Pub Date : 2022-10-21DOI: 10.1080/14772000.2022.2128928
Daniel Franco-Estrada, E. Ortiz, J. Villaseñor, S. Arias
Ecological niche modelling is useful in estimating the environmental requirements of species and, by extension, can also estimate their distributional areas. For most cacti, ecological niche modelling and comparisons between species have only been performed for a set of variables mainly associated with temperature and precipitation. To expand environmental predictors in addition to climate variables, we use topographic and edaphic variables. The aims of this study were to determine which environmental factors influence the geographical distribution of the P. leucocephalus species group s.s. from Mexico and Central America, to build species distribution models, and to assess whether species have different climatic preferences. Based on ecological niche modelling, the main environmental variables that contribute to the distribution of species and the similarities or differences in ecological niches between species were inferred using Maxent and ENMTools. The results revealed that the studied species had different responses to environmental variables, resulting in a unique combination of conditions for each species, showing only six environmental variables in common. In general, variables with the greatest contributions to the models were climatic, followed by edaphic and topographic variables. The results of the quantification of niches between species showed that there was less than 0.5 overlap in Schoener’s D values, suggesting niche divergence for the group species but in environments more similar than would be expected by random chance. Although species shared affinities for seasonally dry tropical forests, the importance of preferences for different sets of environmental variables by each species was clear. In addition, niche divergence between closely related species of the P. leucocephalus group s.s. is concordant with the previous delimitation at the species level.
{"title":"Species distribution modelling and predictor variables for species distribution and niche preferences of Pilosocereus leucocephalus group s.s. (Cactaceae)","authors":"Daniel Franco-Estrada, E. Ortiz, J. Villaseñor, S. Arias","doi":"10.1080/14772000.2022.2128928","DOIUrl":"https://doi.org/10.1080/14772000.2022.2128928","url":null,"abstract":"Ecological niche modelling is useful in estimating the environmental requirements of species and, by extension, can also estimate their distributional areas. For most cacti, ecological niche modelling and comparisons between species have only been performed for a set of variables mainly associated with temperature and precipitation. To expand environmental predictors in addition to climate variables, we use topographic and edaphic variables. The aims of this study were to determine which environmental factors influence the geographical distribution of the P. leucocephalus species group s.s. from Mexico and Central America, to build species distribution models, and to assess whether species have different climatic preferences. Based on ecological niche modelling, the main environmental variables that contribute to the distribution of species and the similarities or differences in ecological niches between species were inferred using Maxent and ENMTools. The results revealed that the studied species had different responses to environmental variables, resulting in a unique combination of conditions for each species, showing only six environmental variables in common. In general, variables with the greatest contributions to the models were climatic, followed by edaphic and topographic variables. The results of the quantification of niches between species showed that there was less than 0.5 overlap in Schoener’s D values, suggesting niche divergence for the group species but in environments more similar than would be expected by random chance. Although species shared affinities for seasonally dry tropical forests, the importance of preferences for different sets of environmental variables by each species was clear. In addition, niche divergence between closely related species of the P. leucocephalus group s.s. is concordant with the previous delimitation at the species level.","PeriodicalId":54437,"journal":{"name":"Systematics and Biodiversity","volume":" ","pages":"1 - 17"},"PeriodicalIF":1.9,"publicationDate":"2022-10-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42712271","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-10-20DOI: 10.1080/14772000.2022.2127966
M. Á. León-Tapia, Yessica Rico, Jesús A. Fernández, A. Espinosa de los Monteros
Peromyscus is the most speciose genus in America, which occupies almost every terrestrial habitat type. However, its taxonomy and evolutionary relationships remain unsolved in several species, one species group with these issues is the P. boylii complex. This complex consists of 11 species (P. beatae, P. boylii, P. carletoni, P. ensinki, P. greenbaumi, P. kilpatricki, P. levipes, P. madrensis, P. schmidlyi, P. simulus, and P. stephani) largely distributed in Mexico and has been taxonomically studied during the last 40 years, resulting in the description of new species, several of them from the mountains of central Mexico. In this study, we aimed to integrate molecular, morphometric, and spatial data analysis approaches to inquire into the phylogenetic relationships. To clarify the taxonomic status of the P. boylii complex, particularly for the species distributed in the central Mexican highlands where the taxonomic uncertainty is high. We performed phylogenetic and divergence time analyses based on four molecular markers for all species within the complex, we explored cranium shape and size variation in 146 individuals of continental species (P. madrensis and P. stephani excluded) using geometric morphometrics. Also, we evaluated environmental differentiation and ecological niche modeling analyses of three species endemic to the central Mexican highlands to retrieve evidence on their evolutionary history. Our results recovered one well-supported clade including all mountainous species, in which P. schmidlyi was sister to the clade composed of P. greenbaumi and P. ensinki, which diverged during the late Pleistocene. The novel morphological data allowed a better differentiation of all continental species. The discovery of new specimens for P. greenbaumi and P. ensinki improved their taxonomic knowledge, as well as delimiting their habitat and distribution, showing substantial environmental divergence with low overlapped geographical distributions; P. schmidlyi restricted to the Sierra Madre Occidental, P. ensinki to the central-west Trans-Mexican Volcanic Belt, and P. greenbaumi to the center of the Sierra Madre del Sur. We discuss the biogeographic history of these three lineages and the role of the late Pleistocene climatic oscillations on their diversification.
{"title":"Molecular, morphometric, and spatial data analyses provide new insights into the evolutionary history of the Peromyscus boylii species complex (Rodentia: Cricetidae) in the mountains of Mexico","authors":"M. Á. León-Tapia, Yessica Rico, Jesús A. Fernández, A. Espinosa de los Monteros","doi":"10.1080/14772000.2022.2127966","DOIUrl":"https://doi.org/10.1080/14772000.2022.2127966","url":null,"abstract":"Peromyscus is the most speciose genus in America, which occupies almost every terrestrial habitat type. However, its taxonomy and evolutionary relationships remain unsolved in several species, one species group with these issues is the P. boylii complex. This complex consists of 11 species (P. beatae, P. boylii, P. carletoni, P. ensinki, P. greenbaumi, P. kilpatricki, P. levipes, P. madrensis, P. schmidlyi, P. simulus, and P. stephani) largely distributed in Mexico and has been taxonomically studied during the last 40 years, resulting in the description of new species, several of them from the mountains of central Mexico. In this study, we aimed to integrate molecular, morphometric, and spatial data analysis approaches to inquire into the phylogenetic relationships. To clarify the taxonomic status of the P. boylii complex, particularly for the species distributed in the central Mexican highlands where the taxonomic uncertainty is high. We performed phylogenetic and divergence time analyses based on four molecular markers for all species within the complex, we explored cranium shape and size variation in 146 individuals of continental species (P. madrensis and P. stephani excluded) using geometric morphometrics. Also, we evaluated environmental differentiation and ecological niche modeling analyses of three species endemic to the central Mexican highlands to retrieve evidence on their evolutionary history. Our results recovered one well-supported clade including all mountainous species, in which P. schmidlyi was sister to the clade composed of P. greenbaumi and P. ensinki, which diverged during the late Pleistocene. The novel morphological data allowed a better differentiation of all continental species. The discovery of new specimens for P. greenbaumi and P. ensinki improved their taxonomic knowledge, as well as delimiting their habitat and distribution, showing substantial environmental divergence with low overlapped geographical distributions; P. schmidlyi restricted to the Sierra Madre Occidental, P. ensinki to the central-west Trans-Mexican Volcanic Belt, and P. greenbaumi to the center of the Sierra Madre del Sur. We discuss the biogeographic history of these three lineages and the role of the late Pleistocene climatic oscillations on their diversification.","PeriodicalId":54437,"journal":{"name":"Systematics and Biodiversity","volume":"49 5","pages":"1 - 19"},"PeriodicalIF":1.9,"publicationDate":"2022-10-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41257509","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-10-19DOI: 10.1080/14772000.2022.2130464
Antoine Fouquet, Alexandre Réjaud, M. T. Rodrigues, S. Ron, J. C. Chaparro, Mariela Osorno, F. Werneck, T. Hrbek, A. Lima, Teresa Camacho-Badani, Andres F. Jaramillo-Martinez, J. Chave
Determining the relative importance of dispersal and vicariance events across neotropical regions is a major goal in biogeography. These events are thought to be related to important landscape changes, notably the transition of Amazonia toward its modern hydrological configuration ca. 10 million years ago. We investigated the spatio-temporal context of the diversification of one of the major lineages of Pristimantis, a widespread and large genus of direct-developing Neotropical frogs. We gathered a spatially and taxonomically extensive sampling of mitochondrial DNA sequences from 754 Pristimantis gr. conspicillatus specimens, which led to delimiting 75 Operational Taxonomic Units (OTUs). Complete mitogenomes of 35 of these OTUs were assembled and collated with two nuDNA loci to reconstruct a time-calibrated phylogeny. We identified five major clades that diverged around the Oligocene-Miocene transition and that are largely restricted to distinct Neotropical regions i.e. Western Amazonia (P. conspicillatus clade), the Brazilian Shield (P. fenestratus clade), the Atlantic Forest (P. ramagii clade), the Guiana Shield (P. vilarsi clade) and the northern Andes (P. nicefori clade). The majority of the diversification events within these clades occurred in-situ from the early Miocene onward. Yet, a few ancient dispersal/vicariance events are inferred to have occurred among trans-Andean forests, the Atlantic Forest, the Brazilian and the Guiana Shields, but almost none in the last 10 Ma. The radical landscape transformations during the Miocene caused by the Andean orogeny and hydrological barriers such as the Pebas System and the subsequent transcontinental configuration of the Amazon drainage is a likely explanation for the isolation of the different clades within the P. gr. conspicillatus.
确定新热带地区扩散和迁移事件的相对重要性是生物地理学的一个主要目标。这些事件被认为与重要的景观变化有关，特别是大约1000万年前亚马逊河流域向现代水文形态的转变。我们研究了普氏蛙(Pristimantis)主要分支之一的时空多样性背景，普氏蛙是一种广泛分布的直接发育的新热带蛙属。本文对754份刺眼棱镜标本的线粒体DNA序列进行了广泛的空间和分类取样，划分出75个操作分类单元(otu)。对其中35个otu的完整有丝分裂基因组进行组装，并与两个nuDNA位点进行比对，以重建经过时间校准的系统发育。我们确定了在渐新世-中新世过渡期间分化的五个主要分支，这些分支主要局限于不同的新热带地区，即西亚马逊(P. illatus)，巴西盾(P. fenestratus)，大西洋森林(P. ramagii)，圭亚那盾(P. vilarsi)和安第斯山脉北部(P. nicefori)。这些分支中的大部分多样化事件发生在中新世早期以后的原位。然而，据推测，在跨安第斯森林、大西洋森林、巴西森林和圭亚那森林中发生了一些古代的分散/迁移事件，但在过去的10万年里几乎没有发生。中新世期间，安第斯造山运动和水文屏障(如Pebas系统)以及随后的亚马逊流域横贯大陆的构造导致了剧烈的景观变化，这可能是P. gr. illatus内不同分支被隔离的一个解释。
{"title":"Diversification of the Pristimantis conspicillatus group (Anura: Craugastoridae) within distinct neotropical areas throughout the Neogene","authors":"Antoine Fouquet, Alexandre Réjaud, M. T. Rodrigues, S. Ron, J. C. Chaparro, Mariela Osorno, F. Werneck, T. Hrbek, A. Lima, Teresa Camacho-Badani, Andres F. Jaramillo-Martinez, J. Chave","doi":"10.1080/14772000.2022.2130464","DOIUrl":"https://doi.org/10.1080/14772000.2022.2130464","url":null,"abstract":"Determining the relative importance of dispersal and vicariance events across neotropical regions is a major goal in biogeography. These events are thought to be related to important landscape changes, notably the transition of Amazonia toward its modern hydrological configuration ca. 10 million years ago. We investigated the spatio-temporal context of the diversification of one of the major lineages of Pristimantis, a widespread and large genus of direct-developing Neotropical frogs. We gathered a spatially and taxonomically extensive sampling of mitochondrial DNA sequences from 754 Pristimantis gr. conspicillatus specimens, which led to delimiting 75 Operational Taxonomic Units (OTUs). Complete mitogenomes of 35 of these OTUs were assembled and collated with two nuDNA loci to reconstruct a time-calibrated phylogeny. We identified five major clades that diverged around the Oligocene-Miocene transition and that are largely restricted to distinct Neotropical regions i.e. Western Amazonia (P. conspicillatus clade), the Brazilian Shield (P. fenestratus clade), the Atlantic Forest (P. ramagii clade), the Guiana Shield (P. vilarsi clade) and the northern Andes (P. nicefori clade). The majority of the diversification events within these clades occurred in-situ from the early Miocene onward. Yet, a few ancient dispersal/vicariance events are inferred to have occurred among trans-Andean forests, the Atlantic Forest, the Brazilian and the Guiana Shields, but almost none in the last 10 Ma. The radical landscape transformations during the Miocene caused by the Andean orogeny and hydrological barriers such as the Pebas System and the subsequent transcontinental configuration of the Amazon drainage is a likely explanation for the isolation of the different clades within the P. gr. conspicillatus.","PeriodicalId":54437,"journal":{"name":"Systematics and Biodiversity","volume":"20 1","pages":"1 - 16"},"PeriodicalIF":1.9,"publicationDate":"2022-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42506145","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-10-19DOI: 10.1080/14772000.2022.2123865
S. Arroyo, Mariane Targino, L. A. Rueda-Solano, J. Daza, T. Grant
Since the systematics of Terrarana frogs was overhauled in 2008, five new genera have been named, including Tachiramantis from the Venezuelan Coastal Range and adjacent parts of the Cordillera Oriental of Colombia and the Sierra de Perijá along the Venezuela–Colombia border. The discovery of Tachiramantis raises questions about the relationships of several species of Pristimantis in the nearby Sierra Nevada de Santa Marta previously hypothesized to be closely related to species now referred to Tachiramantis. To test the monophyly of Tachiramantis and the relationships among its species, we generated DNA sequences for 42 individuals, and, given the variable placement of Tachiramantis in previous studies, analysed them with DNA sequences from GenBank representing 25 genera of terraranas. In total, the final matrix included DNA sequences from 414 terminals, which we analysed using tree-alignment under the parsimony optimality criterion. To identify morphological synapomorphies and diagnostic characters, we also examined cranial osteology and axial skeleton morphology. Our analyses corroborated both the placement of Tachiramantis far from Pristimantis in Craugastoridae and the monophyly of Tachiramantis. We also found that six species currently referred to Pristimantis, all endemic to the Sierra Nevada de Santa Marta, comprise the sister clade of Tachiramantis. This highly endemic clade is both well-supported by molecular data and diagnosed from Tachiramantis by seven morphological synapomorphies, leading us to recognize it as a new genus. http://zoobank.org/urn:lsid:zoobank.org:act:0036039F-F400-4CD4-A6AD-D3DD2B34BA4E
自2008年对Terrarana蛙的系统学进行彻底改革以来，已经命名了五个新属，其中包括委内瑞拉海岸山脉的Tachiramantis，以及哥伦比亚东部科迪勒拉山脉和委内瑞拉-哥伦比亚边境的Sierra de Perijá山脉的邻近地区。Tachiramantis的发现引发了人们对附近内华达山脉圣玛尔塔的几个Pristimantis物种之间关系的质疑，这些物种以前被认为与现在被称为Tachiramartis的物种关系密切。为了测试鲎的单系性及其物种之间的关系，我们生成了42个个体的DNA序列，并考虑到鲎在先前研究中的可变位置，用GenBank代表25个terraranas属的DNA序列对其进行了分析。总的来说，最终矩阵包括来自414个末端的DNA序列，我们在简约最优性标准下使用树比对对其进行了分析。为了确定形态突触形态和诊断特征，我们还检查了颅骨和轴骨形态。我们的分析证实了鲎在螃蟹科中远离原始鲎的位置，以及鲎的单系性。我们还发现，目前被称为Pristimantis的六个物种都是内华达山脉圣玛尔塔的特有物种，构成了Tachiramantis的姐妹分支。这种高度地方性的分支既有分子数据的有力支持，也有七种形态突触形态对其进行了诊断，使我们认识到它是一个新属。http://zoobank.org/urn:lsid:zoobank.org:act:0036039F-F400-4CD4-a6d-d3d2b34ba4e
{"title":"A new genus of terraranas (Anura: Brachycephaloidea) from northern South America, with a systematic review of Tachiramantis","authors":"S. Arroyo, Mariane Targino, L. A. Rueda-Solano, J. Daza, T. Grant","doi":"10.1080/14772000.2022.2123865","DOIUrl":"https://doi.org/10.1080/14772000.2022.2123865","url":null,"abstract":"Since the systematics of Terrarana frogs was overhauled in 2008, five new genera have been named, including Tachiramantis from the Venezuelan Coastal Range and adjacent parts of the Cordillera Oriental of Colombia and the Sierra de Perijá along the Venezuela–Colombia border. The discovery of Tachiramantis raises questions about the relationships of several species of Pristimantis in the nearby Sierra Nevada de Santa Marta previously hypothesized to be closely related to species now referred to Tachiramantis. To test the monophyly of Tachiramantis and the relationships among its species, we generated DNA sequences for 42 individuals, and, given the variable placement of Tachiramantis in previous studies, analysed them with DNA sequences from GenBank representing 25 genera of terraranas. In total, the final matrix included DNA sequences from 414 terminals, which we analysed using tree-alignment under the parsimony optimality criterion. To identify morphological synapomorphies and diagnostic characters, we also examined cranial osteology and axial skeleton morphology. Our analyses corroborated both the placement of Tachiramantis far from Pristimantis in Craugastoridae and the monophyly of Tachiramantis. We also found that six species currently referred to Pristimantis, all endemic to the Sierra Nevada de Santa Marta, comprise the sister clade of Tachiramantis. This highly endemic clade is both well-supported by molecular data and diagnosed from Tachiramantis by seven morphological synapomorphies, leading us to recognize it as a new genus. http://zoobank.org/urn:lsid:zoobank.org:act:0036039F-F400-4CD4-A6AD-D3DD2B34BA4E","PeriodicalId":54437,"journal":{"name":"Systematics and Biodiversity","volume":" ","pages":"1 - 25"},"PeriodicalIF":1.9,"publicationDate":"2022-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47617348","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-10-17DOI: 10.1080/14772000.2022.2116124
Marcos A. L. Teixeira, T. Bakken, Pedro E. Vieira, J. Langeneck, B. Sampieri, P. Kasapidis, A. Ravara, A. Nygren, F. Costa
Past molecular studies using mtDNA sequences and alloenzymes signalled the existence of at least two cryptic species within the Hediste diversicolor morphotype, in European coasts. However, to this day, no new species descriptions have been made. In this study, we identified five completely sorted lineages using a multi-locus approach, including the mitochondrial DNA cytochrome oxidase I gene (COI-5P) and the nuclear markers ITS2 rRNA and 28S rRNA. The molecular data were complemented with morphometric measurements examined through multivariate statistical analysis and the incorporation of statistical dissimilarities. Apart from the Baltic Sea, where three of the lineages occur in sympatry, Hediste diversicolor comprises four deeply divergent allopatric lineages in the rest of Europe. They group populations from the NE Atlantic and part of the Western Mediterranean Sea; from the Tyrrhenian Sea; from the Adriatic and Ionian Sea; and, lastly, from the Caspian, Black and the northern Aegean Seas. The lineage from the Ionian Sea revealed low genetic distances compared with the one from the Adriatic Sea and lacked enough specimens for the morphometric analysis, preventing further conclusions about its independent status. Three independent morphometric clusters were identified mainly based on worm size, the distance between the anterior and posterior eyes, parapodia proportions and the length of several prostomial appendages. Two sympatric lineages present in the Baltic Sea, showed evidence of possible hybridization and lacked significant PCA morphometric variation between them. The two remaining lineages were formally described as new species, namely Hediste pontii sp. nov. (Adriatic Sea) and Hediste astae sp. nov. (northern Aegean, Caspian and Black Seas). These new species can now be formally recognized and used in biomonitoring or other relevant ecological studies. Finally, a neotype is defined for H. diversicolor, whose usage is restricted to the NE Atlantic lineage. http://www.zoobank.org/urn:lsid:zoobank.org:pub:948C73FC-B07F-40A3-B8FA-03B60DE2089D
{"title":"The curious and intricate case of the European Hediste diversicolor (Annelida, Nereididae) species complex, with description of two new species","authors":"Marcos A. L. Teixeira, T. Bakken, Pedro E. Vieira, J. Langeneck, B. Sampieri, P. Kasapidis, A. Ravara, A. Nygren, F. Costa","doi":"10.1080/14772000.2022.2116124","DOIUrl":"https://doi.org/10.1080/14772000.2022.2116124","url":null,"abstract":"Past molecular studies using mtDNA sequences and alloenzymes signalled the existence of at least two cryptic species within the Hediste diversicolor morphotype, in European coasts. However, to this day, no new species descriptions have been made. In this study, we identified five completely sorted lineages using a multi-locus approach, including the mitochondrial DNA cytochrome oxidase I gene (COI-5P) and the nuclear markers ITS2 rRNA and 28S rRNA. The molecular data were complemented with morphometric measurements examined through multivariate statistical analysis and the incorporation of statistical dissimilarities. Apart from the Baltic Sea, where three of the lineages occur in sympatry, Hediste diversicolor comprises four deeply divergent allopatric lineages in the rest of Europe. They group populations from the NE Atlantic and part of the Western Mediterranean Sea; from the Tyrrhenian Sea; from the Adriatic and Ionian Sea; and, lastly, from the Caspian, Black and the northern Aegean Seas. The lineage from the Ionian Sea revealed low genetic distances compared with the one from the Adriatic Sea and lacked enough specimens for the morphometric analysis, preventing further conclusions about its independent status. Three independent morphometric clusters were identified mainly based on worm size, the distance between the anterior and posterior eyes, parapodia proportions and the length of several prostomial appendages. Two sympatric lineages present in the Baltic Sea, showed evidence of possible hybridization and lacked significant PCA morphometric variation between them. The two remaining lineages were formally described as new species, namely Hediste pontii sp. nov. (Adriatic Sea) and Hediste astae sp. nov. (northern Aegean, Caspian and Black Seas). These new species can now be formally recognized and used in biomonitoring or other relevant ecological studies. Finally, a neotype is defined for H. diversicolor, whose usage is restricted to the NE Atlantic lineage. http://www.zoobank.org/urn:lsid:zoobank.org:pub:948C73FC-B07F-40A3-B8FA-03B60DE2089D","PeriodicalId":54437,"journal":{"name":"Systematics and Biodiversity","volume":" ","pages":"1 - 39"},"PeriodicalIF":1.9,"publicationDate":"2022-10-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48320937","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-10-17DOI: 10.1080/14772000.2022.2117247
V. Tavares, A. L. Gardner, Molly M. Mcdonough, J. Maldonado, E. Gutiérrez, P. Velazco, G. Garbino
Patterns of rarity, endemism, and vulnerability are known for four species of yellow-eared bats of the genus Vampyressa: V. melissa, V. voragine, V. elisabethae, and V. sinchi, the last two described based on skull and external morphology. We extracted DNA from the holotypes of V. elisabethae and V. sinchi using strict ancient DNA protocols and sequenced the complete cytochrome-b gene of the mtDNA to investigate the phylogenetic relationships within the genus and employed species-delimitation tests to evaluate the validity of all the currently named species of Vampyressa. The resulting tree topology and our species-delimitation analyses corroborate the validity of V. elisabethae and V. voragine, but places V. sinchi in V. melissa. Based on these results and phenotypic variation, we recognize five valid species in Vampyressa and treat sinchi as a subspecies of a polytypic V. melissa; for which we provide a rediagnosis. Our results show that V. elisabethae is as highly divergent genetically as it is morphologically, and suggest that V. thyone, one of the two species of Vampyressa known to have wide distributions, is a species complex requiring further investigation.
{"title":"Historical DNA of rare yellow-eared bats Vampyressa Thomas, 1900 (Chiroptera, Phyllostomidae) clarifies phylogeny and species boundaries within the genus","authors":"V. Tavares, A. L. Gardner, Molly M. Mcdonough, J. Maldonado, E. Gutiérrez, P. Velazco, G. Garbino","doi":"10.1080/14772000.2022.2117247","DOIUrl":"https://doi.org/10.1080/14772000.2022.2117247","url":null,"abstract":"Patterns of rarity, endemism, and vulnerability are known for four species of yellow-eared bats of the genus Vampyressa: V. melissa, V. voragine, V. elisabethae, and V. sinchi, the last two described based on skull and external morphology. We extracted DNA from the holotypes of V. elisabethae and V. sinchi using strict ancient DNA protocols and sequenced the complete cytochrome-b gene of the mtDNA to investigate the phylogenetic relationships within the genus and employed species-delimitation tests to evaluate the validity of all the currently named species of Vampyressa. The resulting tree topology and our species-delimitation analyses corroborate the validity of V. elisabethae and V. voragine, but places V. sinchi in V. melissa. Based on these results and phenotypic variation, we recognize five valid species in Vampyressa and treat sinchi as a subspecies of a polytypic V. melissa; for which we provide a rediagnosis. Our results show that V. elisabethae is as highly divergent genetically as it is morphologically, and suggest that V. thyone, one of the two species of Vampyressa known to have wide distributions, is a species complex requiring further investigation.","PeriodicalId":54437,"journal":{"name":"Systematics and Biodiversity","volume":" ","pages":"1 - 13"},"PeriodicalIF":1.9,"publicationDate":"2022-10-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46234561","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-10-13DOI: 10.1080/14772000.2022.2118389
M. Kodama, K. White, Takuya K. Hosoki, Ryuta Yoshida
The order Amphipoda is one of the largest orders in the Crustacea, many species of which are involved in symbiotic relations with other animals. Despite the considerable diversity of the Amphipoda both in number of species and ecology, polychaete-commensalism has been poorly known and described from few species. In particular, there has been little discussion of the evolutionary origins of polychaete-commensalism relationships. Amphipods in the family Leucothoidae are known as commensal inhabitants of filter-feeding invertebrates, where they utilize the feeding current produced by their hosts. Leucothoids are typically found from three types of filter-feeding hosts: sponges, ascidians, and bivalve molluscs. Relatively little is known about leucothoids that associate with other types of hosts. An undescribed species of the genus Leucothoe associated with burrows of terebellid polychaetes from Japan has been found. We herein describe this species as Leucothoe vermicola sp. nov., providing COI mtDNA and 18S rDNA sequences for DNA barcoding. This is the first record of a symbiotic association between Leucothoidae and Terebellidae. We also provide a hypothesis of the phylogenetic position of L. vermicola sp. nov. and evolution of the polychaete-commensalism in this species. The polychaete-commensalism in the present new species may have resulted from the entry of generalist species into polychaete hosts, rather than from host-conversion from a specialist species. http://zoobank.org/urn:lsid:zoobank.org:pub:4EBA42DD-EC19-4278-B712-8BEFBC519F8F
{"title":"Leucothoid amphipod and terebellid polychaete symbiosis with description of a new species of the genus Leucothoe Leach, 1814 (Crustacea: Amphipoda: Leucothoidae)","authors":"M. Kodama, K. White, Takuya K. Hosoki, Ryuta Yoshida","doi":"10.1080/14772000.2022.2118389","DOIUrl":"https://doi.org/10.1080/14772000.2022.2118389","url":null,"abstract":"The order Amphipoda is one of the largest orders in the Crustacea, many species of which are involved in symbiotic relations with other animals. Despite the considerable diversity of the Amphipoda both in number of species and ecology, polychaete-commensalism has been poorly known and described from few species. In particular, there has been little discussion of the evolutionary origins of polychaete-commensalism relationships. Amphipods in the family Leucothoidae are known as commensal inhabitants of filter-feeding invertebrates, where they utilize the feeding current produced by their hosts. Leucothoids are typically found from three types of filter-feeding hosts: sponges, ascidians, and bivalve molluscs. Relatively little is known about leucothoids that associate with other types of hosts. An undescribed species of the genus Leucothoe associated with burrows of terebellid polychaetes from Japan has been found. We herein describe this species as Leucothoe vermicola sp. nov., providing COI mtDNA and 18S rDNA sequences for DNA barcoding. This is the first record of a symbiotic association between Leucothoidae and Terebellidae. We also provide a hypothesis of the phylogenetic position of L. vermicola sp. nov. and evolution of the polychaete-commensalism in this species. The polychaete-commensalism in the present new species may have resulted from the entry of generalist species into polychaete hosts, rather than from host-conversion from a specialist species. http://zoobank.org/urn:lsid:zoobank.org:pub:4EBA42DD-EC19-4278-B712-8BEFBC519F8F","PeriodicalId":54437,"journal":{"name":"Systematics and Biodiversity","volume":"20 1","pages":"1 - 20"},"PeriodicalIF":1.9,"publicationDate":"2022-10-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41436101","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-10-10DOI: 10.1080/14772000.2022.2126022
Fernando Carlos De Diego, F. Robbiati, J. Gaitán, R. Fortunato
The ability of a species to colonize new geographical areas is closely related to its morphological response to environmental gradients. Previous studies compared native and alien invasive species in their ability to modify their morphology in reaction to climatic and edaphic factors; however, taxonomically close species have been scarcely analyzed. In this study, morphological variability patterns associated with abiotic factors were evaluated in Trifolium polymorphum, a native species distributed from southern Brazil to northern Patagonia, and Trifolium repens, a species introduced as an important forage crop and naturalized in diverse environments of southern South America. A morphometric study was carried out using herbarium specimens that were then georeferenced to obtain environmental and distributional data. Morphological traits along abiotic and geographical gradients were analyzed, predictive distribution and current and future niches were modelled. Our results showed that leaf morphology of T. repens responds to precipitation and temperature factors, which could explain its invasive behavior in a wide range of environments. Morphological variability of the native T. polymorphum presented a low association with abiotic factors, suggesting possible difficulties in adapting to future environmental changes. Ecological niche modelling analysis showed several overlap areas between species in the current model and a greater expansion of the distribution range of the invasive species in future climate change scenarios.
{"title":"Morphological and distributional patterns of native and invasive Trifolium (Papilionoideae, Leguminosae) species in southern South America","authors":"Fernando Carlos De Diego, F. Robbiati, J. Gaitán, R. Fortunato","doi":"10.1080/14772000.2022.2126022","DOIUrl":"https://doi.org/10.1080/14772000.2022.2126022","url":null,"abstract":"The ability of a species to colonize new geographical areas is closely related to its morphological response to environmental gradients. Previous studies compared native and alien invasive species in their ability to modify their morphology in reaction to climatic and edaphic factors; however, taxonomically close species have been scarcely analyzed. In this study, morphological variability patterns associated with abiotic factors were evaluated in Trifolium polymorphum, a native species distributed from southern Brazil to northern Patagonia, and Trifolium repens, a species introduced as an important forage crop and naturalized in diverse environments of southern South America. A morphometric study was carried out using herbarium specimens that were then georeferenced to obtain environmental and distributional data. Morphological traits along abiotic and geographical gradients were analyzed, predictive distribution and current and future niches were modelled. Our results showed that leaf morphology of T. repens responds to precipitation and temperature factors, which could explain its invasive behavior in a wide range of environments. Morphological variability of the native T. polymorphum presented a low association with abiotic factors, suggesting possible difficulties in adapting to future environmental changes. Ecological niche modelling analysis showed several overlap areas between species in the current model and a greater expansion of the distribution range of the invasive species in future climate change scenarios.","PeriodicalId":54437,"journal":{"name":"Systematics and Biodiversity","volume":"20 1","pages":"1 - 17"},"PeriodicalIF":1.9,"publicationDate":"2022-10-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41714983","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-10-10DOI: 10.1080/14772000.2022.2119295
Sérgio Marques-Souza, Katia Cristina M. Pellegrino, T. O. Brunes, Fernando J. M. Rojas-Runjaic, M. Rodrigues
Knowledge about the biological diversification of vertebrates in the Amazonia has previously relied on taxa that diversified in relatively recent timeframes (i.e. Plio-Pleistocene). Dating of evolutionary events in small lizards and frogs, on the other hand, has progressively demonstrated that the major phylogenetic events in these organisms occurred earlier in time, from the Eocene to the Miocene, opening a window to reveal the Amazonia’s landscape dynamics throughout ancient periods. Here we investigate the phylogenetic relationships, diversification times, and biogeography of Loxopholis, a diverse genus of small leaf-litter ecpleopodin lizards endemic to the Amazonia. In order to place Loxopholis diversity into a larger taxonomic perspective, we used statistical biogeographic methods (BioGeoBEARS) to reconstruct the biogeography of the Ecpleopodini tribe. We found that the evolution of the Ecpleopodini occurred mostly in the Amazonia’s north region. Additionally, we found evidence that contacts between the Amazonia and the Atlantic Forest took place multiple times during the Cenozoic (earlier than previously proposed) and that these events influenced species colonization of open environments in South America via the Vanishing Refuge model. Our hypothesis on the evolution of Loxopholis, in contrast, suggests that multiple processes acted on the current species distribution, including three main dispersal events: the emergence of Lake Pebas, the rising of the Iquitos arch, the Andean orogeny and the emergence of the Panama Isthmus.
{"title":"A molecular perspective on the systematics and distribution of Loxopholis lizards in South and Central America, with advances on the biogeography of the tribe Ecpleopodini (Gymnophthalmidae: Squamata)","authors":"Sérgio Marques-Souza, Katia Cristina M. Pellegrino, T. O. Brunes, Fernando J. M. Rojas-Runjaic, M. Rodrigues","doi":"10.1080/14772000.2022.2119295","DOIUrl":"https://doi.org/10.1080/14772000.2022.2119295","url":null,"abstract":"Knowledge about the biological diversification of vertebrates in the Amazonia has previously relied on taxa that diversified in relatively recent timeframes (i.e. Plio-Pleistocene). Dating of evolutionary events in small lizards and frogs, on the other hand, has progressively demonstrated that the major phylogenetic events in these organisms occurred earlier in time, from the Eocene to the Miocene, opening a window to reveal the Amazonia’s landscape dynamics throughout ancient periods. Here we investigate the phylogenetic relationships, diversification times, and biogeography of Loxopholis, a diverse genus of small leaf-litter ecpleopodin lizards endemic to the Amazonia. In order to place Loxopholis diversity into a larger taxonomic perspective, we used statistical biogeographic methods (BioGeoBEARS) to reconstruct the biogeography of the Ecpleopodini tribe. We found that the evolution of the Ecpleopodini occurred mostly in the Amazonia’s north region. Additionally, we found evidence that contacts between the Amazonia and the Atlantic Forest took place multiple times during the Cenozoic (earlier than previously proposed) and that these events influenced species colonization of open environments in South America via the Vanishing Refuge model. Our hypothesis on the evolution of Loxopholis, in contrast, suggests that multiple processes acted on the current species distribution, including three main dispersal events: the emergence of Lake Pebas, the rising of the Iquitos arch, the Andean orogeny and the emergence of the Panama Isthmus.","PeriodicalId":54437,"journal":{"name":"Systematics and Biodiversity","volume":" ","pages":"1 - 14"},"PeriodicalIF":1.9,"publicationDate":"2022-10-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45742470","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-09-20DOI: 10.1080/14772000.2022.2110172
D. A. Esquivel, M. J. Pereira, J. Stuhler, Daniela M. Rossoni, P. Velazco, F. M. Bianchi
Phenotypically similar species – often called cryptic species – represent a challenge for taxonomy and conservation biology because they are usually undetectable to scientists. To unravel these cryptic taxa, studies now employ data from different sources under an integrative approach. We present an assessment of the cryptic diversity of the Lophostoma brasiliense species complex (Chiroptera: Phyllostomidae) based on multiple lines of evidence (molecular, morphological, morphometric, and geographic data) and using molecular (ABGD, ASAP, GMYC, and bPTP) and phenotypic (distance-based approaches and Normal Mixture Model Analyses) species delimitation methods. Our analyses recognized two distinct lineages with clear allopatric distributions. One lineage corresponds to Lophostoma brasiliense with a cis-Andean distribution and the other to the formerly species Lophostoma nicaraguae with a trans-Andean distribution. The two lineages probably diverged from a vicariant speciation driven by the uplift of the Andes less than six million years ago. Our work also shows that the wide range of environmental conditions during the recent history of South America may have promoted restrictions to gene flow among the populations of Lophostoma brasiliense. Finally, we raised L. nicaraguae to species level clarifying the species limit and morphological characteristics of lineages, and we provide an emended diagnosis and comparisons between the two taxa. We highlight the need for multiple lines of evidence to solve the remaining taxonomic problems among the remaining species complexes in Lophostoma.
{"title":"Multiples lines of evidence unveil cryptic diversity in the Lophostoma brasiliense (Chiroptera: Phyllostomidae) complex","authors":"D. A. Esquivel, M. J. Pereira, J. Stuhler, Daniela M. Rossoni, P. Velazco, F. M. Bianchi","doi":"10.1080/14772000.2022.2110172","DOIUrl":"https://doi.org/10.1080/14772000.2022.2110172","url":null,"abstract":"Phenotypically similar species – often called cryptic species – represent a challenge for taxonomy and conservation biology because they are usually undetectable to scientists. To unravel these cryptic taxa, studies now employ data from different sources under an integrative approach. We present an assessment of the cryptic diversity of the Lophostoma brasiliense species complex (Chiroptera: Phyllostomidae) based on multiple lines of evidence (molecular, morphological, morphometric, and geographic data) and using molecular (ABGD, ASAP, GMYC, and bPTP) and phenotypic (distance-based approaches and Normal Mixture Model Analyses) species delimitation methods. Our analyses recognized two distinct lineages with clear allopatric distributions. One lineage corresponds to Lophostoma brasiliense with a cis-Andean distribution and the other to the formerly species Lophostoma nicaraguae with a trans-Andean distribution. The two lineages probably diverged from a vicariant speciation driven by the uplift of the Andes less than six million years ago. Our work also shows that the wide range of environmental conditions during the recent history of South America may have promoted restrictions to gene flow among the populations of Lophostoma brasiliense. Finally, we raised L. nicaraguae to species level clarifying the species limit and morphological characteristics of lineages, and we provide an emended diagnosis and comparisons between the two taxa. We highlight the need for multiple lines of evidence to solve the remaining taxonomic problems among the remaining species complexes in Lophostoma.","PeriodicalId":54437,"journal":{"name":"Systematics and Biodiversity","volume":" ","pages":"1 - 21"},"PeriodicalIF":1.9,"publicationDate":"2022-09-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47169838","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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