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Meghalayan environmental evolution of the Thapsus coast (Tunisia) as inferred from sedimentological and micropaleontological proxies 根据沉积学和微古生物学指标推断的Thapsus海岸(突尼斯)Meghalayan环境演变
IF 2 3区 地球科学 Q2 Earth and Planetary Sciences Pub Date : 2022-09-13 DOI: 10.5194/jm-41-129-2022
M. Kamoun, M. Langer, Chahira Zaibi, M. Ben Youssef
Abstract. Thapsus was one of the Roman Empire's largest harbors and is situated next toan easily defended promontory on Tunisia's coast in northern Africa. It wasprovided with a huge stone and cement breakwater mole that extended almost 1 km into the sea. We examined sedimentological and micropaleontologicalproxies from 14C-dated core material and shifts in microfauna andmacrofauna community structure to infer patterns of sediment dynamics andthe chronology of events that shaped the coastal evolution in the DziraLagoon at Thapsus over the past 4000 years. The sedimentological and faunal record of environmental changes reflect a sequence of events thatdisplay a transition from an open to a semi-closed lagoon environment. Ataround 4070 cal yr BP and again between 2079 and 1280 cal yr BP, the data reveal two transgressive events and a deposition of sandy sediments ina largely open marine lagoon environment. The transgressive sands overlaymarine carbonate sandstones that are upper Pleistocene in age. A gradualclosure of the lagoon from 1280 cal yr BP until today is indicated bydecreasing species richness values, lower abundances of typical marine taxa,and increasing percent abundances of fine-grained sediments. Theenvironmental transition from an open to a closed lagoon setting was alsofavored by the construction of an extensive harbor breakwater mole, changesin longshore current drift patterns, and the formation of an extensivesand spit.
摘要塔普苏斯是罗马帝国最大的港口之一,位于北非突尼斯海岸一个容易防守的海角旁边。它有一个巨大的石头和水泥防波堤,延伸到海中近1公里。我们研究了沉积学和微古生物学的代用物,这些代用物来自14c年代的岩心材料,以及小动物和大型动物群落结构的变化,以推断出在过去4000年里形成塔普苏斯DziraLagoon海岸演化的沉积动力学模式和事件的年代学。环境变化的沉积学和动物记录反映了一系列事件,显示了从开放到半封闭的泻湖环境的转变。在大约4070 calyr BP和2079 - 1280 calyr BP之间,数据显示了两次海侵事件和一次沙质沉积物沉积,主要发生在开阔的海洋泻湖环境中。海侵砂覆在上更新世海相碳酸盐岩上。从1280 cal yr BP到今天,泻湖逐渐关闭,物种丰富度值下降,典型海洋分类群的丰度降低,细粒沉积物的丰度百分比增加。从开放式泻湖到封闭式泻湖的环境转变也得益于大规模港口防波堤的建设,沿岸洋流漂移模式的变化,以及广泛和吐槽的形成。
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引用次数: 0
Spine-like structures in Paleogene muricate planktonic foraminifera 古近系泥硅酸盐浮游有孔虫的棘状结构
IF 2 3区 地球科学 Q2 Earth and Planetary Sciences Pub Date : 2022-08-01 DOI: 10.5194/jm-41-107-2022
P. Pearson, E. John, B. Wade, S. D’haenens, C. Lear
Abstract. Muricate planktonic foraminifera comprise an extinctclade that was diverse and abundant in the Paleogene oceans and are widelyused in palaeoclimate research as geochemical proxy carriers for the upperoceans. Their characteristic wall texture has surface projections called“muricae” formed by upward deflection and mounding of successive layers ofthe test wall. The group is generally considered to have lacked “truespines”: that is, acicular calcite crystals embedded in and projecting fromthe test surface such as occur in many modern and some Paleogene groups.Here we present evidence from polished sections, surface wall scanningelectron microscope images and test dissections, showing that radiallyorientated crystalline spine-like structures occur in the centre of muricaein various species of Acarinina and Morozovella and projected from the test wall in life. Theirmorphology and placement in the wall suggest that they evolvedindependently of true spines. Nevertheless, they may have served a similarrange of functions as spines in modern species, including aiding buoyancyand predation and especially harbouring algal photosymbionts, the functionfor which we suggest they probably first evolved. Our observationsstrengthen the analogy between Paleogene mixed-layer-dwelling planktonicforaminifera and their modern spinose counterparts.
摘要泥质浮游有孔虫是古近系海洋中一种多样而丰富的灭绝分支,在古气候研究中被广泛用作上层海洋的地球化学代理载体。它们的特征墙纹理具有被称为“muricae”的表面投影,该投影是由测试墙的连续层向上偏转和堆积形成的。该组通常被认为缺乏“真棘”:即嵌入测试表面并从测试表面突出的针状方解石晶体,如许多现代和一些古近纪组中出现的。在这里,我们提供了来自抛光切片、表面壁扫描电子显微镜图像和测试解剖的证据,表明径向取向的晶体棘状结构出现在各种Acarinina和Morozovella的muricaein的中心,并在生活中从测试壁投影出来。它们的形态和在墙上的位置表明,它们是由真棘进化而来的。尽管如此,它们在现代物种中可能具有与刺相似的功能,包括帮助浮力和捕食,尤其是庇护藻类光共生体,我们认为它们可能是首次进化的。我们的观测结果加强了古近系混合层浮游有孔虫与现代棘虫的相似性。
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引用次数: 1
Lower Jurassic calcareous nannofossil taxonomy revisited according to the Neuquén Basin (Argentina) record 下侏罗统钙质纳米化石分类根据阿根廷neuqusamn盆地记录重新研究
IF 2 3区 地球科学 Q2 Earth and Planetary Sciences Pub Date : 2022-04-26 DOI: 10.5194/jm-41-75-2022
Micaela Chaumeil Rodríguez, E. Mattioli, J. P. Pérez Panera
Abstract. Standard Early Jurassic biostratigraphic studies wereperformed in the boreal and Tethys realms (western Europe and northernAfrica), and biozonations from these areas are the most accurate of theworld. Comparatively, investigations in the Pacific realm are scarce, and, inArgentina, they are limited to contributions based on oil-industrysubsurface and outcrop reports for the Los Molles Formation. A focusedsystematic analysis was not previously addressed in the area. TheNeuquén Basin in west–central Argentina offers a unique opportunity tostudy the Early Jurassic calcareous nannofossil history in thesouth-eastern Pacific Ocean. Calcareous nannofossil assemblages from ElMatuasto I section (Los Molles Formation) represent one of the earliestrecords for the Early Jurassic in the Neuquén Basin and one of the fewfor the eastern Pacific realm. A detailed systematic analysis allowed therecognition of major bioevents and a comparison with worldwide associationsand biostratigraphic schemes. A thorough taxonomic discussion of the EarlyJurassic nannofossil species of the Neuquén Basin is presented for thefirst time. Herein, the taxonomic features of coccoliths recorded in theNeuquén Basin are settled. The age of the calcareous nannofossilassemblages recorded in El Matuasto I is early–late Pliensbachian, coveringthe NJT4a to NJT4c subzones. Similarities between the Neuquén Basin andlocalities from the proto-Atlantic region suggest an effective connectionbetween the Pacific and Tethyan basins during the Pliensbachian.
摘要标准的早侏罗世生物地层学研究是在北方和特提斯地区(西欧和北非)进行的,这些地区的生物区划是世界上最准确的。相比之下,在太平洋地区的调查很少,而且在阿根廷,这些调查仅限于基于石油工业对Los Molles地层的地下和露头报告的贡献。该地区以前没有进行重点系统分析。阿根廷中西部的Neuquén盆地为研究东南太平洋早侏罗世钙质超微化石历史提供了一个独特的机会。ElMatuasto I剖面(Los Molles组)的钙质超微化石组合代表了Neuquén盆地早侏罗世的最早记录之一,也是东太平洋地区为数不多的记录之一。通过详细的系统分析,可以了解主要的生物事件,并与世界各地的协会和生物地层学方案进行比较。首次对Neuquén盆地早侏罗世的超微化石种进行了深入的分类学讨论。在此,确定了诺伊屈恩盆地中记录的球石的分类特征。El Matuasto I中记录的钙质超微化石的年龄为早-晚Pliensbachian,覆盖了NJT4a至NJT4c亚带。Neuquén盆地与原大西洋地区的相似之处表明,太平洋和特提斯盆地在普林斯巴赫阶时期存在着有效的联系。
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引用次数: 2
Taxonomic review of living planktonic foraminifera 浮游有孔虫的分类综述
IF 2 3区 地球科学 Q2 Earth and Planetary Sciences Pub Date : 2022-03-11 DOI: 10.5194/jm-41-29-2022
G. Brummer, M. Kučera
Abstract. Applications of fossil shells of planktonic foraminiferato decipher past environmental change and plankton evolution require arobust operational taxonomy. In this respect, extant planktonic foraminiferaprovide an opportunity for benchmarking the dominantly morphological speciesconcepts and classification of the group by considering ecological,physiological and genetic characters. Although the basic framework of thetaxonomy of extant planktonic foraminifera has been stable for half acentury, many details have changed, not the least in light of geneticevidence. In this contribution, we review the current taxonomy of livingplanktonic foraminifera, presenting a comprehensive standard that emergedfrom the meetings and consultations of the SCOR/IGBP Working Group 138“Planktonic foraminifera and ocean changes”. We present a comprehensiveannotated list of 50 species and subspecies recognized among livingplanktonic foraminifera and evaluate their generic and supragenericclassification. As a result, we recommend replacing the commonly used namesGloborotalia menardii by G. cultrata and Globorotalia theyeri by G. eastropacia, recognize Globorotaloides oveyi as a neglected but valid living species, andpropose transferring the three extant species previously assigned toTenuitella into a separate genus, Tenuitellita. We review the status of types and designatelectotypes for Globoturborotalita rubescens and Globigerinita uvula. We further provide an annotated list of synonyms andother names that have been applied previously to living planktonicforaminifera and outline the reasons for their exclusion. Finally, weprovide recommendations on how the presented classification scheme should beused in operational taxonomy for the benefit of producing replicable andinteroperable census counts.
摘要利用浮游有孔虫化石壳来破译过去的环境变化和浮游生物的进化需要一个强大的操作分类学。在这方面,现存的浮游有孔虫通过考虑生态、生理和遗传特征,为确定主要形态的物种概念和分类提供了机会。尽管现存浮游有孔虫分类的基本框架已经稳定了半个世纪,但许多细节已经发生了变化,尤其是在遗传学证据方面。在这篇文章中,我们回顾了目前浮游有孔虫的分类,并提出了一个综合的标准,该标准是由SCOR/IGBP工作组138“浮游有孔虫与海洋变化”会议和磋商产生的。本文对浮游有孔虫中已知的50种和亚种进行了全面的分类,并对它们的属和超属分类进行了评价。因此,我们建议将常用的Globorotalia menardii命名为G. cultrata, Globorotalia他们eri命名为G. eastropacia,承认Globorotaloides oveyi是一个被忽视但有效的活种,并建议将先前分配给tenuitella的三个现存物种转移到一个单独的属Tenuitellita中。本文综述了植物的分型现状,并指定了候选分型。我们进一步提供了一个有注释的同义词列表,以及以前应用于浮游有孔虫的其他名称,并概述了它们被排除在外的原因。最后,我们就如何在操作分类法中使用所提出的分类方案提供建议,以产生可复制和可互操作的人口普查计数。
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引用次数: 24
Astronomical calibration of late middle Eocene radiolarian bioevents from ODP Site 1260 (equatorial Atlantic, Leg 207) and refinement of the global tropical radiolarian biozonation 中始新世晚期ODP站点1260(赤道大西洋,Leg 207)放射虫生物事件的天文定标和全球热带放射虫生物带的精确化
IF 2 3区 地球科学 Q2 Earth and Planetary Sciences Pub Date : 2022-02-07 DOI: 10.5194/jm-41-1-2022
Mathias Meunier, T. Danelian
Abstract. The middle Eocene sedimentary sequence drilled at OceanDrilling Program Site 1260 (Leg 207), Demerara Rise, western equatorialAtlantic, yielded a rich and diverse radiolarian fauna. The exceptionallyexpanded and complete sedimentary record of this site, as well as theexistence of an orbital chronological framework, allowed us to study anumber of radiolarian bioevents with a very fine temporal resolution. Wecompiled a well-resolved succession of 71 radiolarian bioevents (firstoccurrences, last occurrences, and evolutionary transitions) and providedcalibrations to the geomagnetic polarity timescale and astronomical timescale. Comparison of the radiolarian successions at ODP Site 1260A with thenorthwestern Atlantic IODP Site U1403 and the IODP Sites U1331, U1332, and1333, situated in eastern equatorial Pacific, allowed the demonstration of thesynchroneity of primary radiolarian bioevents that underpin the middleEocene zonal scheme. Several secondary bioevents were also found to besynchronous between the two oceans and were therefore used to define sevennew subzones for the low-latitudinal middle Eocene sequences: Siphocampe ? amygdala intervalsubzone (RP13a), Coccolarnacium periphaenoides interval subzone (RP13b), Artostrobus quadriporus interval subzone (RP14a),Sethochytris triconiscus interval subzone (RP14b), Podocyrtis (Podocyrtopsis) apeza interval subzone (RP14c), Artobotrys biaurita interval subzone(RP15a), and Thyrsocyrtis (Pentalocorys) krooni interval subzone (RP15b). This refined radiolarianbiozonation has significantly improved stratigraphic resolution and agecontrol for the late middle Eocene interval (an average of two subzones per1.5 million years). A substantial diachronism was also found in 20 secondaryradiolarian bioevents between the two oceans. The majority of radiolarianspecies appear to have evolved first in the equatorial Atlantic Ocean andsubsequently in the equatorial Pacific. However, the reasons for thispattern of diachroneity currently remain uncertain and would require agreater sampling coverage to be elucidated.
摘要在赤道大西洋西部Demerara隆起的海洋钻探计划1260 (Leg 207)的中始新世沉积层序中,发现了丰富多样的放射虫动物群。这个地点的异常扩展和完整的沉积记录,以及轨道时间框架的存在,使我们能够以非常精细的时间分辨率研究放射虫生物事件。我们编制了71个放射虫生物事件序列(首次发生、最后发生和进化转变),并提供了地磁极性时间标和天文时间标的校准。将ODP站点1260A与西北大西洋IODP站点U1403以及位于赤道东太平洋的IODP站点U1331、U1332和1333的放射虫序列进行比较,可以证明初级放射虫生物事件的共时性,支持中始新世地带性方案。几个次生生物事件也被发现在两个海洋之间是同步的,因此被用来定义7个新的低纬度中始新世序列亚带:杏仁核区间亚区(RP13a)、圆棘球蛾区间亚区(RP13b)、四棱斑斑蝶蛾区间亚区(RP14a)、三棱斑蝶蛾区间亚区(RP14b)、足部(podocytopsis) apeza区间亚区(RP14c)、白斑斑蝶蛾区间亚区(RP15a)和胸腺(Pentalocorys) krooni区间亚区(RP15b)。这种精细的放射虫分带显著提高了中始新世晚期的地层分辨率和年龄控制(平均每150万年有两个亚带)。在两大洋之间的20次次生放射虫生物事件中也发现了明显的历时性。大多数放射虫物种似乎首先在赤道大西洋进化,随后在赤道太平洋进化。然而,这种历时模式的原因目前仍不确定,需要更大的采样覆盖范围来阐明。
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引用次数: 7
Biometry and taxonomy of Adriatic Ammonia species from Bellaria–Igea Marina (Italy) Bellaria–Igea Marina(意大利)亚得里亚海氨属物种的生物学和分类学
IF 2 3区 地球科学 Q2 Earth and Planetary Sciences Pub Date : 2021-11-25 DOI: 10.5194/jm-40-195-2021
J. Schönfeld, V. Beccari, Sarina Schmidt, S. Spezzaferri
Abstract. Living Ammonia species and an inventory of dead assemblages from Adriaticsubtidal, nearshore environments were investigated at four stations offBellaria, Italy. Ammonia falsobeccarii, Ammonia parkinsoniana, Ammonia tepida, and Ammonia veneta were recognized in the living (rose-bengal-stained)fauna, and Ammonia bellaria n. sp. is described herein for the first time. Ammonia beccarii was only foundin the dead assemblage. The biometry of 368 living individuals was analysedby using light microscopic and scanning electron microscopic images of threeaspects. A total of 15 numerical and 8 qualitative parameters were measured andassessed, 5 of which were recognized to be prone to a certainsubjectivity of the observer. The accuracy of numerical data as revealed bythe mean residuals of parallel measurements by different observers rangedfrom 0.5 % to 5.5 %. The results indicated a high degree of intraspecificvariability. The test sizes of the individual species were log-normallydistributed and varied among the stations. Parameters not related to thegrowth of the individuals, i.e. flatness of the tests, dimensions of thesecond-youngest chamber, proloculus, umbilical and pore diameter,sinistral–dextral coiling, and umbilical boss size, were recognized as beingspecies-distinctive in combination. They may well supplement qualitativecriteria that were commonly used for species discrimination such as a lobateoutline, a subacute or rounded peripheral margin, or the degree ofornamentation on the spiral and umbilical sides. The averages of themeasured parameters were often lower than the range of previously publishedvalues, mainly because the latter were retrieved from a few adult specimensand not from the whole assemblage as in the present approach. We concludethat the unprecedented high proportions of Ammonia beccarii in the northern Adriatic maywell be artificial. A robust species identification without genetic analysesis possible by considering designated biometric parameters. This approach isalso applicable to earlier literature data, and their re-assessment iscritical for a correct denomination of recent genotypes.
摘要在意大利Bellaria附近的四个站点调查了亚得里亚海潮下、近岸环境中的活氨物种和死亡组合。在活的(玫瑰红染色的)动物群中发现了镰形氨、帕金森氏氨、tepida氨和veneta氨,本文首次描述了bellaria n.sp.氨。氨beccarii只在尸体中发现。利用光镜和扫描电镜对368名活体生物进行了三个方面的分析。共测量和评估了15个数值参数和8个定性参数,其中5个参数被认为容易受到观察者的某些主观性的影响。不同观测者平行测量的平均残差所揭示的数值数据的精度范围为0.5 % 至5.5 %. 结果表明具有高度的种内变异性。个体物种的测试大小呈对数正态分布,并且在各个站点之间有所不同。与个体生长无关的参数,即测试的平坦度、第二年轻室的尺寸、前房、脐部和孔径、左右侧螺旋和脐凸台大小,被认为是组合中独特的个体。它们很可能补充了通常用于物种识别的定性边界,如叶形边界、亚急性或圆形外围边界,或螺旋和脐侧的命名程度。测量参数的平均值通常低于先前公布的值的范围,主要是因为后者是从少数成年物种中检索到的,而不是像目前的方法那样从整个集合中检索到。我们得出结论,亚得里亚海北部前所未有的高比例贝氏氨可能是人为的。通过考虑指定的生物特征参数,可以在没有遗传分析的情况下进行稳健的物种识别。这种方法也适用于早期的文献数据,对它们的重新评估对于正确命名最近的基因型至关重要。
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引用次数: 8
Late Eocene–early Miocene evolution of the southern Australian subtropical front: a marine palynological approach 澳大利亚南部副热带锋始新世晚期-中新世早期的演化:海洋孢粉学方法
IF 2 3区 地球科学 Q2 Earth and Planetary Sciences Pub Date : 2021-10-29 DOI: 10.5194/jm-40-175-2021
F. Hoem, I. Sauermilch, Suning Hou, H. Brinkhuis, F. Sangiorgi, P. Bijl
Abstract. Improvements in our capability to reconstruct ancientsurface-ocean conditions based on organic-walled dinoflagellate cyst(dinocyst) assemblages from the Southern Ocean provide an opportunity tobetter establish past position, strength and oceanography of the subtropicalfront (STF). Here, we aim to reconstruct the late Eocene to early Miocene(37–20 Ma) depositional and palaeoceanographic history of the STF in thecontext of the evolving Tasmanian Gateway as well as the potential influence ofAntarctic circumpolar flow and intense waxing and waning of ice. We approachthis by combining information from seismic lines (revisitingexisting data and generating new marine palynological data from Ocean Drilling Program (ODP) Hole 1168A)in the western Tasmanian continental slope. We apply improved taxonomicinsights and palaeoecological models to reconstruct the sea surfacepalaeoenvironmental evolution. Late Eocene–early Oligocene (37–30.5 Ma)assemblages show a progressive transition from dominant terrestrialpalynomorphs and inner-neritic dinocyst taxa as well as cysts produced byheterotrophic dinoflagellates to predominantly outer-neritic/oceanicautotrophic taxa. This transition reflects the progressive deepening of thewestern Tasmanian continental margin, an interpretation supported by our newseismic investigations. The dominance of autotrophic species like Spiniferites spp. andOperculodinium spp. reflects relatively oligotrophic conditions, like those of regionsnorth of the modern-day STF. The increased abundance in the earliest Mioceneof Nematosphaeropsis labyrinthus, typical for modern subantarctic zone (frontal) conditions, indicates acooling and/or closer proximity of the STF to the site . The absence ofmajor shifts in dinocyst assemblages contrasts with other records in the regionand suggests that small changes in surface oceanographic conditionsoccurred during the Oligocene. Despite the relatively southerly(63–55∘ S) location of Site 1168, the rather stable oceanographicconditions reflect the continued influence of the proto-Leeuwin Currentalong the southern Australian coast as Australia continued to driftnorthward. The relatively “warm” dinocyst assemblages at ODP Site 1168,compared with the cold assemblages at Antarctic Integrated Ocean Drilling Program (IODP) Site U1356, testify to theestablishment of a pronounced latitudinal temperature gradient in theOligocene Southern Ocean.
摘要基于南大洋有机壁鞭毛藻囊(dinocyst)组合,我们重建古代海洋表面条件的能力有所提高,这为更好地建立亚热带锋(STF)过去的位置、强度和海洋学提供了机会。在此,我们的目标是重建始新世晚期至中新世早期(37-20 Ma)的STF沉积和古海洋学历史,以及在演化的塔斯马尼亚门户的背景下,以及南极绕极流和强烈的冰的盛衰的潜在影响。我们通过结合来自塔斯马尼亚西部大陆斜坡地震线的信息(重新审视现有数据并从海洋钻探计划(ODP) 1168A孔生成新的海洋孢粉学数据)来解决这个问题。我们运用改进的分类学见解和古生态模型来重建海洋表面古环境演化。晚始新世-早渐新世(37-30.5 Ma)的组合显示出从主要的陆生形态和内浅海藻囊分类群以及异养鞭毛藻产生的囊群到主要的外浅海/海洋自养分类群的渐进转变。这种转变反映了西塔斯马尼亚大陆边缘的逐渐加深,这一解释得到了我们新的地震调查的支持。Spiniferites spp.和opercullodinium spp.等自养物种的优势反映了相对少营养的条件,就像现代STF以北的地区一样。中新世早期迷路线虫(Nematosphaeropsis迷路)丰度的增加,是现代亚南极带(锋面)条件下的典型特征,表明温度冷却和/或更接近于该地点。恐龙囊组合没有发生重大变化,这与该地区的其他记录形成鲜明对比,表明渐新世期间海面海洋条件发生了微小变化。尽管1168地点的位置相对偏南(63-55°S),但相当稳定的海洋学条件反映出,随着澳大利亚继续向北漂流,原始列温海流在澳大利亚南部海岸的持续影响。与南极综合海洋钻探计划(IODP) U1356地点的寒冷组合相比,ODP 1168地点相对“温暖”的恐龙囊组合证明了渐新世南大洋纬度温度梯度的建立。
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引用次数: 7
Semantic segmentation of vertebrate microfossils from computed tomography data using a deep learning approach 利用深度学习方法从计算机断层扫描数据中对脊椎动物微化石进行语义分割
IF 2 3区 地球科学 Q2 Earth and Planetary Sciences Pub Date : 2021-10-22 DOI: 10.5194/jm-40-163-2021
Yemao Hou, Mario Canul‐Ku, Xindong Cui, R. Hasimoto-Beltrán, Min Zhu
Abstract. Vertebrate microfossils have broad applications in evolutionarybiology and stratigraphy research areas such as the evolution of hardtissues and stratigraphic correlation. Classification is one of the basictasks of vertebrate microfossil studies. With the development of techniquesfor virtual paleontology, vertebrate microfossils can be classifiedefficiently based on 3D volumes. The semantic segmentation of differentfossils and their classes from CT data is a crucial step in thereconstruction of their 3D volumes. Traditional segmentation methods adoptthresholding combined with manual labeling, which is a time-consuming process. Ourstudy proposes a deep-learning-based (DL-based) semantic segmentation method forvertebrate microfossils from CT data. To assess the performance of themethod, we conducted extensive experiments on nearly 500 fish microfossils.The results show that the intersection over union (IoU) performance metricarrived at least 94.39 %, meeting the semantic segmentation requirementsof paleontologists. We expect that the DL-based method could also be appliedto other fossils from CT data with good performance.
摘要脊椎动物微体化石在进化生物学和地层学研究领域有着广泛的应用,如硬问题的演化和地层对比。分类是脊椎动物微体化石研究的基本任务之一。随着虚拟古生物学技术的发展,脊椎动物微体化石可以基于三维体积进行有效分类。从CT数据中对不同化石及其类别进行语义分割是构建其3D体积的关键步骤。传统的分割方法采用阈值和手动标记相结合的方法,这是一个耗时的过程。我们的研究提出了一种基于深度学习(DL)的CT数据脊椎动物微体化石语义分割方法。为了评估该方法的性能,我们对近500个鱼类微体化石进行了广泛的实验。结果表明,交集过并集(IoU)性能指标至少为94.39 %, 满足古生物学家对语义分割的要求。我们期望基于DL的方法也可以应用于CT数据中的其他化石,并具有良好的性能。
{"title":"Semantic segmentation of vertebrate microfossils from computed tomography data using a deep learning approach","authors":"Yemao Hou, Mario Canul‐Ku, Xindong Cui, R. Hasimoto-Beltrán, Min Zhu","doi":"10.5194/jm-40-163-2021","DOIUrl":"https://doi.org/10.5194/jm-40-163-2021","url":null,"abstract":"Abstract. Vertebrate microfossils have broad applications in evolutionary\u0000biology and stratigraphy research areas such as the evolution of hard\u0000tissues and stratigraphic correlation. Classification is one of the basic\u0000tasks of vertebrate microfossil studies. With the development of techniques\u0000for virtual paleontology, vertebrate microfossils can be classified\u0000efficiently based on 3D volumes. The semantic segmentation of different\u0000fossils and their classes from CT data is a crucial step in the\u0000reconstruction of their 3D volumes. Traditional segmentation methods adopt\u0000thresholding combined with manual labeling, which is a time-consuming process. Our\u0000study proposes a deep-learning-based (DL-based) semantic segmentation method for\u0000vertebrate microfossils from CT data. To assess the performance of the\u0000method, we conducted extensive experiments on nearly 500 fish microfossils.\u0000The results show that the intersection over union (IoU) performance metric\u0000arrived at least 94.39 %, meeting the semantic segmentation requirements\u0000of paleontologists. We expect that the DL-based method could also be applied\u0000to other fossils from CT data with good performance.\u0000","PeriodicalId":54786,"journal":{"name":"Journal of Micropalaeontology","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2021-10-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48900814","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Upper Eocene planktonic foraminifera from northern Saudi Arabia: implications for stratigraphic ranges 沙特阿拉伯北部始新世上部浮游有孔虫:对地层范围的影响
IF 2 3区 地球科学 Q2 Earth and Planetary Sciences Pub Date : 2021-09-28 DOI: 10.5194/jm-40-145-2021
B. Wade, M. Aljahdali, Y. Mufrreh, A. Memesh, S. AlSoubhi, Iyad S. Zalmout
Abstract. The Rashrashiyah Formation of the Sirhan Basin in northern SaudiArabia contains diverse assemblages of planktonic foraminifera. We examinedthe biostratigraphy, stratigraphic range and preservation of upper Eoceneplanktonic foraminifera. Assemblages are well-preserved and diverse, with40 species and 11 genera. All samples are assigned to the PriabonianGlobigerinatheka semiinvoluta Highest Occurrence Zone (E14), consistent with calcareous nannofossilbiostratigraphy indicating Zone CNE17. Well-preserved planktonicforaminifera assemblages from the lower part of the upper Eocene are rareworldwide. Our study provides new insights into the stratigraphic ranges ofmany species. We find older (Zone E14) stratigraphic occurrences of severalspecies of Globoturborotalita previously thought to have evolved in the latest Eocene (ZoneE15, E16) or Oligocene; these include G. barbula, G. cancellata, G. gnaucki, G. pseudopraebulloides, and G. paracancellata. Older stratigraphicoccurrences for Dentoglobigerina taci and Subbotina projecta are also found, and Globigerinatheka kugleri occurs at a younger stratigraphiclevel than previously proposed. Our revisions to stratigraphic rangesindicate that the late Eocene had a higher tropical–subtropical diversity ofplanktonic foraminifera than hitherto reported.
摘要沙特阿拉伯北部Sirhan盆地Rashrashiyah组包含多种浮游有孔虫组合。研究了上始新世浮游有孔虫的生物地层学、地层范围和保存情况。群落保存完好,种类多样,共有11属40种。所有样品均属于PriabonianGlobigerinatheka semiinvoluta最高产状带(E14),与钙质纳米化石地层指示带CNE17一致。上始新世下部保存完好的浮游有孔虫组合在世界范围内是罕见的。我们的研究为许多物种的地层范围提供了新的见解。我们发现了更古老(E14带)地层中出现的几种Globoturborotalita,它们以前被认为是在始新世晚期(e15、E16带)或渐新世进化的;这些品种包括黄颡鱼、黄颡鱼、黄颡鱼、伪黄颡鱼和副黄颡鱼。此外,还发现了Dentoglobigerina taci和Subbotina projecta的较早地层分布,而Globigerinatheka kugleri的地层分布较早。我们对地层范围的修正表明,晚始新世的热带-亚热带浮游有孔虫的多样性比迄今报道的要高。
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引用次数: 1
Revised taxonomy and early evolution of fasciculiths at the Danian–Selandian transition 丹麦-塞兰迪亚过渡时期束状纲的修订分类和早期演化
IF 2 3区 地球科学 Q2 Earth and Planetary Sciences Pub Date : 2021-09-13 DOI: 10.5194/jm-40-101-2021
F. Miniati, C. Cappelli, S. Monechi
Abstract. We present a taxonomic revision of the familyFasciculithaceae focused on forms that characterize the early evolution ofthis family group, which are currently included within the generaGomphiolithus, Diantholitha, Lithoptychius and Fasciculithus. The investigation approach is based on a combined light microscope(LM) and scanning electron microscope (SEM) analysis of specimens fromwell-preserved ODP–DSDP site material (ODP Site 1209; Site 1262; ODP Site1267; DSDP Site 356; DSDP Site 119) and outcrops (Bottaccione and Contessa,Italy; Qreiya, Egypt) across the Danian–Selandian transition. The directLM–SEM comparison of the same individual specimen provides clarification ofseveral taxa that were previously described only with the LM. One new genus(Tectulithus), five new combinations (Tectulithus janii, Tectulithus merloti, Tectulithus pileatus, Tectulithus stegastos and Tectulithus stonehengei) and six new species are defined(Diantholitha pilula, Diantholitha toquea, Lithoptychius galeottii, Lithoptychius maioranoae, Tectulithus pagodiformis and Fasciculithus realeae). The main characteristics useful to identify fasciculiths withthe LM are provided, together with a 3D–2D drawing showing the mainstructural features. The accurate taxonomic characterization grants thedevelopment of an evolutionary lineage that documents a great fasciculithdiversification during the late Danian and early Selandian. Four differentwell-constrained events have been documented: the lowest occurrence (LO) ofGomphiolithus, the paracme of Fasciculithaceae at the top of Chron C27r (PTC27r), theradiation of Diantholitha (LO Diantholitha), the paracme of Fasciculithaceae at the base of ChronC26r (PBC26r), the radiation of Lithoptychius (LO Lithoptychius) and the radiation of Tectulithus (lowest commonoccurrence of Tectulithus) that shows the biostratigraphic relevance of this group acrossthe Danian–Selandian transition.
摘要我们提出了一个分类修订的科。筋膜甲科的重点是表征该科早期进化的形式,这些形式目前被包括在蛾孔石属、Diantholitha属、石斑蝶属和筋膜甲属中。调查方法基于对保存完好的ODP–DSDP场地材料(ODP场地1209;场地1262;ODP场地1267;DSDP场地356;DSDP现场119)和达尼安-塞兰迪安过渡带露头(意大利Bottaccione和Contessa;埃及Qreiya)样本的组合光学显微镜(LM)和扫描电子显微镜(SEM)分析。同一个体标本的直接LM–SEM比较提供了以前仅用LM描述的几个分类群的澄清。定义了一个新属(Tectulithus)、五个新组合(Tectulithus janii、Tectulitchus merloti、Tectulethus pilatus、Tectulidhus stegastos和Tectulithus stonehengei)和六个新种(Dianthothitha pilula、Dianthothotha toquea、Lithoptychus galeotti、Lithotychus maioroae、Tectulichus pagodiformis和真筋膜藻)。提供了有助于用LM识别束晶的主要特征,以及显示主要结构特征的3D–2D图纸。准确的分类学特征为一个进化谱系的发展提供了依据,该谱系记录了大丹晚期和西兰早期的巨大束状分化。已经记录了四个不同的微约束事件:绿鞘最低发生率(LO),位于Chron C27r顶部的筋膜甲科伞骨(PTC27r),Diantholitha的治疗(LO Diantholisha),位于ChronC26r底部的筋膜甲科伞骨(PBC26r),Lithoptychius的辐射(LO Lithopthychius)和Tectulithus的辐射(Tectulithaus的最低常见产状)显示了该群在大年-塞拉兰阶过渡期间的生物地层学相关性。
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引用次数: 1
期刊
Journal of Micropalaeontology
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