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Comparison of Khasi speech representations with different spectral features and hidden Markov states 不同谱特征和隐马尔可夫状态下卡西语语音表示的比较
Q1 Engineering Pub Date : 2021-06-01 DOI: 10.1016/j.jnlest.2020.100079
Bronson Syiem, Sushanta Kabir Dutta, Juwesh Binong, Lairenlakpam Joyprakash Singh

In this paper, we present a comparison of the Khasi speech representations with four different spectral features and novel extension towards the development of Khasi speech corpora. These four features include linear predictive coding (LPC), linear prediction cepstrum coefficient (LPCC), perceptual linear prediction (PLP), and Mel frequency cepstral coefficient (MFCC). The 10-h speech data was used for training and 3-h data for testing. For each spectral feature, different hidden Markov model (HMM) based recognizers with variations in HMM states and different Gaussian mixture models (GMMs) were built. The performance was evaluated by using the word error rate (WER). The experimental results showed that MFCC provides a better representation for Khasi speech compared with the other three spectral features.

本文对四种不同谱特征的卡西语语音表示进行了比较,并对卡西语语料库的发展进行了新的拓展。这四个特征包括线性预测编码(LPC)、线性预测倒谱系数(LPCC)、感知线性预测(PLP)和Mel频率倒谱系数(MFCC)。10小时的语音数据用于训练,3小时的语音数据用于测试。针对不同的谱特征,分别构建了基于隐马尔可夫模型(HMM)的不同状态识别器和不同的高斯混合模型(GMMs)。使用单词错误率(WER)来评估性能。实验结果表明,与其他三种频谱特征相比,MFCC能更好地表征卡西语。
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引用次数: 2
Perovskite single crystals: Synthesis, properties, and applications 钙钛矿单晶:合成、性质和应用
Q1 Engineering Pub Date : 2021-06-01 DOI: 10.1016/j.jnlest.2021.100081
Shan-Shan Rong , M. Bilal Faheem , Yan-Bo Li

Perovskite single crystals have gained enormous attention in recent years due to their facile synthesis and excellent optoelectronic properties including the long carrier diffusion length, high carrier mobility, low trap density, and tunable absorption edge ranging from ultra-violet (UV) to near-infrared (NIR), which offer potential for applications in solar cells, photodetectors (PDs), lasers, etc. In this review, we summarized the synthesis, properties, and applications of organic-inorganic mixed and all-inorganic perovskite single crystals, particularly through the solution synthesis approach. Challenges towards the crystal growth and stability with future perspectives were also briefly described at the end of this manuscript.

近年来,钙钛矿单晶由于其易于合成和优异的光电性能,包括长载流子扩散长度、高载流子迁移率、低陷阱密度以及从紫外线(UV)到近红外(NIR)可调的吸收边缘,在太阳能电池、光电探测器(pd)、激光器等方面具有潜在的应用前景,受到了广泛的关注。本文综述了有机-无机混合和全无机钙钛矿单晶的合成、性质和应用,特别是溶液合成方法。对晶体生长和稳定性的挑战与未来的观点也简要地描述了在这个手稿的最后。
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引用次数: 30
Bioinformatics analysis on lncRNA and mRNA expression profiles for novel biological features of valvular heart disease with atrial fibrillation 心瓣膜病合并房颤的lncRNA和mRNA表达谱的生物信息学分析
Q1 Engineering Pub Date : 2021-03-01 DOI: 10.1016/j.jnlest.2020.100058
Wei Zeng , Ni-Ni Rao , Ke Liu

The biological features of the valvular heart disease with atrial fibrillation (AF-VHD) remain unknown when involving long non-coding RNAs (lncRNAs). This study performed system analysis on lncRNA and messenger RNA (mRNA) expression profiles constructed by using bioinformatics methods and tools for biological features of AF-VHD. Fold change and t-test were used to identify differentially expressed (DE) lncRNAs and mRNAs. The enrichment analysis of DE mRNAs was performed. The subgroups formed by lncRNAs and nearby mRNAs were screened, and a transcriptional regulation network among lncRNAs, mRNAs, and transcription factors (TFs) was constructed. The interactions between mRNAs related to lncRNAs and drugs were predicted. The 620 AF-VHD-related DE lncRNAs and 452 DE mRNAs were identified. The 3 lncRNA subgroups were screened. The 665 regulations mediated by lncRNAs and TFs were identified. The 9 mRNAs related to lncRNAs had 1 or more potential drug interactions, totaling 37 drugs. Of these, 9 drugs targeting 3 genes are already known to be able to control or trigger atrial fibrillation (AF) or other cardiac arrhythmias. The found biological features of AF-VHD provide foundations for further biological experiments to better understand the roles of lncRNAs in development from the valvular heart disease (VHD) to AF-VHD.

当涉及长链非编码rna (lncRNAs)时,瓣膜性心脏病合并心房颤动(AF-VHD)的生物学特征尚不清楚。本研究利用生物信息学方法和工具构建了AF-VHD的lncRNA和信使RNA (mRNA)表达谱,对其进行了系统分析。采用Fold change和t检验鉴定差异表达(DE) lncrna和mrna。进行DE mrna富集分析。筛选lncRNAs及其附近mrna组成的亚群,构建lncRNAs、mrna和转录因子(transcription factors, tf)之间的转录调控网络。预测lncRNAs相关mrna与药物的相互作用。鉴定出620个af - vhd相关DE lncrna和452个DE mrna。筛选3个lncRNA亚组。鉴定了lncrna和tf介导的665个调控。与lncRNAs相关的9种mrna具有1种或1种以上的潜在药物相互作用,共计37种药物。其中,已知有9种靶向3个基因的药物能够控制或触发心房颤动(AF)或其他心律失常。发现AF-VHD的生物学特征,为进一步开展生物学实验,更好地了解lncrna在瓣膜性心脏病(VHD)向AF-VHD发展过程中的作用提供了基础。
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引用次数: 1
Nonlinearity-compensation-free optical frequency domain reflectometry based on electrically-controlled optical frequency sweep 基于电控扫频的非线性无补偿光频域反射计
Q1 Engineering Pub Date : 2021-03-01 DOI: 10.1016/j.jnlest.2020.100025
Fan Yang, Ling-Jie Zhang, Zhi-Yao Zhang, Xiao-Jun Zhou, Yong Liu

A nonlinearity-compensation-free optical frequency domain reflectometry (OFDR) scheme is proposed and experimentally demonstrated based on the electrically-controlled optical frequency sweep. In the proposed scheme, the linear frequency sweep light is generated by propagating an ultra-narrow-linewidth continuous-wave (CW) light through an electro-optic frequency shifter which consists of a dual-parallel Mach-Zehnder modulator (DPMZM) and an electronic 90° hybrid, where the electro-optic frequency shifter is driven by a linear frequency modulated signal generated by a direct digital synthesizer (DDS). Experimental results show that the spatial resolution and signal-to-noise ratio (SNR) of the proposed OFDR scheme without the nonlinear phase compensation are comparable to those of OFDR employing a commercial tunable laser source (TLS), an auxiliary interferometer, and a software-based nonlinear phase compensation method. The proposed OFDR scheme is helpful to reduce the complexity of the optical structure and eliminate the difficulty of developing the nonlinear phase compensation algorithm.

提出了一种基于电控光扫频的非线性无补偿光频域反射方案,并进行了实验验证。在所提出的方案中,线性扫频光是由超窄线宽连续波(CW)光通过由双平行马赫-曾德尔调制器(DPMZM)和电子90°混合器组成的电光移频器产生的,其中电光移频器由直接数字合成器(DDS)产生的线性调频信号驱动。实验结果表明,不进行非线性相位补偿的OFDR方案的空间分辨率和信噪比与采用商用可调谐激光源(TLS)、辅助干涉仪和基于软件的非线性相位补偿方法的OFDR方案相当。提出的OFDR方案有助于降低光学结构的复杂性,消除开发非线性相位补偿算法的困难。
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引用次数: 3
Signal acquisition and processing method for capacitive electromagnetic flowmeter 电容式电磁流量计的信号采集与处理方法
Q1 Engineering Pub Date : 2021-03-01 DOI: 10.1016/j.jnlest.2020.100026
Hong-Yu Yang , Yan Chen , Hui Zhao

A kind of signal acquisition circuit and the related signal processing method of the capacitance electromagnetic flowmeter were introduced. The circuit can eliminate the influence of distributed capacitance on the input impedance of the operational amplifier, and greatly improve the input impedance of the detection circuit to overcome the disadvantage of high signal source impedance. The rotating capacitor filter is a signal processing method based on the phase-sensitive detection technology. It can extract the weak signal from the strong and wide-band background noise, so it is very suitable for the processing of capacitive electromagnetic flow signals. Through the comparison of the signal amplitude obtained at different flow rates and the comparison of signal spectrum components before and after the filter, the effectiveness of the bootstrap signal acquisition circuit and rotating capacitor filtering method is verified.

介绍了电容式电磁流量计的一种信号采集电路及相应的信号处理方法。该电路可以消除分布电容对运放输入阻抗的影响,大大提高检测电路的输入阻抗,克服信号源阻抗高的缺点。旋转电容滤波是一种基于相敏检测技术的信号处理方法。它能从强的、宽的背景噪声中提取出微弱的信号,因此非常适合于处理电容式电磁流量信号。通过对不同流量下得到的信号幅值的比较以及滤波前后信号频谱成分的比较,验证了自举信号采集电路和旋转电容滤波方法的有效性。
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引用次数: 3
Impact of coronavirus pandemic crisis on technologies and cloud computing applications 冠状病毒大流行危机对技术和云计算应用的影响
Q1 Engineering Pub Date : 2021-03-01 DOI: 10.1016/j.jnlest.2020.100059
Ziyad R. Alashhab , Mohammed Anbar , Manmeet Mahinderjit Singh , Yu-Beng Leau , Zaher Ali Al-Sai , Sami Abu Alhayja’a

In light of the COVID-19 outbreak caused by the novel coronavirus, companies and institutions have instructed their employees to work from home as a precautionary measure to reduce the risk of contagion. Employees, however, have been exposed to different security risks because of working from home. Moreover, the rapid global spread of COVID-19 has increased the volume of data generated from various sources. Working from home depends mainly on cloud computing (CC) applications that help employees to efficiently accomplish their tasks. The cloud computing environment (CCE) is an unsung hero in the COVID-19 pandemic crisis. It consists of the fast-paced practices for services that reflect the trend of rapidly deployable applications for maintaining data. Despite the increase in the use of CC applications, there is an ongoing research challenge in the domains of CCE concerning data, guaranteeing security, and the availability of CC applications. This paper, to the best of our knowledge, is the first paper that thoroughly explains the impact of the COVID-19 pandemic on CCE. Additionally, this paper also highlights the security risks of working from home during the COVID-19 pandemic.

针对新型冠状病毒感染症(COVID-19)的新冠肺炎疫情,企业和机构为降低感染风险,采取了在家办公的预防措施。然而,由于在家工作,员工面临着不同的安全风险。此外,COVID-19在全球的迅速传播增加了各种来源产生的数据量。在家办公主要依赖于云计算(CC)应用程序,这些应用程序帮助员工高效地完成任务。云计算环境(CCE)是COVID-19大流行危机中的无名英雄。它由快节奏的服务实践组成,反映了用于维护数据的快速部署应用程序的趋势。尽管CC应用程序的使用在增加,但在CCE领域,关于数据、保证安全性和CC应用程序的可用性,仍存在持续的研究挑战。据我们所知,这篇论文是第一篇全面解释COVID-19大流行对CCE影响的论文。此外,本文还强调了2019冠状病毒病大流行期间在家工作的安全风险。
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引用次数: 61
Annotation of miRNAs in COVID-19 coronavirus COVID-19冠状病毒mirna的注释
Q1 Engineering Pub Date : 2021-03-01 DOI: 10.1016/j.jnlest.2020.100060
Tie-Ying Yu , Min Chen , Chun-De Wang

The COVID-19 coronavirus is a new strain of coronavirus that had not been previously detected in humans. As its severe pathogenicity is concerned, it is important to study it thoroughly to aid in the discovery of a cure. In this study, the microRNAs (miRNAs) of COVID-19 were annotated to provide a powerful tool for the study of this novel coronavirus. We obtained 16 novel coronavirus genome sequences and the mature sequences of all viruses in the microRNA database (miRbase), and then used the miRNA mature sequences of the virus to perform the Basic Local Alignment Search Tool (BLAST) analysis in the coronavirus genome, extending the matched regions of approximately 20 bp to two segments by 200 bp. Six sequences were obtained after deleting redundant sequences. Then, the hairpin structures of the mature miRNAs were determined using RNAfold. The mature sequence on one hairpin arm was selected into a total of 4 sequences, and finally the relevant miRNA precursor prediction tools were used to verify whether the selected sequences are miRNA precursor sequences of the novel coronavirus. The miRNAs of the novel coronavirus were annotated by our newly developed method, which will lay the foundation for further study of this virus.

COVID-19冠状病毒是一种以前未在人类中发现的新型冠状病毒。由于其严重的致病性,对其进行彻底的研究以帮助发现治疗方法是很重要的。本研究对COVID-19的microRNAs (miRNAs)进行了注释,为研究这种新型冠状病毒提供了有力的工具。我们从microRNA数据库(miRbase)中获得了16个新型冠状病毒基因组序列和所有病毒的成熟序列,然后利用该病毒的miRNA成熟序列在冠状病毒基因组中进行基本局部比对搜索工具(BLAST)分析,将大约20 bp的匹配区域扩展到两个片段200 bp。删除冗余序列后得到6个序列。然后,利用RNAfold测定成熟mirna的发夹结构。选取一个发夹臂上的成熟序列共4个序列,最后利用相关的miRNA前体预测工具验证所选序列是否为新型冠状病毒的miRNA前体序列。利用新方法对新型冠状病毒的mirna进行了注释,为进一步研究该病毒奠定了基础。
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引用次数: 13
Image classification with superpixels and feature fusion method 超像素图像分类与特征融合方法
Q1 Engineering Pub Date : 2021-03-01 DOI: 10.1016/j.jnlest.2021.100096
Feng Yang, Zheng Ma, Mei Xie

This paper presents an effective image classification algorithm based on superpixels and feature fusion. Differing from classical image classification algorithms that extract feature descriptors directly from the original image, the proposed method first segments the input image into superpixels and, then, several different types of features are calculated according to these superpixels. To increase classification accuracy, the dimensions of these features are reduced using the principal component analysis (PCA) algorithm followed by a weighted serial feature fusion strategy. After constructing a coding dictionary using the nonnegative matrix factorization (NMF) algorithm, the input image is recognized by a support vector machine model. The effectiveness of the proposed method was tested on the public Scene-15, Caltech-101, and Caltech-256 datasets, and the experimental results demonstrate that the proposed method can effectively improve image classification accuracy.

提出了一种基于超像素和特征融合的有效图像分类算法。与直接从原始图像中提取特征描述符的经典图像分类算法不同,该方法首先将输入图像分割成超像素,然后根据这些超像素计算几种不同类型的特征。为了提高分类精度,使用主成分分析(PCA)算法降低这些特征的维数,然后采用加权序列特征融合策略。利用非负矩阵分解(NMF)算法构造编码字典后,利用支持向量机模型对输入图像进行识别。在公开的Scene-15、Caltech-101和Caltech-256数据集上对所提方法的有效性进行了测试,实验结果表明,所提方法能有效提高图像分类精度。
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引用次数: 15
Molecules against Covid-19: An in silico approach for drug development 抗Covid-19分子:一种用于药物开发的计算机方法
Q1 Engineering Pub Date : 2021-03-01 DOI: 10.1016/j.jnlest.2021.100095
Rhythm Bharti , Sandeep Kumar Shukla

A large number of deaths have been caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) worldwide, turning it into a serious and momentous threat to public health. This study tends to contribute to the development of effective treatment strategies through a computational approach, investigating the mechanisms in relation to the binding and subsequent inhibition of SARS-CoV-2 ribonucleic acid (RNA)-dependent RNA polymerase (RdRp). Molecular docking was performed to screen six naturally occurring molecules with antineoplastic properties (Ellipticine, Ecteinascidin, Homoharringtonine, Dolastatin 10, Halichondrin, and Plicamycin). Absorption, distribution, metabolism, and excretion (ADME) investigation was also conducted to analyze the drug-like properties of these compounds. The docked results have clearly shown binding of ligands to the SARS-CoV-2 RdRp protein. Interestingly, all ligands were found to obey Lipinski’s rule of five. These results provide a basis for repurposing and using molecules, derived from plants and animals, as a potential treatment for the coronavirus disease 2019 (COVID-19) infection as they could be effective therapeutics for the same.

严重急性呼吸系统综合征冠状病毒2 (SARS-CoV-2)在全球造成大量死亡,成为对公共卫生的严重威胁。本研究旨在通过计算方法研究SARS-CoV-2核糖核酸(RNA)依赖性RNA聚合酶(RdRp)结合和随后抑制的相关机制,从而有助于开发有效的治疗策略。通过分子对接筛选6种具有抗肿瘤特性的天然分子(Ellipticine, Ecteinascidin, homharringtonine, Dolastatin 10, Halichondrin和Plicamycin)。并进行了吸收、分布、代谢和排泄(ADME)研究,分析了这些化合物的药物样性质。对接结果清楚地显示配体与SARS-CoV-2 RdRp蛋白结合。有趣的是,所有的配体都遵循利平斯基的五法则。这些结果为重新利用和使用来自植物和动物的分子作为2019冠状病毒病(COVID-19)感染的潜在治疗方法提供了基础,因为它们可能是有效的治疗方法。
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引用次数: 11
Identification of the potential function of circRNA in hypertrophic cardiomyopathy based on mutual RNA-RNA and RNA-RBP relationships shown by microarray data 基于微阵列数据显示的RNA-RNA和RNA-RBP相互关系鉴定circRNA在肥厚型心肌病中的潜在功能
Q1 Engineering Pub Date : 2021-03-01 DOI: 10.1016/j.jnlest.2021.100097
Guang-Bin Wang , Ni-Ni Rao , Chang-Long Dong , Xiao-Qin Lyu

The pathogenesis of hypertrophic cardiomyopathy (HCM) is very complicated, particularly regarding the role of circular RNA (circRNA). This research pays special attention to the relationships of the circRNA-mediated network, including RNA-RNA relationships and RNA-RNA binding protein (RNA-RBP) relationships. We use the parameter framework technology proposed in this paper to screen differentially expressed circRNA, messenger RNA (mRNA), and microRNA (miRNA) from the expression profile of samples related to HCM. And 31 pairs of circRNA and mRNA relationship pairs were extracted, combined with the miRNA targeting database; 145 miRNA-mRNA relationship pairs were extracted; 268 circRNA-mRNA-miRNA triads were established through the common mRNA in the 2 types of relationship pairs. Thus, 268 circRNA-miRNA regulatory relationships were deduced and 30 circRNA-RBP relationship pairs were analyzed at the protein level. On this basis, a circRNA-mediated regulatory network corresponding to the two levels of RNA-RNA and RNA-RBP was established. And then the roles of circRNA in HCM were analyzed through circRNA-mRNA, circRNA-miRNA, and circRNA-RBP, and the possible role in disease development was inferred.

肥厚性心肌病(HCM)的发病机制非常复杂,特别是关于环状RNA (circRNA)的作用。本研究特别关注环状rna介导的网络关系,包括RNA-RNA关系和RNA-RNA结合蛋白(RNA-RBP)关系。我们使用本文提出的参数框架技术从HCM相关样本的表达谱中筛选差异表达的circRNA、信使RNA (mRNA)和microRNA (miRNA)。并提取31对circRNA与mRNA的关系对,结合miRNA靶向数据库;提取145对miRNA-mRNA关系对;通过2类关系对中的共同mRNA,建立了268个circRNA-mRNA-miRNA三联体。因此,我们推导出268对circRNA-miRNA调控关系,并在蛋白水平上分析了30对circRNA-RBP关系。在此基础上,建立了circrna介导的RNA-RNA和RNA-RBP两个水平对应的调控网络。然后通过circRNA- mrna、circRNA- mirna、circRNA- rbp分析circRNA在HCM中的作用,推断其在疾病发展中的可能作用。
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引用次数: 0
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