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Stack Ensemble Oriented Parkinson Disease Prediction Using Machine Learning Approaches Utilizing GridSearchCV-Based Hyper Parameter Tuning. 利用基于gridsearchcv的超参数调优的机器学习方法的堆栈集成导向帕金森病预测。
Q3 Engineering Pub Date : 2022-01-01 DOI: 10.1615/CritRevBiomedEng.2022044813
Naaima Suroor, Arunima Jaiswal, Nitin Sachdeva

Since the coronavirus came into existence and brought the entire world to a standstill, there have been drastic changes in people's lives that continue to affect them even as the pandemic recedes. The isolation reduced physical activity and hindered access to non-COVID related healthcare during lockdown and the ensuing months brought increased attention to mental health and the neurological disorders that might have been exacerbated. One nervous system disorder that affects the elderly and needs better awareness is Parkinson's disease. We have machine learning and a growing number of deep learning models to predict, and detect its onset; their scope is not completely exhaustive and can still be optimized. In this research, the authors highlight techniques that have been implemented in recent years for prediction of the disease. Models based on the less redundantly used classifiers-naive Bayes, logistic regression, linear-support vector machine, kernelizing support vector machine, and multilayer perceptron-are initially implemented and compared. Based on limitations of the results, an ensemble stack model of hyper-tuned versions using GridSearchCV out of the top performing supervised classifiers along-with extreme gradient boosting classifier is implemented to further improve overall results. In addition, a convolutional neural network-based model is also implemented, and the results are analyzed using two epoch values to compare the performance of deep learning models. The benchmark datasets-UCI Parkinson's data and the spiral and wave datasets-have been used for machine and deep learning respectively. Performance metrics like accuracy, precision, recall, support, and F1 score are utilized, and confusion matrices and graphs are plotted for visualization. 94.87% accuracy was achieved using the stacking approach.

自冠状病毒出现并使整个世界陷入停滞以来,人们的生活发生了巨大变化,即使大流行消退,这些变化仍在影响着他们。在封锁期间,隔离减少了身体活动,阻碍了获得与covid无关的医疗服务,随后的几个月,人们更加关注可能加剧的精神健康和神经系统疾病。帕金森氏症是一种影响老年人的神经系统疾病,需要更好地认识。我们有机器学习和越来越多的深度学习模型来预测和检测它的发作;它们的范围不是完全详尽的,仍然可以优化。在这项研究中,作者强调了近年来用于预测该疾病的技术。基于较少冗余使用分类器的模型-朴素贝叶斯,逻辑回归,线性支持向量机,核化支持向量机和多层感知器-初步实现和比较。基于结果的局限性,利用性能最好的监督分类器中的GridSearchCV和极端梯度增强分类器实现了超调版本的集成堆栈模型,以进一步提高整体结果。此外,还实现了一个基于卷积神经网络的模型,并使用两个历元值对结果进行了分析,以比较深度学习模型的性能。基准数据集- uci帕金森氏症数据和螺旋和波浪数据集-已分别用于机器和深度学习。使用了准确性、精度、召回率、支持度和F1分数等性能指标,并绘制了混淆矩阵和图形以实现可视化。采用叠加法,准确率达到94.87%。
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引用次数: 0
Lung Cancer Detection Using Machine Learning Techniques. 使用机器学习技术检测肺癌。
Q3 Engineering Pub Date : 2022-01-01
Fayeza Sifat Fatima, Arunima Jaiswal, Nitin Sachdeva

Cancer has been the deadliest of diseases since decades constituting a large number of deaths annually. Lung cancer remains one of the most significant public health issues, accounting for a substantial proportion of cancer-related deaths globally. Despite ongoing efforts to curb the instances of lung cancer, India continues to see a high number of new diagnoses each year, estimated to be 70,000. Early detection of lung cancer can be difficult due to its asymptomatic nature in its initial stages. However, advancements in technology have given rise to computer-aided diagnostic systems to help overcome this challenge. These systems employ a variety of techniques, such as machine learning, deep learning, image analysis, and text mining, to accurately determine the presence of lung cancer. In an effort to create a more advanced model for lung cancer diagnosis, this study proposes the integration of machine learning algorithms, ensemble learning techniques, and particle swarm optimization to assess the outcomes. The results of the study suggest that the ensemble learning approach outperforms traditional machine learning techniques in terms of accuracy.

几十年来,癌症一直是最致命的疾病,每年造成大量死亡。肺癌仍然是最重要的公共卫生问题之一,在全球癌症相关死亡中占很大比例。尽管一直在努力控制肺癌病例,但印度每年仍有大量新诊断病例,估计有7万例。早期发现肺癌可能是困难的,因为它在初期无症状的性质。然而,技术的进步已经产生了计算机辅助诊断系统,以帮助克服这一挑战。这些系统采用各种技术,如机器学习、深度学习、图像分析和文本挖掘,以准确确定肺癌的存在。为了创建一个更先进的肺癌诊断模型,本研究提出了机器学习算法、集成学习技术和粒子群优化的集成来评估结果。研究结果表明,集成学习方法在准确性方面优于传统的机器学习技术。
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引用次数: 0
Challenges and Solutions in Automated Tongue Diagnosis Techniques: A Review. 舌部自动诊断技术的挑战与解决方法综述。
Q3 Engineering Pub Date : 2022-01-01 DOI: 10.1615/CritRevBiomedEng.2022044392
Vibha Bhatnagar, Prashant P Bansod

Tongue diagnosis is used in various traditional medicine cultures as a non-invasive method for assessing an individual's health. Tongue image analysis has the potential for assessing the metabolism and functionality of the internal organs, making it a quick method of diagnosis. As automated systems give quantitative and objective results thereby effective in facilitating diagnosis, a review was conducted to evaluate literature on current methods of tongue diagnosis. Different methods of tongue diagnosis in the literature were identified and compared. Information on automated tongue diagnosis system, such as image acquisition, color correction, segmentation, feature extraction and classification, particularly in traditional medicine were reviewed. The aim of the review was to identify effective image processing techniques to be compatible with automated system for tongue diagnosis using some easily available to all imaging device rather than a dedicated state of art acquisition systems, which may not be easily accessible to general public. All methods identified were either being researched or developed and no specific system was identified that is currently available for routine use in clinics or home monitoring for patients. The healthcare sector could benefit from access to validated and automated tongue diagnosis systems. The feasibility of a mobile enabled platform to intelligently make use of this traditional method of diagnosis should be explored. In order to provide cheap and quick preliminary diagnosis for clinical practice automation of this noninvasive traditional technique can prove to be a boon for health care sector.

在各种传统医学文化中,舌头诊断是一种评估个人健康的非侵入性方法。舌头图像分析具有评估内部器官代谢和功能的潜力,使其成为一种快速的诊断方法。由于自动化系统给出了定量和客观的结果,从而有效地促进了诊断,因此对当前舌头诊断方法的文献进行了综述。对文献中不同的舌诊方法进行了鉴定和比较。本文综述了近年来在图像采集、色彩校正、图像分割、特征提取和分类等方面的研究进展,特别是在传统医学领域。本研究的目的是找出有效的图像处理技术,以配合自动化的舌头诊断系统,使用一些容易获得的成像设备,而不是一个专门的最先进的采集系统,这可能不容易为公众所使用。所确定的所有方法都正在研究或开发中,没有确定目前可用于诊所或家庭患者监测的常规系统。医疗保健部门可以从获得经过验证的自动化舌头诊断系统中受益。应该探索移动平台智能利用这种传统诊断方法的可行性。为了给临床实践提供廉价、快速的初步诊断,这种无创的传统技术的自动化可以被证明是医疗保健部门的福音。
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引用次数: 2
Preface: International Conference on Advancements in Interdisciplinary Research (AIR-2022). 前言:国际跨学科研究进展会议(AIR-2022)。
Q3 Engineering Pub Date : 2022-01-01 DOI: 10.1615/CritRevBiomedEng.v50.i1.10
Dharmendra Tripathi, Abhishek Kumar Tiwari, Ashutosh Mishra
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引用次数: 0
Three-Dimensional Bioprinting of Organs: Modern Trends. 器官三维生物打印:现代趋势。
Q3 Engineering Pub Date : 2022-01-01 DOI: 10.1615/CritRevBiomedEng.2022043734
Iftikhar B Abbasov

The paper presents an overview of some modern technologies for three-dimensional (3D) bioprinting of human tissues and organs. 3D bioprinting of human organs is increasingly used for the production and transplantation of artificial biological organs. Existing technologies of 3D bioprinting using bioink on a special substrate are considered. The features of the production of bioinks using biocompatible polymer compounds, hydrogels are given, some popular modern bioprinters are noted. Modern technologies of bioprinting of tissues of human organs are considered: skin, liver, lungs, heart, brain, existing technological problems in this area are given. Based on the analysis, the future prospects for the development of bioprinting technology for human organs are noted.

本文综述了人体组织和器官三维生物打印的一些现代技术。人体器官的生物3D打印越来越多地用于人造生物器官的制作和移植。考虑了在特殊衬底上使用生物墨水的现有3D生物打印技术。介绍了生物相容性高分子化合物、水凝胶制备生物墨水的特点,并介绍了几种流行的现代生物打印机。介绍了人体器官组织生物打印的现代技术:皮肤、肝脏、肺、心脏、大脑,并给出了该领域存在的技术问题。在此基础上,展望了人体器官生物打印技术的发展前景。
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引用次数: 1
Optimized Deep Learning for the Classification of Parkinson's Disease Based on Voice Features. 基于语音特征的帕金森病分类的优化深度学习。
Q3 Engineering Pub Date : 2022-01-01 DOI: 10.1615/CritRevBiomedEng.2022041442
S Sharanyaa, Sambath M, P N Renjith

Parkinson's disease (PD) is a neurodegenerative disorder. Hence, there is a tremendous demand for adapting vocal features to determine PD in an earlier stage. This paper devises a technique to diagnose PD using voice signals. Initially, the voice signals are considered an input. The signal is fed to pre-processing wherein the filtering is adapted to remove noise. Thereafter, feature extraction is done that includes fluctuation index, spectral flux, spectral centroid, Mel frequency Cepstral coefficient (MFCC), spectral spread, tonal power ratio, spectral kurtosis and the proposed Exponential delta-Amplitude modulation signal (delta-AMS). Here, exponential delta-amplitude modulation spectrogram (Exponential-delta AMS) is devised by combining delta-amplitude modulation spectrogram (delta-AMS) and exponential weighted moving average (EWMA). The feature selection is done considering the extracted features using the proposed squirrel search water algorithm (SSWA), which is devised by combining Squirrel search algorithm (SSA) and water cycle algorithm (WCA). The fitness is newly devised considering Canberra distance. Finally, selected features are fed to attention-based long short-term memory (attention-based LSTM) in order to identify the existence of PD. Here, the training of attention-based LSTM is performed with developed SSWA. The proposed SSWA-based attention-based LSTM offered enhanced performance with 92.5% accuracy, 95.4% sensitivity and 91.4% specificity.

帕金森病(PD)是一种神经退行性疾病。因此,有巨大的需求适应声音特征,以确定PD的早期阶段。本文设计了一种利用语音信号诊断PD的方法。最初,语音信号被视为输入。将所述信号馈送至预处理,其中所述滤波适于去除噪声。然后,提取包括波动指数、谱通量、谱质心、Mel频退系数(MFCC)、谱展、音调功率比、谱峰度和提出的指数δ -振幅调制信号(delta-AMS)的特征。本文将δ振幅调制谱图(delta-AMS)与指数加权移动平均(EWMA)相结合,设计了指数δ振幅调制谱图(exponential -delta AMS)。结合松鼠搜索算法(SSA)和水循环算法(WCA)设计的松鼠搜索水算法(SSWA),根据提取的特征进行特征选择。考虑到堪培拉的距离,健身是新设计的。最后,将选择的特征输入到基于注意的长短期记忆(attention-based LSTM)中,以识别PD的存在。在这里,基于注意的LSTM的训练是使用发达的SSWA进行的。基于sswa的LSTM的准确率为92.5%,灵敏度为95.4%,特异性为91.4%。
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引用次数: 0
Atypical Radicular Anatomy in Permanent Human Teeth: A Systematic Review. 人类恒牙非典型神经根解剖:系统综述。
Q3 Engineering Pub Date : 2022-01-01 DOI: 10.1615/CritRevBiomedEng.2022043742
Javier Nino-Barrera, Diana Alzate-Mendoza, Carolina Olaya-Abril, Luis Fernando Gamboa-Martinez, Mishell Guamán-Laverde, Nathaly Lagos-Rosero, Andrea Carolina Romero-Diaz, Nayarid Duran, Lina Vanegas-Hoyose

The aim of the present study is to classify and quantify the anatomical variations of teeth in terms of form and number of root canals reported in human teeth employing the classification systems proposed previously. An electronic (PubMed) and manual search were performed to identify case reports noting any of the anatomical variations. Each alteration was studied independently. The electronic search was performed using the following keywords: anatomical aberration, root canal, permanent Dentition, case report, c-shaped canal, dens invaginatus, palato-radicular groove, palato-radicular groove, palato-gingival groove, radix entomolaris, dental fusion, dental gemination, taurodontism, dilaceration. The initial search revealed 1497 papers, of which 938 were excluded after analyzing the titles and abstracts. Therefore, 559 potential papers were considered. Of those, 140 articles did not meet the inclusion criteria. For the final revision, 419 papers were considered. We found that the mandibular first premolar had the highest prevalence of C-shaped canals. Dens invaginatus was more frequently found in the mandibular lateral incisor. Taurodontism was more prevalent in the maxillary first molar and in the mandibular first molar. Dilaceration was not clearly associated with a particular tooth. The classifications systems used in this review allowed for the better understanding and analysis of the many anatomical variations present in teeth. The variations in shape most found were dens invaginatus and radix entomolaris. The most frequently reported anatomical variation was in the number of canals.

本研究的目的是根据先前提出的分类系统,对人类牙齿中根管的形式和数量进行分类和量化。通过电子检索(PubMed)和手工检索来识别注意到任何解剖变异的病例报告。每个变化都是独立研究的。电子检索的关键词为:解剖畸变、根管、恒牙列、病例报告、c形根管、牙槽内陷、腭根沟、腭龈沟、虫根根、牙融合、牙突、牛牙症、扩张。最初的检索结果是1497篇论文,在分析题目和摘要后,排除了其中的938篇。因此,我们考虑了559篇潜在的论文。其中,140篇文章不符合纳入标准。在最终的修订中,共考虑了419篇论文。我们发现下颌第一前磨牙的c形管发生率最高。内凹齿多见于下颌侧切牙。上颌第一磨牙和下颌第一磨牙多为牛牙畸形。扩张与某一特定牙齿没有明确的联系。本综述中使用的分类系统可以更好地理解和分析牙齿中存在的许多解剖变异。在形状上的变异最多的是凹窝和虫根。最常见的解剖变异是管的数量。
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引用次数: 0
A Review of In Vitro Instrumentation Platforms for Evaluating Thermal Therapies in Experimental Cell Culture Models. 热疗实验细胞培养模型体外检测平台综述
Q3 Engineering Pub Date : 2022-01-01 DOI: 10.1615/CritRevBiomedEng.2022043455
Faraz Chamani, India Barnett, Marla Pyle, Tej Shrestha, Punit Prakash

Thermal therapies, the modulation of tissue temperature for therapeutic benefit, are in clinical use as adjuvant or stand-alone therapeutic modalities for a range of indications, and are under investigation for others. During delivery of thermal therapy in the clinic and in experimental settings, monitoring and control of spatio-temporal thermal profiles contributes to an increased likelihood of inducing desired bioeffects. In vitro thermal dosimetry studies have provided a strong basis for characterizing biological responses of cells to heat. To perform an accurate in vitro thermal analysis, a sample needs to be subjected to uniform heating, ideally raised from, and returned to, baseline immediately, for a known heating duration under ideal isothermal condition. This review presents an applications-based overview of in vitro heating instrumentation platforms. A variety of different approaches are surveyed, including external heating sources (i.e., CO2 incubators, circulating water baths, microheaters and microfluidic devices), microwave dielectric heating, lasers or the use of sound waves. We discuss critical heating parameters including temperature ramp rate (heat-up phase period), heating accuracy, complexity, peak temperature, and technical limitations of each heating modality.

热疗法,调节组织温度以获得治疗效果,在临床上作为辅助或独立治疗方式用于一系列适应症,并且正在研究其他治疗方法。在临床和实验环境中提供热疗法期间,监测和控制时空热分布有助于增加诱导所需生物效应的可能性。体外热剂量学研究为表征细胞对热的生物反应提供了强有力的基础。为了进行准确的体外热分析,样品需要均匀加热,理想情况下,在理想等温条件下,在已知的加热时间内,从基线上升并立即返回到基线。本文综述了体外加热仪器平台的应用概况。调查了各种不同的方法,包括外部热源(即CO2培养箱、循环水浴、微加热器和微流体装置)、微波电介质加热、激光或声波的使用。我们讨论了关键的加热参数,包括温度斜坡率(加热阶段),加热精度,复杂性,峰值温度,以及每种加热方式的技术限制。
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引用次数: 1
A Fetal ECG Extraction Method Based on ELM Optimized by Improved PSO Algorithm. 基于改进粒子群算法优化的ELM胎儿心电提取方法。
Q3 Engineering Pub Date : 2022-01-01 DOI: 10.1615/CritRevBiomedEng.2022044778
Jiqin Chen, Fenglin Cao, Ping Gao

The extraction of fetal electrocardiogram (FECG) is of great significance for perinatal fetal monitoring. In order to improve the prediction accuracy of FECG, a FECG extraction method based on extreme learning machine (ELM) optimized by an improved particle swarm optimization (IPSO) was proposed (IPSO-ELM). First, according to the characteristics of the mixed signal on the maternal abdominal wall, and based on the global search ability of IPSO, the initial weight matrix and hidden layer bias of ELM were optimized to match with the mixed signal of the maternal abdominal wall and the network topology. Then, an ELM model was established using the optimal network parameters obtained by IPSO. The nonlinear transformation of the maternal ECG (MECG) signal to the abdominal wall was estimated by the IPSO-ELM network. Finally, the non-linearly transformed MECG signal was mixed with the abdominal wall subtract to obtain clear FECG. The experimental results of clinical ECG signals in DaISy dataset showed that, compared with the traditional normalized minimum mean square error, support vector machine method, and ELM neural network methods, the proposed method can extract clearer FECG signals and improve the signal-to-noise ratio of extracted FECG.

胎儿心电图的提取对围产期胎儿监护具有重要意义。为了提高FECG的预测精度,提出了一种基于改进粒子群算法优化的极限学习机(IPSO-ELM)的FECG提取方法。首先,根据产妇腹壁混合信号的特点,基于IPSO的全局搜索能力,优化ELM的初始权重矩阵和隐层偏差,使其与产妇腹壁混合信号和网络拓扑匹配;然后,利用IPSO算法得到的最优网络参数,建立了ELM模型。利用IPSO-ELM网络估计母体心电信号向腹壁的非线性变换。最后,将非线性变换后的MECG信号与腹壁减影混合,得到清晰的FECG。DaISy数据集的临床心电信号实验结果表明,与传统的归一化最小均方误差、支持向量机方法、ELM神经网络方法相比,本文方法能够提取出更清晰的心电信号,提高提取的心电信号信噪比。
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引用次数: 0
Detection of Breast Cancer with Lightweight Deep Neural Networks for Histology Image Classification. 基于轻量级深度神经网络的乳腺癌组织图像分类检测。
Q3 Engineering Pub Date : 2022-01-01 DOI: 10.1615/CritRevBiomedEng.2022043417
H S Laxmisagar, M C Hanumantharaju

Many researchers have developed computer-assisted diagnostic (CAD) methods to diagnose breast cancer using histopathology microscopic images. These techniques help to improve the accuracy of biopsy diagnosis with hematoxylin and eosin-stained images. On the other hand, most CAD systems usually rely on inefficient and time-consuming manual feature extraction methods. Using a deep learning (DL) model with convolutional layers, we present a method to extract the most useful pictorial information for breast cancer classification. Breast biopsy images stained with hematoxylin and eosin can be categorized into four groups namely benign lesions, normal tissue, carcinoma in situ, and invasive carcinoma. To correctly classify different types of breast cancer, it is important to classify histopathological images accurately. The MobileNet architecture model is used to obtain high accuracy with less resource utilization. The proposed model is fast, inexpensive, and safe due to which it is suitable for the detection of breast cancer at an early stage. This lightweight deep neural network can be accelerated using field-programmable gate arrays for the detection of breast cancer. DL has been implemented to successfully classify breast cancer. The model uses categorical cross-entropy to learn to give the correct class a high probability and other classes a low probability. It is used in the classification stage of the convolutional neural network (CNN) after the clustering stage, thereby improving the performance of the proposed system. To measure training and validation accuracy, the model was trained on Google Colab for 280 epochs with a powerful GPU with 2496 CUDA cores, 12 GB GDDR5 VRAM, and 12.6 GB RAM. Our results demonstrate that deep CNN with a chi-square test has improved the accuracy of histopathological image classification of breast cancer by greater than 11% compared with other state-of-the-art methods.

许多研究人员开发了计算机辅助诊断(CAD)方法,利用组织病理学显微图像诊断乳腺癌。这些技术有助于提高苏木精和伊红染色图像活检诊断的准确性。另一方面,大多数CAD系统通常依赖于效率低下且耗时的手动特征提取方法。利用卷积层的深度学习(DL)模型,我们提出了一种提取乳腺癌分类中最有用的图像信息的方法。苏木精和伊红染色的乳腺活检图像可分为四组:良性病变、正常组织、原位癌和浸润性癌。为了正确分类不同类型的乳腺癌,对组织病理图像进行准确分类是很重要的。采用MobileNet体系结构模型,以较低的资源利用率获得较高的精度。该模型快速、廉价、安全,适用于早期乳腺癌的检测。这种轻量级的深度神经网络可以使用现场可编程门阵列来加速检测乳腺癌。DL已被用于成功地对乳腺癌进行分类。该模型使用分类交叉熵来学习给正确的类一个高概率,给其他类一个低概率。它被用于卷积神经网络(CNN)在聚类阶段之后的分类阶段,从而提高了所提系统的性能。为了测量训练和验证的准确性,在Google Colab上使用2496个CUDA核、12gb GDDR5 VRAM和12.6 GB RAM的强大GPU对模型进行了280次epoch的训练。我们的研究结果表明,与其他最先进的方法相比,采用卡方检验的深度CNN将乳腺癌组织病理学图像分类的准确率提高了11%以上。
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引用次数: 2
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Critical Reviews in Biomedical Engineering
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