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Improving a cortical pyramidal neuron model's classification performance on a real-world ecg dataset by extending inputs. 通过扩展输入改进皮层锥体神经元模型在真实世界心电图数据集上的分类性能。
IF 1.2 4区 医学 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2022-08-01 Epub Date: 2023-05-06 DOI: 10.1007/s10827-023-00851-1
Ilknur Kayikcioglu Bozkir, Zubeyir Ozcan, Cemal Kose, Temel Kayikcioglu, Ahmet Enis Cetin

Pyramidal neurons display a variety of active conductivities and complex morphologies that support nonlinear dendritic computation. Given growing interest in understanding the ability of pyramidal neurons to classify real-world data, in our study we applied both a detailed pyramidal neuron model and the perceptron learning algorithm to classify real-world ECG data. We used Gray coding to generate spike patterns from ECG signals as well as investigated the classification performance of the pyramidal neuron's subcellular regions. Compared with the equivalent single-layer perceptron, the pyramidal neuron performed poorly due to a weight constraint. A proposed mirroring approach for inputs, however, significantly boosted the classification performance of the neuron. We thus conclude that pyramidal neurons can classify real-world data and that the mirroring approach affects performance in a way similar to non-constrained learning.

金字塔神经元表现出各种活跃的导电性和复杂的形态,支持非线性树突计算。鉴于人们对理解锥体神经元对真实世界数据进行分类的能力越来越感兴趣,在我们的研究中,我们应用了详细的锥体神经元模型和感知器学习算法来对真实世界的ECG数据进行分类。我们使用格雷编码从ECG信号中生成尖峰模式,并研究了锥体神经元亚细胞区域的分类性能。与等效的单层感知器相比,由于权重限制,金字塔神经元表现不佳。然而,所提出的输入镜像方法显著提高了神经元的分类性能。因此,我们得出结论,锥体神经元可以对真实世界的数据进行分类,镜像方法以类似于非约束学习的方式影响性能。
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引用次数: 0
Functional architecture of M1 cells encoding movement direction. M1细胞编码运动方向的功能架构。
IF 1.2 4区 医学 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2022-08-01 Epub Date: 2023-06-07 DOI: 10.1007/s10827-023-00850-2
Caterina Mazzetti, Alessandro Sarti, Giovanna Citti

In this paper we propose a neurogeometrical model of the behaviour of cells of the arm area of the primary motor cortex (M1). We will mathematically express as a fiber bundle the hypercolumnar organization of this cortical area, first modelled by Georgopoulos (Georgopoulos et al., 1982; Georgopoulos, 2015). On this structure, we will consider the selective tuning of M1 neurons of kinematic variables of positions and directions of movement. We will then extend this model to encode the notion of fragments introduced by Hatsopoulos et al. (2007) which describes the selectivity of neurons to movement direction varying in time. This leads to consider a higher dimensional geometrical structure where fragments are represented as integral curves. A comparison with the curves obtained through numerical simulations and experimental data will be presented. Moreover, neural activity shows coherent behaviours represented in terms of movement trajectories pointing to a specific pattern of movement decomposition Kadmon Harpaz et al. (2019). Here, we will recover this pattern through a spectral clustering algorithm in the subriemannian structure we introduced, and compare our results with the neurophysiological one of Kadmon Harpaz et al. (2019).

在本文中,我们提出了一个初级运动皮层(M1)臂区细胞行为的神经几何模型。我们将把该皮层区域的超体积组织以纤维束的形式进行数学表达,该组织首先由Georgopoulos建模(Georgepoulos等人,1982;Georgeopoulos,2015)。在这个结构上,我们将考虑运动位置和方向的运动学变量的M1神经元的选择性调谐。然后,我们将扩展这个模型,对Hatsopoulos等人引入的片段概念进行编码。(2007)描述了神经元对随时间变化的运动方向的选择性。这导致考虑更高维度的几何结构,其中碎片表示为积分曲线。将与通过数值模拟和实验数据获得的曲线进行比较。此外,神经活动显示出以运动轨迹表示的连贯行为,指向运动分解的特定模式Kadmon-Harpaz等人。(2019)。在这里,我们将通过我们引入的亚黎曼结构中的光谱聚类算法来恢复这种模式,并将我们的结果与Kadmon Harpaz等人的神经生理学结果进行比较。(2019)。
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引用次数: 3
Effect of cortical extracellular GABA on motor response 皮层细胞外GABA对运动反应的影响
IF 1.2 4区 医学 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2022-06-13 DOI: 10.1007/s10827-022-00821-z
O. Hoshino, M. Zheng, Y. Fukuoka
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引用次数: 0
Numerical simulations of one- and two-dimensional stochastic neural field equations with delay 一维和二维时滞随机神经场方程的数值模拟
IF 1.2 4区 医学 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2022-05-27 DOI: 10.1007/s10827-022-00816-w
Tiago F. Sequeira, P. Lima
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引用次数: 3
High-frequency stimulation induces axonal conduction block without generating initial action potentials. 高频刺激引起轴突传导阻滞,但不产生初始动作电位。
IF 1.2 4区 医学 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2022-05-01 DOI: 10.1007/s10827-021-00806-4
Yihua Zhong, Jicheng Wang, Jonathan Beckel, William C de Groat, Changfeng Tai

The purpose of this modeling study is to develop a novel method to block nerve conduction by high frequency biphasic stimulation (HFBS) without generating initial action potentials. An axonal conduction model including both ion concentrations and membrane ion pumps is used to analyze the axonal response to 1 kHz HFBS. The intensity of HFBS is increased in multiple steps while maintaining the intensity at a sub-threshold level to avoid generating an action potential. Axonal conduction block by HFBS is defined as the failure of action potential propagation at the site of HFBS. The simulation analysis shows that step-increases in sub-threshold intensity during HFBS can successfully block axonal conduction without generating an initial response because the excitation threshold of the axon can be gradually increased by the sub-threshold HFBS. The mechanisms underlying the increase in excitation threshold involve changes in intracellular and extracellular sodium and potassium concentration, change in the resting potential, partial inactivation of the sodium channel and partial activation of the potassium channel by HFBS. When the excitation threshold reaches a sufficient level, an acute block occurs first and after additional sub-threshold HFBS it is followed by a post-stimulation block. This study indicates that step-increases in sub-threshold HFBS intensity induces a gradual increase in axonal excitation threshold that may allow HFBS to block nerve conduction without generating an initial response. If this finding is proven to be true in human, it will significantly impact clinical applications of HFBS to treat chronic pain.

本研究旨在建立一种不产生初始动作电位的高频双相刺激(HFBS)阻断神经传导的新方法。利用包括离子浓度和膜离子泵在内的轴突传导模型分析了轴突对1khz高频脉冲的响应。HFBS的强度分多个步骤增加,同时将强度维持在亚阈值水平,以避免产生动作电位。HFBS引起的轴突传导阻滞定义为动作电位在HFBS部位传播失败。仿真分析表明,亚阈值强度的阶跃增加可以在不产生初始响应的情况下成功阻断轴突传导,因为亚阈值高强度刺激可以逐渐提高轴突的激发阈值。激发阈值升高的机制涉及细胞内外钠钾浓度的变化、静息电位的变化、高强度刺激对钠通道的部分失活和对钾通道的部分激活。当兴奋阈值达到足够的水平时,首先发生急性阻滞,在额外的亚阈值HFBS之后,接着是刺激后阻滞。本研究表明,阈下高强度刺激的阶梯式增加可诱导轴突兴奋阈值的逐渐增加,这可能使高强度刺激在不产生初始反应的情况下阻断神经传导。如果这一发现在人体中被证明是正确的,将对HFBS治疗慢性疼痛的临床应用产生重大影响。
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引用次数: 3
Interneuronal dynamics facilitate the initiation of spike block in cortical microcircuits 神经元间动力学促进皮层微回路中尖峰阻滞的发生
IF 1.2 4区 医学 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2022-04-19 DOI: 10.1007/s10827-022-00815-x
W. Stein, A. Harris
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引用次数: 0
Local inhibition in a model of the indirect pathway globus pallidus network slows and deregularizes background firing, but sharpens and synchronizes responses to striatal input 局部抑制在间接通路白球网络模型减缓和解除背景放电,但增强和同步纹状体输入的反应
IF 1.2 4区 医学 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2022-03-11 DOI: 10.1007/s10827-022-00814-y
Erick Olivares, Matthew H. Higgs, Charles J. Wilson

The external segment of globus pallidus (GPe) is a network of oscillatory neurons connected by inhibitory synapses. We studied the intrinsic dynamic and the response to a shared brief inhibitory stimulus in a model GPe network. Individual neurons were simulated using a phase resetting model based on measurements from mouse GPe neurons studied in slices. The neurons showed a broad heterogeneity in their firing rates and in the shapes and sizes of their phase resetting curves. Connectivity in the network was set to match experimental measurements. We generated statistically equivalent neuron heterogeneity in a small-world model, in which 99% of connections were made with near neighbors and 1% at random, and in a model with entirely random connectivity. In both networks, the resting activity was slowed and made more irregular by the local inhibition, but it did not show any periodic pattern. Cross-correlations among neuron pairs were limited to directly connected neurons. When stimulated by a shared inhibitory input, the individual neuron responses separated into two groups: one with a short and stereotyped period of inhibition followed by a transient increase in firing probability, and the other responding with a sustained inhibition. Despite differences in firing rate, the responses of the first group of neurons were of fixed duration and were synchronized across cells.

苍白球外节(GPe)是一个由抑制性突触连接的振荡神经元网络。我们研究了GPe模型网络的内在动力学和对共同短暂抑制刺激的响应。利用基于小鼠GPe神经元切片测量的相位重置模型模拟单个神经元。神经元在放电速率和相位重置曲线的形状和大小上表现出广泛的异质性。网络中的连通性被设置为与实验测量相匹配。我们在一个小世界模型中生成了统计上等效的神经元异质性,其中99%的连接是与近邻建立的,1%是随机建立的,在一个完全随机连接的模型中。在这两个网络中,由于局部抑制,静息活动减慢并变得更加不规则,但它没有表现出任何周期性模式。神经元对之间的相互关系仅限于直接连接的神经元。当受到共同抑制输入的刺激时,单个神经元的反应分为两组:一组具有短而刻板的抑制期,随后是短暂的放电概率增加,另一组具有持续的抑制反应。尽管放电速率不同,但第一组神经元的反应是固定的,并且在细胞间是同步的。
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引用次数: 2
Correction to: 30th Annual Computational Neuroscience Meeting: CNS*2021-Meeting Abstracts. 修正:第30届计算神经科学年会:CNS*2021 -会议摘要
IF 1.2 4区 医学 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2022-03-10 DOI: 10.1007/s10827-022-00812-0
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引用次数: 0
Evaluating the extent to which homeostatic plasticity learns to compute prediction errors in unstructured neuronal networks 评估稳态可塑性在多大程度上学会计算非结构化神经元网络中的预测误差
IF 1.2 4区 医学 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2022-02-03 DOI: 10.1007/s10827-022-00820-0
Vicky Zhu, R. Rosenbaum
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引用次数: 0
Active intrinsic conductances in recurrent networks allow for long-lasting transients and sustained activity with realistic firing rates as well as robust plasticity. 循环神经网络中的主动固有电导允许长时间的瞬态和持续的活动,具有现实的放电率以及强大的可塑性。
IF 1.2 4区 医学 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2022-02-01 DOI: 10.1007/s10827-021-00797-2
Tuba Aksoy, Harel Z Shouval

Recurrent neural networks of spiking neurons can exhibit long lasting and even persistent activity. Such networks are often not robust and exhibit spike and firing rate statistics that are inconsistent with experimental observations. In order to overcome this problem most previous models had to assume that recurrent connections are dominated by slower NMDA type excitatory receptors. Usually, the single neurons within these networks are very simple leaky integrate and fire neurons or other low dimensional model neurons. However real neurons are much more complex, and exhibit a plethora of active conductances which are recruited both at the sub and supra threshold regimes. Here we show that by including a small number of additional active conductances we can produce recurrent networks that are both more robust and exhibit firing-rate statistics that are more consistent with experimental results. We show that this holds both for bi-stable recurrent networks, which are thought to underlie working memory and for slowly decaying networks which might underlie the estimation of interval timing. We also show that by including these conductances, such networks can be trained to using a simple learning rule to predict temporal intervals that are an order of magnitude larger than those that can be trained in networks of leaky integrate and fire neurons.

脉冲神经元的循环神经网络可以表现出持久甚至持久的活动。这样的网络通常不健壮,并且显示出与实验观察不一致的峰值和发射率统计数据。为了克服这个问题,大多数以前的模型不得不假设循环连接是由较慢的NMDA型兴奋性受体主导的。通常,这些网络中的单个神经元是非常简单的漏积分和火神经元或其他低维模型神经元。然而,真实的神经元要复杂得多,并且在阈下和阈上都有大量的活动传导。在这里,我们表明,通过包括少量额外的有源电导,我们可以产生更鲁棒的循环网络,并且显示出与实验结果更一致的发射率统计数据。我们表明,这既适用于双稳定循环网络,这被认为是工作记忆的基础,也适用于缓慢衰减的网络,这可能是间隔时间估计的基础。我们还表明,通过包括这些电导,这样的网络可以被训练成使用一个简单的学习规则来预测时间间隔,这个时间间隔比那些可以在泄漏集成和火神经元网络中训练的时间间隔大一个数量级。
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Journal of Computational Neuroscience
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