy of the natural vegetation of the Dniester Canyon, including 20 classes, 30 orders, 44 alliances, and 71 associations, is presented. The natural vegetation of the canyon is formed by communities of the classes Carpino-Fagetea sylvaticae, Quercetea pubescentis, Quercetea robori-petraeae, Alno glutinosae-Populetea albae, Crataego-Prunetea, Festuco-Brometea, Trifolio-Geranietea sanguine, Molinio-Arrhenatheretea, Sedo-Scleranthetea, Phragmito-Magnocaricetea, Bolboschoenetea maritimi, and Isoëto-Nanojuncetea. Grassland vegetation is characterized by the highest syntaxonomic diversity. Quantitative assessment of syntaxonomic diversity in the three-dimensional system of ecological strategies of species according to Ramensky-Grime (CRS) was carried out. Adaptive capabilities, i.e. the potential for possible further development of forest, shrub and grassland habitats, have been assessed. It has been found that the dynamics of forest shrub, grass meadow and steppe communities is determined by successive endoecogenetic processes. In petrophytic communities, fluctuation changes are not manifested and successional changes are rather limited. Significant fluctuations are inherent in floodplain grasslands that depend on the sharp variability of moisture during the growing season. At the same time, it is emphasized that actual realization of these processes depends on influences of external drivers that can be considered as regulatory factors in possible development of syntaxa.
本文介绍了德涅斯特峡谷天然植被的分类学,包括20纲30目44属71联合。峡谷的天然植被由Carpino-Fagetea sylvaticae、Quercetea pubescentis、Quercetea robori- peteae、Alno glutinosa - popletea albae、creataeo - prunetea、Festuco-Brometea、Trifolio-Geranietea sanguine、molinio - arrhenathetea、Sedo-Scleranthetea、Phragmito-Magnocaricetea、Bolboschoenetea maritimi和Isoëto-Nanojuncetea等植物群落组成。草地植被的区系多样性最高。采用Ramensky-Grime (CRS)方法,对物种生态策略三维系统的分类学多样性进行了定量评价。已经评估了适应能力,即进一步开发森林、灌木和草地生境的潜力。研究发现,森林灌木、草甸和草原群落的动态是由连续的内生过程决定的。在岩生植物群落中,波动变化不明显,演替变化相当有限。泛滥平原草原的显著波动是固有的,这取决于生长季节湿度的急剧变化。同时强调,这些过程的实际实现取决于外部驱动因素的影响,这些驱动因素可以被认为是句法可能发展的调节因素。
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引用次数: 0
Nomenclatural and taxonomic comments on some taxa of Dysphania (Chenopodiaceae s. str. / Amaranthaceae s. l.) 标题大花属某些分类群的命名与分类学评价(藜科s.str./苋科s.l.)
Pub Date : 2021-08-30 DOI: 10.15407/ukrbotj78.04.266
S. Mosyakin
Following the comprehensive molecular phylogenetic results presented by Uotila et al. (2021), comments are provided on the infrageneric classification system of the genus Dysphania in its amended circumscription. Amendments and additions to the five-section scheme of Uotila et al. (2021) are proposed. In particular, the morphologically distinct lineage containing Dysphania atriplicifolia (earlier widely recognized in the monospecific genus Cycloloma as C. atriplicifolium) is recognized as a separate section, Dysphania sect. Cycloloma (Moq.) Mosyakin, comb. et stat. nov. Extensive synonymy of the section and its species is provided. The subclades revealed in the Australian clade of Dysphania sect. Dysphania are rather well characterized morphologically and were treated earlier as sections of either Chenopodium (sensu lato) or Dysphania. These subclades are recognized here as three subsections of sect. Dysphania: (1) subsect. Orthospora (R.Br.) Mosyakin, comb. et stat. nov.; (2) subsect. Dysphania; and (3) subsect. Tetrasepalae (Aellen) Mosyakin, comb. et stat. nov. The nomenclature of Dysphania graveolens (≡ Chenopodium graveolens) is discussed. It is confirmed that the name Chenopodium graveolens was first validated not by Willdenow in 1809 but by Lagasca and Rodríguez in 1802. Original specimens associated with that name in both publications belong taxonomically to the same species currently known as D. graveolens (= Chenopodium incisum Poir.). In my opinion, Art. 41.8(a) of the ICN (Shenzhen Code) is directly applicable here. Consequently, the name D. graveolens should be cited with the corrected authorship "(Lag. & Rodr.) Mosyakin & Clemants", and the new combination in Dysphania based on Chenopodium incisum (provisionally cited in POWO as "Dysphania incisa (Poir.) ined.") is unnecessary.
根据Uotila等人提出的综合分子系统发育结果。(2021),在其修订的范围内对戴氏菌属的亚属分类系统发表了评论。建议对Uotila等人(2021)的五节方案进行修订和增补。特别是,在形态上不同的谱系中,包含三褶假丝酵母(早先在单分种的Cycloloma属中被广泛认为是三褶假氏酵母)被认为是一个单独的部分,即假丝酵母门。Cycloloma(Moq.)Mosyakin,梳。et stat.nov.提供了该节及其物种的广泛同义词。在戴斯法尼派的澳大利亚分支中发现的子支。发汗症在形态学上有很好的特征,早期被视为藜属或发汗症的切片。这些小节在这里被认为是第三节的三个小节。发汗障碍:(1)小节。正孢菌(R.Br.)Mosyakin,梳。等人,11月。;(2) 第。发疹;和(3)第。四萼片虫(Aellen)Mosyakin,梳。et stat.nov.讨论了graveolens的命名法。已经证实,Chenopodium graveolens这个名字最初不是由Willdenow在1809年验证的,而是由Lagasca和Rodríguez在1802年验证的。在这两份出版物中,与该名称相关的原始标本在分类学上属于目前被称为D.graveolens(=Chenopodium incisum Poir.)的同一物种。我认为,《深圳规范》第41.8(a)条直接适用于此。因此,D.graveolens的名字应与更正后的作者“(Lag.&Rodr.)Mosyakin&Clements”一起引用,并且基于Chenopodium incsum的新组合(在POWO中暂时引用为“Dysphania incisa(Poir.)ined”)在Dysphannia中是不必要的。
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引用次数: 0
First record of Phyllactinia moricola (Erysiphales, Ascomycota) on Morus alba in Europe 欧洲桑树上moricola Phyllactinia (Erysiphales,子囊菌科)的首次记录
Pub Date : 2021-08-30 DOI: 10.15407/ukrbotj78.04.274
V. Heluta, V. Korytnianska
Information on the record of Phyllactinia moricola, a new in Ukraine alien powdery mildew fungus, is reported. The teleomorph of the fungus was collected in October–December 2020 on Morus alba in Odesa. The description and illustrations of the studied material are provided. The disease caused by this species can significantly reduce the ornamental properties of mulberry, a popular plant that is often used in greenery in the settlements of Ukraine. It is noted that the fungus can spread to Southern Europe, where it may cause significant damage to horticulture and silk production.
报道了乌克兰一种新的外来白粉菌Phyllacinia moricola的记录资料。该真菌的硬骨形体于2020年10月至12月在敖德萨的桑属植物上采集。提供了所研究材料的说明和插图。这种物种引起的疾病会显著降低桑树的观赏性,桑树是乌克兰定居点常用的一种常见植物。值得注意的是,这种真菌可以传播到南欧,在那里它可能会对园艺和丝绸生产造成重大损害。
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引用次数: 0
Leptospermum repo (Myrtaceae), a new species from northern Aotearoa / New Zealand peat bog habitats, segregated from Leptospermum scoparium s. l. 从新西兰北部泥炭沼泽中分离出来的细尾草(金桃科)一新种。
Pub Date : 2021-08-30 DOI: 10.15407/ukrbotj78.04.247
P. Lange, Luzie M. H. Schmid
Leptospermum repo de Lange & L.M.H.Schmid sp. nov. (Myrtaceae) is segregated from L. scoparium J.R.Forst. & G.Forst. (sensu lato). The new species is endemic to the peat bogs of the Waikato, Bay of Plenty, and adjacent eastern ranges of the northern portion of Te Ika a Maui / North Island, Aotearoa / New Zealand. The new species belongs to the northern Te Ika a Maui / North Island clade of L. scoparium s. l., from whose other members it is morphologically distinguished by its gracile, spindly, open-branched growth habit; widely divergent, longer, linear, linear-lanceolate (rarely filiform), shortly cuspidate leaves; flowers with white petals, stamens mostly with white filaments (very rarely tinged pink near base), and by the style and stigma which are usually green (very rarely pink). Leptospermum repo now occupies ca. 10% of its former peat bog habitat, where aside from a few protected peat bogs the species is still in decline through loss of its habitat. A more recent potential threat to L. repo is myrtle rust disease, caused by Austropuccinia psidii, an exotic rust first detected in Aotearoa / New Zealand in May 2017. This rust poses a serious threat to the Myrtaceae of Aotearoa / New Zealand, for which there is at present no known effective treatment to prevent the death of infected hosts. Therefore, due to the historic loss of habitat, a threat which is still ongoing, causing the decline of many L. repo populations; and the potential threat of Austropuccinia psidii to this species, the listing proposed for the species (as Leptospermum aff. scoparium (c) (AK191319; "Waikato peat bog") by the New Zealand Indigenous Vascular Plant Threat Listing Panel of "Threatened / Nationally Critical DP, De" is here upheld.
Leptispermum repo de Lange&L.M.H.Schmid sp.nov.(Myrtacee)与L.scoperium J.R.Forst.&G.Forst.(sensu lato)分离。该新物种是怀卡托泥炭沼泽、丰盛湾和邻近的Te Ika a Maui/北岛东部山脉、Aotearoa/新西兰的特有物种。该新种属于L.scopearium s.L.的Te Ika a Maui/北岛北部分支,在形态上与其他成员的区别在于其纤细、细长、开放分支的生长习性;宽发散,较长,线形,线形披针形(很少丝状),短尖的叶;花有白色花瓣,雄蕊大多有白色花丝(很少在基部附近略带粉红色),花柱和柱头通常为绿色(很少为粉红色)。Leptispermum repo现在占据了其以前泥炭沼泽栖息地的约10%,除了一些受保护的泥炭沼泽外,该物种仍在因栖息地的丧失而减少。最近对L.repo的一个潜在威胁是桃金娘锈病,该病由psidii Austropuccinia引起,这是2017年5月首次在新西兰奥特亚发现的一种外来铁锈。这种铁锈对新西兰奥特亚的杨梅科构成了严重威胁,目前还没有已知的有效治疗方法来防止受感染宿主的死亡。因此,由于栖息地的历史性丧失,这种威胁仍在持续,导致许多L.repo种群数量下降;以及澳冰藻对该物种的潜在威胁,新西兰本土维管植物威胁清单小组提出的“受威胁/国家关键DP,De”的物种清单(Leptispermum aff.scoparium(c)(AK191319;“怀卡托泥炭沼泽”)在此得到支持。
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引用次数: 5
The first record of Elodea nuttallii (Hydrocharitaceae) in the Lower Dnipro River 第聂伯罗河下游第一个水藻科(Elodea nuttalli)记录
Pub Date : 2021-08-30 DOI: 10.15407/ukrbotj78.04.303
A. Davydova, K. Orlova-Hudim, I. Shevchenko, D. Davydov, V. Dzerkal
Six localities of Elodea nuttallii were found in 2020 in the Lower Dnipro River (Kherson Region) within the territory of Nyzhniodniprovskyi National Nature Park. These are the first verified records of this alien aquatic plant (native to North America) in the Steppe Zone of Ukraine. Previously, it has been reported in Ukraine only from the Forest (Kyiv city) and Forest-Steppe (Kyiv, Poltava and Cherkasy administrative regions) zones. Geographic coordinates, depths and substrate are reported for all found localities. Geobotanical data about this species in Ukraine are summarized. It is assumed that Elodea nuttallii as a potentially invasive species in this region may occur not only in the Lower Dnipro River but also in all reservoirs on this river.
2020年,在尼日尼普罗夫斯基国家自然公园范围内的下第聂伯罗河(赫尔松地区)发现了六个Elodea nuttalli地区。这是乌克兰草原区首次证实这种外来水生植物(原产于北美)的记录。此前,乌克兰仅从森林(基辅市)和森林草原(基辅、波尔塔瓦和切尔卡西行政区)地区报告了这种情况。报告了所有发现地点的地理坐标、深度和基底。总结了乌克兰有关该物种的地理植物学数据。据推测,Elodea nuttalli作为该地区的潜在入侵物种,不仅可能出现在第聂伯河下游,而且可能出现在该河上的所有水库中。
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引用次数: 1
A recent find of Ophrys insectifera (Orchidaceae) in Ukraine – will it survive another 100 years? 最近在乌克兰发现的一种Ophrys杀虫兰(兰科)——它还能再活100年吗?
Pub Date : 2021-08-30 DOI: 10.15407/ukrbotj78.04.297
J. Roleček
Here I report the first find of Ophrys insectifera in Ukraine since 1920. A single individual was found at its last recorded site, Chortova Hora near Rohatyn (Ivano-Frankivsk Region). The species occurs in a steppe meadow habitat situated in the lower part of a steep northern slope. Local vegetation may be classified to a broadly circumscribed association Brachypodio pinnati-Molinietum arundinaceae from the alliance Cirsio-Brachypodion pinnati (class Festuco-Brometea). I discuss possible causes of the long-term neglect of O. insectifera at the site, its habitat conditions and suitable conservation management. To ensure the continued occurrence of this poor competitor and other rare species, it is necessary to prevent accumulation of litter and successional changes of the grassland. Mowing, low-intensity grazing, controlled early spring burning or their combination may be suitable ways to achieve this.
在这里,我报告自1920年以来在乌克兰发现的第一种昆虫。在Rohatyn附近的Chortova Hora (Ivano-Frankivsk地区)发现了一个单独的个体。该物种发生在位于北部陡坡下部的草原草甸栖息地。本地植被可划分为从卷叶蕨-卷叶蕨(Festuco-Brometea纲)联合而来的一个范围广泛的丛。我讨论了长期被忽视的可能原因,其栖息地条件和适当的保护管理。为了保证这种弱竞争物种和其他稀有物种的持续存在,必须防止凋落物的积累和草地的演替变化。割草、低强度放牧、控制早春焚烧或它们的组合可能是实现这一目标的合适方法。
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引用次数: 1
Ruderal vegetation of Kyiv City. I. Class Stellarietea mediae Tx. et al. in Tx. 1950 基辅市的地表植被。I.1950年Tx等人的Stellarietea mediae类
Pub Date : 2021-06-29 DOI: 10.15407/ukrbotj78.03.176
D. Dubyna, S. Iemelianova, T. Dziuba, N. Yeremenko, P. Tymoshenko
This article, which is the first contribution in a series on the ruderal vegetation of the city of Kyiv, presents results of our studies of Stellarietea mediae plant communities occurring in the city. Their current state and phytocoenotic diversity has been determined. Based on modern methods of statistical data analyses, a classification scheme of Stellarietea mediae vegetation in the study area was developed and the leading factors of territorial and ecological differentiation of phytocoenoses were identified. It has been established that within Kyiv City, this class is represented by 24 associations and 3 basal communities belonging to 8 alliances and 4 orders. Their territorial distribution determines the types and intensity of anthropogenic disturbances, as well as the types of soil and its mechanical structure. Selected syntaxa are characterized and compared with their equivalents from other areas of Ukraine. It has been found that the main differences are at the level of co-occurring species, the composition of which mostly correlates with the types of anthropogenic disturbances and availability of water and mineral nutrients. According to the results of the ordination, it has been found that the distribution patterns of plant communities of Stellarietea mediae occur along the salt regime gradient of the edaphotope, as well as of ombro-, cryo-, and thermal regimes of the climate. Based on the phytoindication analysis, the ecological optimums of the plant communities in relation to the leading ecological factors were determined. The performed research supplements the available information about the presence and distribution of such associations as: Digitarietum ischaemii, Setario viridis-Erigeronetum canadensis, and Ambrosietum artemisiifoliae, in the territory of Ukraine. The proposed syntaxonomic scheme should become a basis of typological developments for strategic planning and practical implementation of activities for optimizing the urban environment and for sustainable development of the Kyiv urban agglomeration.
这篇文章,这是在基辅市的农村植被系列的第一份贡献,介绍了我们的研究结果星属植物群落发生在城市。它们的现状和植物群落多样性已被确定。基于现代统计数据分析方法,建立了研究区星形植物群落的分类体系,确定了星形植物群落地域分异和生态分异的主导因子。已经确定,在基辅市内,这一类由24个协会和3个基础社区代表,属于8个联盟和4个命令。它们的地域分布决定了人为干扰的类型和强度,也决定了土壤的类型及其机械结构。选定的句法特征,并与他们的等效从乌克兰其他地区进行比较。研究发现,主要的差异在共生物种的水平上,其组成主要与人为干扰的类型以及水和矿物营养物质的可得性有关。根据排序结果,发现星属草本植物群落的分布模式沿植被的盐势梯度分布,也沿气候的低温、低温和热势分布。在植物指示性分析的基础上,确定了与主要生态因子相关的植物群落生态最优值。所进行的研究补充了关于在乌克兰领土上存在和分布的诸如:Digitarietum ischaemii、serario viridiss - erigeronetum canadensis和Ambrosietum artemisiifoliae等关联的现有信息。拟议的分类学方案应成为战略规划和实际执行活动的类型学发展的基础,以优化城市环境和基辅城市群的可持续发展。
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引用次数: 1
Spanning the Globe – The Plant Phylogeny Poster (PPP) Project 跨越全球-植物系统发育海报(PPP)项目
Pub Date : 2021-06-29 DOI: 10.15407/ukrbotj78.03.235
Theodor C. H. Cole, H. Hilger, J. Bachelier, P. Stevens, B. Goffinet, N. Shiyan, S. Zhygalova, S. Mosyakin
Historically, wallcharts and posters created by botanical illustrators, often highly skilled artists, have played an important role in teaching botany at the university level. Large-scale panels and posters can visualize complex interrelationships and entire stories in a clear and appealing overview in graphs, tables, and diagrams. Carrying this concept of educational tools into the electronic era, the Plant Phylogeny Poster project uses this approach for displaying evolutionary relationships in systematic botany. The Angiosperm Phylogeny Poster (APP) displays, as phylogenetically arranged clades, the orders and families of flowering plants (with orders hyperlinked to APweb, Stevens, 2001–onwards), the Tracheophyte Phylogeny Poster (TPP) families and genera of ferns and gymnosperms, and the Bryophyte Phylogeny Poster (BPP) orders and families of liverworts, mosses, and hornworts. The portfolio currently also includes about 30 posters on individual orders and families of angiosperms. Each group within these evolutionary trees is matched with essentially relevant morphological features, biogeographic occurrences, and other information in compactly condensed text blocks. All posters are freely available online, some in more than 30 languages, coauthored by a team of more than 130 botanists. The posters are regularly updated, current literature is cited. The project is expanding steadily and rapidly.
从历史上看,植物插画家(通常是技艺高超的艺术家)创作的挂图和海报在大学水平的植物学教学中发挥了重要作用。大型面板和海报可以将复杂的相互关系和整个故事可视化,以图形、表格和图表的形式清晰而吸引人的概述。将这种教育工具的概念带入电子时代,植物系统发育海报项目使用这种方法来展示系统植物学中的进化关系。被子植物系统发育贴(APP)显示了开花植物的目和科(与APweb超链接,Stevens, 2001 -起),蕨类植物和裸子植物的管生植物系统发育贴(TPP)科和属,苔藓植物系统发育贴(BPP)的苔类植物、苔藓植物和角苔植物的目和科。该作品集目前还包括大约30张被子植物单目和科的海报。这些进化树中的每一个群体都与基本相关的形态特征、生物地理事件和其他信息相匹配,这些信息被压缩在紧凑的文本块中。所有海报都可以在网上免费获得,有些海报用30多种语言制作,由130多名植物学家组成的团队共同创作。海报定期更新,引用当前文献。该项目正在稳步快速地扩大。
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引用次数: 3
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