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“PEOPLE” MEET “MARKOVIANS” — INDIVIDUAL-BASED MODELING WITH HYBRID STOCHASTIC SYSTEMS "人 "与 "马尔可夫人"--基于个体的混合随机系统建模
IF 1.6 4区 数学 Q2 Agricultural and Biological Sciences Pub Date : 2024-04-18 DOI: 10.1142/s0218339023400028
Molly Hawker, Ivo Siekmann
Individual-based models (IBMs) enable modelers to avoid far-reaching abstractions and strong simplifications by allowing for a state-based representation of individuals. The fact that IBMs are not represented using a standardized mathematical framework such as differential equations makes it harder to reproduce IBMs and introduces difficulties in the analysis of IBMs. We propose a model architecture based on representing individuals via Markov models. Individuals are coupled to populations — for which individuals are not explicitly represented — that are modeled by differential equations. The resulting models consisting of continuous-time finite-state Markov models coupled to systems of differential equations are examples of piecewise-deterministic Markov processes (PDMPs). We will demonstrate that PDMPs, also known as hybrid stochastic systems, allow us to design detailed state-based representations of individuals which, at the same time, can be systematically analyzed by taking advantage of the theory of PDMPs. We will illustrate design and analysis of IBMs using PDMPs via the example of a predator that intermittently feeds on a logistically growing prey by stochastically switching between a resting and a feeding state. This simple model shows a surprisingly rich dynamics which, nevertheless, can be comprehensively analyzed using the theory of PDMPs.
基于个体的模型(IBMs)通过对个体进行基于状态的表示,使建模者能够避免意义深远的抽象和强烈的简化。基于个体的模型(IBMs)不使用微分方程等标准化数学框架来表示,这增加了 IBMs 的重现难度,也给 IBMs 的分析带来了困难。我们提出了一种基于马尔可夫模型表示个体的模型架构。个体与种群耦合--种群中的个体没有明确表示--种群由微分方程建模。由连续时间有限状态马尔可夫模型与微分方程系统耦合而成的模型是片断确定性马尔可夫过程(PDMP)的实例。我们将证明,PDMPs(也称为混合随机系统)允许我们设计详细的基于状态的个体表示,同时可以利用 PDMPs 理论对其进行系统分析。我们将以捕食者为例,说明如何利用 PDMPs 设计和分析 IBM,捕食者通过在休息状态和进食状态之间随机切换,间歇性地捕食逻辑上不断增长的猎物。这个简单的模型显示出令人惊讶的丰富动态,然而,我们可以利用 PDMPs 理论对其进行全面分析。
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引用次数: 1
IMPULSIVE DIFFERENTIAL EQUATION MODEL IN HIV-1 INHIBITION: ADVANCES IN DUAL INHIBITORS OF HIV-1 RT AND IN FOR THE PREVENTION OF HIV-1 REPLICATION 抑制 HIV-1 的脉冲微分方程模型:HIV-1 RT 和 HIV-1 复制预防双重抑制剂的研究进展
IF 1.6 4区 数学 Q2 Agricultural and Biological Sciences Pub Date : 2024-03-27 DOI: 10.1142/s0218339024500141
SRIJITA MONDAL, JAMES F. PETERS, PRIYANKA GHOSH, ASHIS KUMAR SARKAR, SOURAV KUMAR SASMAL

Reverse transcriptase (RT) and integrase (IN) are two pivotal enzymes in HIV-1 replication. RT converts the single-stranded viral RNA genome into double-stranded DNA and IN catalyzes the integration of viral double-stranded DNA into host DNA. Currently, dual inhibitors of HIV-1 RT and IN have become a hotspot in new anti-HIV drug research and development. A dual inhibitor of HIV-1 RT/IN does the same thing as the two independent drugs would do. In this paper, we develop a mathematical model comprising a system of nonlinear differential equations describing HIV-1 RT/IN catalyzed biochemical reactions based on Michaelis–Menten enzyme kinetic reaction. In the formulated model we incorporate HIV-1 RT/IN dual inhibitor which simultaneously works as a non-nucleoside RT inhibitor and IN inhibitor. To examine the efficacy of HIV-1 RT/IN dual inhibitor in the treatment of HIV-1 infection, we have introduced a one-dimensional impulsive differential equation model and determined an effective dosing regimen for applying the inhibitor numerically. Furthermore, the exact closed form solution of the impulsive differential equation model is carried out by using the Lambert W function and the local stability of the periodic solution is also obtained analytically. The results obtained from analytical as well as numerical studies provide a basic idea to investigate the minimum dose with the highest efficacy for administering HIV-1 RT/IN dual inhibitors to prevent HIV-1 infection.

逆转录酶(RT)和整合酶(IN)是 HIV-1 复制过程中的两种关键酶。RT 将单链病毒 RNA 基因组转化为双链 DNA,而 IN 则催化病毒双链 DNA 与宿主 DNA 的整合。目前,HIV-1 RT 和 IN 的双重抑制剂已成为抗 HIV 新药研发的热点。HIV-1 RT/IN 双抑制剂的作用与两种独立药物的作用相同。本文基于 Michaelis-Menten 酶动力学反应,建立了一个由非线性微分方程系统组成的数学模型,用于描述 HIV-1 RT/IN 催化的生化反应。在所建立的模型中,我们加入了 HIV-1 RT/IN 双抑制剂,该抑制剂同时作为非核苷类 RT 抑制剂和 IN 抑制剂发挥作用。为了研究 HIV-1 RT/IN 双抑制剂在治疗 HIV-1 感染中的疗效,我们引入了一维脉冲微分方程模型,并通过数值计算确定了应用该抑制剂的有效剂量方案。此外,我们还利用兰伯特 W 函数对脉冲微分方程模型进行了精确的闭式求解,并通过分析得到了周期解的局部稳定性。分析和数值研究得出的结果为研究使用 HIV-1 RT/IN 双抑制剂预防 HIV-1 感染的最小剂量和最高疗效提供了基本思路。
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引用次数: 0
DYNAMICS AND BLOW-UP CONTROL OF A LESLIE–GOWER PREDATOR–PREY MODEL WITH GROUP DEFENCE IN PREY 带有猎物群防的leslie-gower捕食者-猎物模型的动力学和爆炸控制
IF 1.6 4区 数学 Q2 Agricultural and Biological Sciences Pub Date : 2024-03-27 DOI: 10.1142/s0218339024500165
RAJESH RANJAN PATRA, SARIT MAITRA, SOUMEN KUNDU

In this paper, we designed a population model that shows how a prey species defends itself against a generalist predator by exhibiting group defence. A non-monotonic functional response is used to represent the group defence functionality. We have demonstrated the model’s local stability in the vicinity of the coexisting equilibrium solution employing a local Lyapunov function. Condition for existence of Hopf bifurcation is obtained along with its normal form. The suggested model has been validated by numerical simulations, which have also been used to verify the acquired analytical results. The parameters are subjected to sensitivity analysis by utilizing partial rank correlation coefficient (PRCC) and Latin hypercube sampling (LHS). The Z-type dynamic method is used to prevent population blow-up.

在本文中,我们设计了一个种群模型,展示了猎物物种如何通过群防来抵御通性捕食者。该模型采用非单调函数反应来表示群体防御功能。我们利用局部 Lyapunov 函数证明了该模型在共存平衡解附近的局部稳定性。我们还获得了霍普夫分岔的存在条件及其正常形式。所建议的模型已通过数值模拟进行了验证,数值模拟也用于验证所获得的分析结果。利用部分秩相关系数(PRCC)和拉丁超立方采样(LHS)对参数进行了敏感性分析。采用 Z 型动态方法来防止群体膨胀。
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引用次数: 0
Dynamics of Delayed Autonomous Model with Carry-Over Effects, Including Prey Harvesting 包括猎物捕获在内的具有延续效应的延迟自主模型的动力学特性
IF 1.6 4区 数学 Q2 Agricultural and Biological Sciences Pub Date : 2024-03-14 DOI: 10.1142/s0218339024500268
Mahendra, Dwijendra N. Pandey
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引用次数: 0
Exploring the Impact of PTH Therapy on Bone Remodeling: A Mathematical Investigation 探索 PTH 疗法对骨重塑的影响:数学研究
IF 1.6 4区 数学 Q2 Agricultural and Biological Sciences Pub Date : 2024-03-14 DOI: 10.1142/s021833902450027x
Amrutha Sreekumar, Koyel Chakravarty
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引用次数: 0
Effect of Delay in a Musca Domestica Houseflies Model: Stability and Global Hopf Bifurcation 家蝇模型中延迟的影响:稳定性和全局霍普夫分岔
IF 1.6 4区 数学 Q2 Agricultural and Biological Sciences Pub Date : 2024-03-14 DOI: 10.1142/s0218339024500281
Xin Zhang, Renxiang Shi
. The houseflies model with discrete delay is studied in both theoretical and numerical ways. The solution of the delayed system is positive and bounded. Choosing the delay as the bifurcation parameter, stability analysis for the positive equilibrium of the delayed model, local and global Hopf bifurcation are given in theoretical aspect. Dynamical behaviors such as supercritical Hopf bifurcation is detected by computer simulations. The theoretical analysis and numerical observations in this work are interesting in biomathematics research area.
.本文从理论和数值两方面研究了具有离散延迟的房屋模型。延迟系统的解是正的和有界的。选择延迟作为分岔参数,从理论方面给出了延迟模型正平衡、局部和全局霍普夫分岔的稳定性分析。通过计算机模拟检测了超临界霍普夫分岔等动力学行为。这项工作中的理论分析和数值观测在生物数学研究领域很有意义。
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引用次数: 0
Transmission Dynamics of COVID-19 with Diabetes in India: A Cost-Effective and Optimal Control Analysis COVID-19 糖尿病在印度的传播动态:成本效益和最佳控制分析
IF 1.6 4区 数学 Q2 Agricultural and Biological Sciences Pub Date : 2024-03-14 DOI: 10.1142/s0218339024500232
Jai Prakash Tripathi, Nitesh Kumawat, Komal Tanwar, Dhanumjaya Palla, M. Martcheva
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引用次数: 0
Asymptotic stability for a free boundary model of an atherosclerotic plaque formation in the presence of reverse cholesterol transport with Holling type III functional response 具有霍林 III 型功能响应的胆固醇反向运输作用下动脉粥样硬化斑块形成的自由边界模型的渐近稳定性
IF 1.6 4区 数学 Q2 Agricultural and Biological Sciences Pub Date : 2024-03-14 DOI: 10.1142/s0218339024500244
Wenjun Liu, Li Zhang, Yanning An
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引用次数: 0
Dynamics of Leptospirosis in Human and Rodent Populations: A Multiscale Modelling Approach 人类和啮齿动物种群中的钩端螺旋体病动态:多尺度建模方法
IF 1.6 4区 数学 Q2 Agricultural and Biological Sciences Pub Date : 2024-03-14 DOI: 10.1142/s0218339024500220
M. O. Adewole, Farah A. Abdullah, Majid K. M. Ali
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引用次数: 0
Exploring Fractional Dynamical Probes in the Context of Gender-Structured HIV-TB Coinfection: A Study of Control Strategies 在性别结构的艾滋病-结核病双重感染背景下探索分数动态探针:控制策略研究
IF 1.6 4区 数学 Q2 Agricultural and Biological Sciences Pub Date : 2024-03-14 DOI: 10.1142/s0218339024500256
A. Saranya Devi, K. Pal, Pankaj Kumar Tiwari
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引用次数: 0
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