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Challenges and directions in analytical paleobiology. 分析古生物学的挑战和方向。
IF 2.7 2区 地球科学 Q2 BIODIVERSITY CONSERVATION Pub Date : 2023-08-01 Epub Date: 2023-02-27 DOI: 10.1017/pab.2023.3
Erin M Dillon, Emma M Dunne, Tom M Womack, Miranta Kouvari, Ekaterina Larina, Jordan Ray Claytor, Angelina Ivkić, Mark Juhn, Pablo S Milla Carmona, Selina Viktor Robson, Anwesha Saha, Jaime A Villafaña, Michelle E Zill

Over the last 50 years, access to new data and analytical tools has expanded the study of analytical paleobiology, contributing to innovative analyses of biodiversity dynamics over Earth's history. Despite-or even spurred by-this growing availability of resources, analytical paleobiology faces deep-rooted obstacles that stem from the need for more equitable access to data and best practices to guide analyses of the fossil record. Recent progress has been accelerated by a collective push toward more collaborative, interdisciplinary, and open science, especially by early-career researchers. Here, we survey four challenges facing analytical paleobiology from an early-career perspective: (1) accounting for biases when interpreting the fossil record; (2) integrating fossil and modern biodiversity data; (3) building data science skills; and (4) increasing data accessibility and equity. We discuss recent efforts to address each challenge, highlight persisting barriers, and identify tools that have advanced analytical work. Given the inherent linkages between these challenges, we encourage discourse across disciplines to find common solutions. We also affirm the need for systemic changes that reevaluate how we conduct and share paleobiological research.

在过去的50年里,获得新数据和分析工具扩大了分析古生物学的研究,有助于对地球历史上的生物多样性动态进行创新分析。尽管资源不断增加,甚至受到资源不断增加的刺激,但分析古生物学面临着根深蒂固的障碍,这些障碍源于需要更公平地获取数据和最佳实践来指导化石记录的分析。最近的进展因集体推动更具协作性、跨学科和开放性的科学而加速,尤其是早期职业研究人员。在这里,我们从职业生涯早期的角度调查了分析古生物学面临的四个挑战:(1)解释化石记录时的偏见;(2) 整合化石和现代生物多样性数据;(3) 培养数据科学技能;以及(4)提高数据的可访问性和公平性。我们讨论了最近为应对每一项挑战所做的努力,强调了持续存在的障碍,并确定了具有先进分析工作的工具。鉴于这些挑战之间的内在联系,我们鼓励跨学科的讨论,以找到共同的解决方案。我们还确认需要进行系统性变革,重新评估我们如何进行和共享古生物学研究。
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引用次数: 5
PAB volume 49 issue 3 Cover PAB第49卷第3期封面
IF 2.7 2区 地球科学 Q2 BIODIVERSITY CONSERVATION Pub Date : 2023-08-01 DOI: 10.1017/pab.2023.25
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引用次数: 0
Relative oversampling of carbonate rocks in the North American marine fossil record 北美海相化石记录中碳酸盐岩的相对过采样
IF 2.7 2区 地球科学 Q2 BIODIVERSITY CONSERVATION Pub Date : 2023-05-29 DOI: 10.1017/pab.2023.16
Diego Balseiro, M. Powell
Paleontologists have long stressed the need to know how sampling the fossil record might influence our knowledge of the evolution of life. Here, we combine fossil occurrences of North American marine invertebrates from the Paleobiology Database with lithologic data from Macrostrat to identify sampling patterns in carbonate and siliciclastic rocks. We aim to quantify temporal trends in sampling effort within and between lithologies, focusing on the proportion of total available volume that has been sampled (sampled fossiliferous proportion, here called κ). Results indicate that the sampled fossiliferous proportion was stable during the Paleozoic, and variable during the post-Paleozoic, but showed no systematic increase through time. Fossiliferous carbonate rocks are proportionally more sampled than siliciclastic rocks, with intervals where the carbonate κ is double the siliciclastic κ. Among possible explanations for the apparent oversampling of fossiliferous carbonate rocks, analyses suggest that barren units, taphonomic dissolution, or data entry errors cannot completely explain sampling patterns. Our results suggest that one of the important drivers might be that paleontologists publish taxonomic descriptions from carbonate rocks more frequently. The higher diversity in carbonate rocks might account for an ease in the description of unknown species and therefore a higher rate of published fossils. Finally, a strong effect in favor of carbonate rocks might distort our perception of diversity through time, even under commonly used standardization methods. Our results also confirm that previous descriptions of an increase in the proportion of sampled fossiliferous rocks over time were driven by the sampling of the nonmarine fossil record.
古生物学家长期以来一直强调,有必要了解对化石记录进行取样可能会如何影响我们对生命进化的认识。在这里,我们将古生物数据库中北美海洋无脊椎动物的化石出现与macrostrata的岩性数据相结合,以确定碳酸盐和硅质碎屑岩的采样模式。我们的目标是量化岩性内部和岩性之间采样努力的时间趋势,重点关注已采样的总可用体积的比例(采样化石比例,这里称为κ)。结果表明,古生代的化石比例较为稳定,后古生代的化石比例有所变化,但没有随时间系统增加的趋势。化石碳酸盐岩的采样比例高于硅屑岩,其中碳酸盐κ是硅屑岩κ的两倍。在对碳酸盐岩化石明显过采样的可能解释中,分析表明,贫瘠单元、地貌学溶解或数据输入错误不能完全解释采样模式。我们的研究结果表明,其中一个重要的驱动因素可能是古生物学家更频繁地发表碳酸盐岩的分类描述。碳酸盐岩中较高的多样性可能解释了对未知物种的描述比较容易,因此发表的化石比率较高。最后,即使在常用的标准化方法下,对碳酸盐岩有利的强烈影响可能会扭曲我们对时间多样性的看法。我们的结果也证实了先前关于化石岩石样本比例随时间增加的描述是由非海洋化石记录的采样驱动的。
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引用次数: 0
Is the hyoid a constraint on innovation? A study in convergence driving feeding in fish-shaped marine tetrapods – CORRIGENDUM 舌骨是创新的约束吗?鱼类海洋四足动物收敛性驱动摄食的研究-勘误
2区 地球科学 Q2 BIODIVERSITY CONSERVATION Pub Date : 2023-05-18 DOI: 10.1017/pab.2023.17
Lene Liebe Delsett, Nicholas Pyenson, Feiko Miedema, Øyvind Hammer
An abstract is not available for this content. As you have access to this content, full HTML content is provided on this page. A PDF of this content is also available in through the ‘Save PDF’ action button.
此内容没有摘要。当您可以访问此内容时,该页上会提供完整的HTML内容。此内容的PDF也可以通过“保存PDF”操作按钮获得。
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引用次数: 0
Sediment-encased pressure–temperature maturation experiments elucidate the impact of diagenesis on melanin-based fossil color and its paleobiological implications 沉积包裹的压力-温度成熟实验阐明了成岩作用对以黑色素为基础的化石颜色的影响及其古生物学意义
IF 2.7 2区 地球科学 Q2 BIODIVERSITY CONSERVATION Pub Date : 2023-05-08 DOI: 10.1017/pab.2023.11
Arindam Roy, M. Pittman, Thomas G. Kaye, E. Saitta
Melanin pigments are central to colors and patterns in modern vertebrate integuments, which inform upon ecological and behavioral strategies like crypsis, aposematism, and sociosexual selection. Over the last decade, melanin has emerged as a valuable tool for predicting color in exceptionally preserved fossil feathers and subsequent testing of paleobiological hypotheses in long-extinct dinosaurs and birds. Yet much remains to be learned about melanin stability, diagenetic alterations to melanin chemistry, and their implications for “paleocolor reconstruction.” Pressure–temperature maturation experiments with modern feathers offer a way to examine these topics but have mostly been conducted in closed-system capsules or open-system aluminum foil. Both methods have operational limitations and do not consider the filtering effect of porous sediment matrices on thermally labile chemical groups versus stable ones during natural fossilization. We use sediment-encased maturation to resolve this issue and demonstrate replication of organic preservation of melanin highly comparable to compression fossils. Our experiments, coupled with time-of-flight secondary ion mass spectrometry, show predictable volatilization of N/S-bearing molecules and increased melanin cross-linking with elevated temperatures. We also suggest that eumelanin is more stable compared with pheomelanin at higher temperatures, explaining why eumelanic colors (black, dark brown, iridescent) are better preserved in fossils than pheomelanic ones (reddish brown). Furthermore, we propose that proteins preferentially undergo hydrolysis more so than forming N-heterocycles in selectively open systems analogous to natural matrices. Thus, we conclude that melanin pigments and not diagenetically altered protein remnants are the key players in promoting fossilization of soft tissues like feathers.
黑色素是现代脊椎动物被皮颜色和图案的核心,它决定着生态和行为策略,如隐化、警告和社会性选择。在过去的十年里,黑色素已经成为一种有价值的工具,用于预测保存完好的化石羽毛的颜色,以及随后对灭绝已久的恐龙和鸟类的古生物学假设进行测试。然而,关于黑色素的稳定性、黑色素化学的成岩改变,以及它们对“古颜色重建”的影响,还有很多有待研究。压力-温度成熟实验与现代羽毛提供了一种方法来检查这些主题,但大多是在封闭系统胶囊或开放系统铝箔进行。这两种方法都有操作局限性,并且没有考虑多孔沉积物基质在自然石化过程中对热不稳定化学基团与稳定化学基团的过滤作用。我们使用沉积物包裹的成熟来解决这个问题,并证明黑色素的有机保存复制与压缩化石高度相似。我们的实验,结合飞行时间二次离子质谱分析,显示了可预测的含N/ s分子的挥发,以及随着温度升高而增加的黑色素交联。我们还认为,在较高的温度下,真黑素比异黑素更稳定,这就解释了为什么真黑素的颜色(黑色、深棕色、彩虹色)比异黑素的颜色(红棕色)在化石中保存得更好。此外,我们提出蛋白质在类似于自然基质的选择性开放系统中比形成n -杂环更优先地进行水解。因此,我们得出结论,黑色素色素而非成岩改变的蛋白质残余物是促进羽毛等软组织石化的关键参与者。
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引用次数: 1
Blood flow rates to leg bones of extinct birds indicate high levels of cursorial locomotion 已灭绝鸟类腿骨的血流速度表明其粗略运动水平很高
IF 2.7 2区 地球科学 Q2 BIODIVERSITY CONSERVATION Pub Date : 2023-05-02 DOI: 10.1017/pab.2023.14
Qiaohui Hu, C. V. Miller, E. Snelling, R. Seymour
Abstract Foramina of bones are beginning to yield more information about metabolic rates and activity levels of living and extinct species. This study investigates the relationship between estimated blood flow rate to the femur and body mass among cursorial birds extending back to the Late Cretaceous. Data from fossil foramina are compared with those of extant species, revealing similar scaling relationships for all cursorial birds and supporting crown bird–like terrestrial locomotor activity. Because the perfusion rate in long bones of birds is related to the metabolic cost of microfracture repair due to stresses applied during locomotion, as it is in mammals, this study estimates absolute blood flow rates from sizes of nutrient foramina located on the femur shafts. After differences in body mass and locomotor behaviors are accounted for, femoral bone blood flow rates in extinct species are similar to those of extant cursorial birds. Femoral robustness is generally greater in aquatic flightless birds than in terrestrial flightless and ground-dwelling flighted birds, suggesting that the morphology is shaped by life-history demands. Femoral robustness also increases in larger cursorial bird taxa, probably associated with their weight redistribution following evolutionary loss of the tail, which purportedly constrains femur length, aligns it more horizontally, and necessitates increased robustness in larger species.
骨孔开始提供更多关于现存和灭绝物种的代谢率和活动水平的信息。本研究调查了可追溯到晚白垩纪的游禽的股骨估计血流量与体重之间的关系。将化石有孔虫的数据与现存物种的数据进行了比较,揭示了所有游禽的相似尺度关系,并支持冠鸟样的陆地运动活动。由于鸟类长骨的灌注率与运动过程中施加的应力引起的微骨折修复的代谢成本有关,因此本研究根据位于股骨轴上的营养孔的大小估算绝对血流量。在考虑了体重和运动行为的差异后,灭绝物种的股骨骨血流量率与现存的游禽相似。水生不会飞的鸟类的股骨健壮性通常比陆生不会飞的鸟类和地面栖息的会飞的鸟类更强,这表明形态是由生活史需求形成的。股骨稳健性在大型游禽类群中也有所增加,这可能与它们在进化中失去尾巴后的体重重新分配有关,据称尾巴限制了股骨长度,使其更水平,因此需要在大型物种中增加稳健性。
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引用次数: 1
Linking host plants to damage types in the fossil record of insect herbivory – CORRIGENDUM 将寄主植物与食草昆虫化石记录中的损害类型联系起来-勘误表
IF 2.7 2区 地球科学 Q2 BIODIVERSITY CONSERVATION Pub Date : 2023-05-01 DOI: 10.1017/pab.2023.15
Sandra R. Schachat, J. Payne, C. Boyce
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引用次数: 0
PAB volume 49 issue 2 Cover and Front matter PAB第49卷第2期封面和封面
IF 2.7 2区 地球科学 Q2 BIODIVERSITY CONSERVATION Pub Date : 2023-05-01 DOI: 10.1017/pab.2023.13
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引用次数: 0
Diversification trajectories and paleobiogeography of Neogene chondrichthyans from Europe. 欧洲新近纪软骨鱼类的多样化轨迹和古生物地理学。
IF 2.7 2区 地球科学 Q2 BIODIVERSITY CONSERVATION Pub Date : 2023-05-01 Epub Date: 2023-02-08 DOI: 10.1017/pab.2022.40
Jaime A Villafaña, Marcelo M Rivadeneira, Catalina Pimiento, Jürgen Kriwet

Despite the rich fossil record of Neogene chondrichthyans (chimaeras, sharks, rays, and skates) from Europe, little is known about the macroevolutionary processes that generated their current diversity and geographical distribution. We compiled 4368 Neogene occurrences comprising 102 genera, 41 families, and 12 orders from four European regions (Atlantic, Mediterranean, North Sea, and Paratethys) and evaluated their diversification trajectories and paleobiogeographic patterns. In all regions analyzed, we found that generic richness increased during the early Miocene, then decreased sharply during the middle Miocene in the Paratethys, and moderately during the late Miocene and Pliocene in the Mediterranean and North Seas. Origination rates display the most significant pulses in the early Miocene in all regions. Extinction rate pulses varied across regions, with the Paratethys displaying the most significant pulses during the late Miocene and the Mediterranean and North Seas during the late Miocene and early Pliocene. Overall, up to 27% and 56% of the European Neogene genera are now globally and regionally extinct, respectively. The observed pulses of origination and extinction in the different regions coincide with warming and cooling events that occurred during the Neogene globally and regionally. Our study reveals complex diversity dynamics of Neogene chondrichthyans from Europe and their distinct biogeographic composition despite the multiple marine passages that connected the different marine regions during this time.

尽管欧洲新近纪的软骨鱼类(鱼类、鲨鱼、鳐鱼和鳐鱼)化石记录丰富,但人们对其目前的多样性和地理分布的宏观进化过程知之甚少。我们汇编了欧洲四个地区(大西洋、地中海、北海和帕拉特提斯)的新近纪鱼类(包括102属、41科和12目)的4368种鱼类,并评估了它们的多样化轨迹和古生物地理模式。我们发现,在所分析的所有地区,类群丰富度在中新世早期有所增加,然后在中新世中期急剧下降,在中新世晚期和上新世,地中海和北海的类群丰富度略有下降。所有地区的起源率在中新世早期都出现了最明显的脉冲。各地区的灭绝率脉冲各不相同,帕拉泰西在中新世晚期显示出最显著的脉冲,地中海和北海在中新世晚期和上新世早期显示出最显著的脉冲。总体而言,目前分别有高达 27% 和 56% 的欧洲新近纪属类在全球和地区范围内灭绝。在不同地区观察到的起源和灭绝脉冲与新近纪全球和地区范围内发生的升温和降温事件相吻合。我们的研究揭示了欧洲新近纪软骨鱼类复杂的多样性动态及其独特的生物地理组成,尽管在这一时期有多条海洋通道将不同的海洋区域连接起来。
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引用次数: 0
Design, Synthesis, and Investigation of Cytotoxic Effects of 5-Hydroxyindole-3-Carboxylic Acid and Ester Derivatives as Potential Anti-breast Cancer Agents. 5-Hydroxyindole-3-Carboxylic Acid and Ester Derivatives as Potential Anti-breast Cancer Agents 的设计、合成和细胞毒性作用研究。
IF 1.6 2区 地球科学 Q2 BIODIVERSITY CONSERVATION Pub Date : 2023-04-17 eCollection Date: 2023-01-01 DOI: 10.5812/ijpr-133868
Arezo Teymori, Shaya Mokhtari, Anna Sedaghat, Arash Mahboubi, Farzad Kobarfard

Breast cancer is a deadly disease with a high prevalence rate among females. Despite several treatments, scientists are still engaged in finding less invasive treatments for this disease. The cellular proliferation rate and cell viability survey are critical to assess the drug's effect on both normal and malignant cell populations. Indole derivatives are promising candidates for their cytotoxic effect causing on breast cancer cells; however, they are less toxic on normal cells. This study synthesized 23 novel 5-hydroxyindole-3-carboxylic acids and related esters featuring various linear, cyclic, and primary aromatic amines. The MTT assay indicated the cytotoxicity of all acid and ester derivatives against the MCF-7 cells with no significant cytotoxicity on normal human dermal fibroblasts cells. Compound 5d, an ester derivative possessing a 4-methoxy group, was the most potent compound, with a half-maximal effective concentration of 4.7 µM. Compounds 5a, 5d, and 5l bearing ester group in their structure demonstrated cytotoxicity values < 10 µM against the MCF-7 cell line and were safe for advanced screening.

乳腺癌是一种致命疾病,在女性中发病率很高。尽管有多种治疗方法,但科学家们仍在努力寻找治疗这种疾病的微创疗法。细胞增殖率和细胞活力调查对于评估药物对正常和恶性细胞群的影响至关重要。吲哚衍生物对乳腺癌细胞具有细胞毒性作用,是很有希望的候选药物;但它们对正常细胞的毒性较低。本研究合成了 23 种新型 5-羟基吲哚-3-羧酸及其相关酯类,这些酯类具有各种线性、环状和伯胺芳香族特征。MTT 试验表明,所有酸类和酯类衍生物对 MCF-7 细胞都有细胞毒性,而对正常人真皮成纤维细胞则无明显细胞毒性。化合物 5d 是一种具有 4-甲氧基的酯类衍生物,是最有效的化合物,其半最大有效浓度为 4.7 µM。结构中含有酯基的化合物 5a、5d 和 5l 对 MCF-7 细胞系的细胞毒性值均小于 10 µM,可以安全地进行高级筛选。
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引用次数: 0
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Paleobiology
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