Pub Date : 2025-12-10DOI: 10.1186/s13620-025-00318-y
Lianjie Wei, Edgar Garcia Manzanilla, Alberto Allepuz Palau, Carla Correia-Gomes
Background: Biosecurity measures are essential to prevent the introduction and spread of pathogens within (internal biosecurity) and between (external biosecurity) broiler farms. Implementing effective biosecurity practices not only protects animal health but also enhances productivity, welfare, and farm sustainability in general. This study assesses the temporal trends in biosecurity scores in Irish broiler farms from 2019 to 2023 using the Biocheck.UGent tool and identifies areas for improvement. The analysis includes data from 403 broiler farms, as well as recommendations provided by private veterinary practitioners (PVPs) to enhance biosecurity.
Results: The results show an overall upward trend in biosecurity scores over the study period. Internal biosecurity scores were consistently higher than external scores. Median internal scores increased from 60 (over 100) in 2019 to 75 in 2023 (P < 0.05). External scores increased from 50 to 65 in the same period (P < 0.05). Farms that underwent at least three assessments showed increases in median total scores of roughly 10 points after the first visit (P < 0.05). However, certain biosecurity categories, particularly cleaning and disinfection with medians over years remaining below 70, received consistently low scores despite frequent recommendations for improvement by the PVPs.
Conclusions: The findings suggest that, while progress has been made, further efforts are needed to enhance biosecurity practices, particularly in areas with persistent low scores, such as depopulation of broilers and cleaning and disinfection. PVPs should provide more targeted recommendations for these categories and support farmers in effectively implementing these practices.
{"title":"Assessing structural and reported biosecurity measures in Irish broiler farms from 2019 to 2023.","authors":"Lianjie Wei, Edgar Garcia Manzanilla, Alberto Allepuz Palau, Carla Correia-Gomes","doi":"10.1186/s13620-025-00318-y","DOIUrl":"10.1186/s13620-025-00318-y","url":null,"abstract":"<p><strong>Background: </strong>Biosecurity measures are essential to prevent the introduction and spread of pathogens within (internal biosecurity) and between (external biosecurity) broiler farms. Implementing effective biosecurity practices not only protects animal health but also enhances productivity, welfare, and farm sustainability in general. This study assesses the temporal trends in biosecurity scores in Irish broiler farms from 2019 to 2023 using the Biocheck.UGent tool and identifies areas for improvement. The analysis includes data from 403 broiler farms, as well as recommendations provided by private veterinary practitioners (PVPs) to enhance biosecurity.</p><p><strong>Results: </strong>The results show an overall upward trend in biosecurity scores over the study period. Internal biosecurity scores were consistently higher than external scores. Median internal scores increased from 60 (over 100) in 2019 to 75 in 2023 (P < 0.05). External scores increased from 50 to 65 in the same period (P < 0.05). Farms that underwent at least three assessments showed increases in median total scores of roughly 10 points after the first visit (P < 0.05). However, certain biosecurity categories, particularly cleaning and disinfection with medians over years remaining below 70, received consistently low scores despite frequent recommendations for improvement by the PVPs.</p><p><strong>Conclusions: </strong>The findings suggest that, while progress has been made, further efforts are needed to enhance biosecurity practices, particularly in areas with persistent low scores, such as depopulation of broilers and cleaning and disinfection. PVPs should provide more targeted recommendations for these categories and support farmers in effectively implementing these practices.</p>","PeriodicalId":54916,"journal":{"name":"Irish Veterinary Journal","volume":" ","pages":"9"},"PeriodicalIF":3.1,"publicationDate":"2025-12-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145727220","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-04DOI: 10.1186/s13620-025-00326-y
Youngwoo Jung, Byoungsoo Kim, Ji-Yeong Ku, Youngjun Kim, Kwang-Man Park, Jonghun Baek, Ji-Seon Yoon, DoHyeon Yu, John F Mee, Jinho Park
Neonatal weak calf syndrome (NWCS) is characterized by reduced vigour in neonatal calves, leading to difficulties in standing and suckling. This study aimed to evaluate whether serum selenium and Vitamin E (VE) concentrations were associated with NWCS. The study included 29 indigenous Korean (Hanwoo) beef calves: 10 healthy and 19 weak (14 surviving, 5 non-surviving), based on standing and suckling ability. These calves were recruited from 19 farms. Healthy calves suckled an adequate volume of colostrum while weak calves (who suckled inadequately) were fed 1-2 L of frozen colostrum or colostrum replacer; all within 2 h of birth. One blood sample was collected from each calf at least 4 h after last feeding (within 18 h after birth), and serum selenium and VE concentrations were analysed. The results showed no significant difference in serum selenium concentrations between healthy and weak calves but, VE concentrations were significantly lower (and deficient) in weak calves. Among the weak calves, non-survivors also showed numerically lower levels than survivors. These findings suggest an association between calf blood VE concentrations and NWCS but not with calf blood selenium concentrations. It is hypothesised that the NWCS was caused by foetal VE deficiency as despite additional colostrum feeding weak calves (NWCS) still had significantly lower postcolostral serum VE concentrations than healthy calves. As VE is involved in muscle function, immunity, and oxidative stress regulation, ensuring adequate maternal VE supplementation and timely colostrum intake may help reduce both the impact of VE deficiency on NWCS and the impact of NWCS on VE status in calves with low maternal-foetal VE reserves where prompt colostrum feeding is not practised, as is often the case with beef calves.
{"title":"Serum selenium and vitamin E concentrations in indigenous Korean calves with neonatal weak calf syndrome.","authors":"Youngwoo Jung, Byoungsoo Kim, Ji-Yeong Ku, Youngjun Kim, Kwang-Man Park, Jonghun Baek, Ji-Seon Yoon, DoHyeon Yu, John F Mee, Jinho Park","doi":"10.1186/s13620-025-00326-y","DOIUrl":"10.1186/s13620-025-00326-y","url":null,"abstract":"<p><p>Neonatal weak calf syndrome (NWCS) is characterized by reduced vigour in neonatal calves, leading to difficulties in standing and suckling. This study aimed to evaluate whether serum selenium and Vitamin E (VE) concentrations were associated with NWCS. The study included 29 indigenous Korean (Hanwoo) beef calves: 10 healthy and 19 weak (14 surviving, 5 non-surviving), based on standing and suckling ability. These calves were recruited from 19 farms. Healthy calves suckled an adequate volume of colostrum while weak calves (who suckled inadequately) were fed 1-2 L of frozen colostrum or colostrum replacer; all within 2 h of birth. One blood sample was collected from each calf at least 4 h after last feeding (within 18 h after birth), and serum selenium and VE concentrations were analysed. The results showed no significant difference in serum selenium concentrations between healthy and weak calves but, VE concentrations were significantly lower (and deficient) in weak calves. Among the weak calves, non-survivors also showed numerically lower levels than survivors. These findings suggest an association between calf blood VE concentrations and NWCS but not with calf blood selenium concentrations. It is hypothesised that the NWCS was caused by foetal VE deficiency as despite additional colostrum feeding weak calves (NWCS) still had significantly lower postcolostral serum VE concentrations than healthy calves. As VE is involved in muscle function, immunity, and oxidative stress regulation, ensuring adequate maternal VE supplementation and timely colostrum intake may help reduce both the impact of VE deficiency on NWCS and the impact of NWCS on VE status in calves with low maternal-foetal VE reserves where prompt colostrum feeding is not practised, as is often the case with beef calves.</p>","PeriodicalId":54916,"journal":{"name":"Irish Veterinary Journal","volume":" ","pages":"5"},"PeriodicalIF":3.1,"publicationDate":"2025-12-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12781326/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145670810","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-03DOI: 10.1186/s13620-025-00324-0
James O'Shaughnessy, Nicola Harvey, Brian Byrne, Máire McElroy, Montserrat Gutierrez, Declan Murphy, Kevin Kenny, Henrietta Cameron, Deirdre Prendergast, Rebecca Cupial, Margaret Goggin, Lionel Kenneth Dygico, Jordy Smith, Jamie A Tratalos, Ryan Devaney, Purnika Ranasinghe, Tara Ardis, Adrian Allen, Guy McGrath, Stephen V Gordon, Damien Farrell
Background: Bovine tuberculosis (bTB), caused primarily by Mycobacterium bovis, remains a major challenge across the island of Ireland. Despite decades of an eradication programme that encompasses cattle testing, movement restrictions, and badger culling, bTB prevalence has increased in recent years. The epidemiology of bTB is complex, with inter-species (e.g. badger-cattle) and intra-species (e.g. cattle-cattle) transmission of infection. This study utilised whole-genome sequencing (WGS) to investigate the genetic diversity and spatial distribution of M. bovis across the island of Ireland as a route to help elucidate transmission of infection.
Results: A total of 5,875 M. bovis isolates from cattle and badgers were analysed to identify strain diversity, geographic clustering, and patterns of strain sharing within and between host species. Our findings reveal significant regional variation in strain distribution, with certain clades predominantly confined to specific regions, while others are more widely dispersed. Strong genetic similarities between cattle and badger isolates support the role of badgers as infection reservoirs. Furthermore, a subset of herds contained multi-strain infections and amongst these herds there were 'controlled finishing units' (CFUs), where infection was more likely driven by inward cattle movements than local transmission.
Conclusions: By integrating phylogenetic analysis with spatial mapping and cattle movement data, this study provides new insights into M. bovis transmission pathways and highlights the value of WGS in refining Ireland's bTB control strategies.
{"title":"The genomic diversity and spatial patterns of Mycobacterium bovis in Ireland revealed by whole genome sequencing.","authors":"James O'Shaughnessy, Nicola Harvey, Brian Byrne, Máire McElroy, Montserrat Gutierrez, Declan Murphy, Kevin Kenny, Henrietta Cameron, Deirdre Prendergast, Rebecca Cupial, Margaret Goggin, Lionel Kenneth Dygico, Jordy Smith, Jamie A Tratalos, Ryan Devaney, Purnika Ranasinghe, Tara Ardis, Adrian Allen, Guy McGrath, Stephen V Gordon, Damien Farrell","doi":"10.1186/s13620-025-00324-0","DOIUrl":"10.1186/s13620-025-00324-0","url":null,"abstract":"<p><strong>Background: </strong>Bovine tuberculosis (bTB), caused primarily by Mycobacterium bovis, remains a major challenge across the island of Ireland. Despite decades of an eradication programme that encompasses cattle testing, movement restrictions, and badger culling, bTB prevalence has increased in recent years. The epidemiology of bTB is complex, with inter-species (e.g. badger-cattle) and intra-species (e.g. cattle-cattle) transmission of infection. This study utilised whole-genome sequencing (WGS) to investigate the genetic diversity and spatial distribution of M. bovis across the island of Ireland as a route to help elucidate transmission of infection.</p><p><strong>Results: </strong>A total of 5,875 M. bovis isolates from cattle and badgers were analysed to identify strain diversity, geographic clustering, and patterns of strain sharing within and between host species. Our findings reveal significant regional variation in strain distribution, with certain clades predominantly confined to specific regions, while others are more widely dispersed. Strong genetic similarities between cattle and badger isolates support the role of badgers as infection reservoirs. Furthermore, a subset of herds contained multi-strain infections and amongst these herds there were 'controlled finishing units' (CFUs), where infection was more likely driven by inward cattle movements than local transmission.</p><p><strong>Conclusions: </strong>By integrating phylogenetic analysis with spatial mapping and cattle movement data, this study provides new insights into M. bovis transmission pathways and highlights the value of WGS in refining Ireland's bTB control strategies.</p>","PeriodicalId":54916,"journal":{"name":"Irish Veterinary Journal","volume":" ","pages":"6"},"PeriodicalIF":3.1,"publicationDate":"2025-12-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12781239/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145670923","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01DOI: 10.1186/s13620-025-00304-4
Huma Fatima, Shawana Qayyum, Shazia Shams, Maryam Khan, Nargis Shaheen, Atiya Iqbal, Adil Khan, Ioannis A Giantsis, Ayman A Swelum
Anaplasma is an obligate intracellular bacterium that cause anaplasmosis. The two species of Anaplasma namely Anaplasma marginale and Anaplasma centrale affects cattle, buffaloes, sheep, goats and wild ruminants. This rickettsial microorganism, which is transmitted by ticks, is causing massive economic losses due to weight loss, decreased milk supply, severe anemia and high mortality. The research study was conducted between May 2023 to April 2024 to determine the prevalence, symptomatic analysis of anaplasmosis and associated study of milk reduction in cattle from district Nowshera, KP, Pakistan. Total 635 blood specimens were obtained from different cattle herds coming from 17 farms. Such blood specimens underwent microscopic examination by using Giemsa-stained blood smears and troughs molecular analysis by PCR targeting the msp1b gene (265 bp fragment) in order to detect A. marginale. All relevant statistical analyses, including Chi-square tests, were carried out with SPSS to test for significance (p < 0.05). Combining microscopy and PCR, the overall prevalence of A. marginale was determined to be 13.3% (n = 85) and 12.7% (n = 81) respectively. Age-wise prevalence revealed that younger cattle (< 5 years) had significantly higher infection rates 62.3% (n = 53) as compared to older cattle (> 5 years) 37.6% (n = 32), with a p-value of 0.037. Of the PCR-positive cases, 64.1% (n = 52) were from younger cattle and 35.8% (n = 29) were from older cattle. A potential cause for the relatively low PCR positivity in comparison to microscopic identification is that certain false-positive microscopic identifications based on Heinz bodies or other blood artifacts as Anaplasma species may be involved. Naturally, PCR would only target the genetic material of the actual disease. Microscopy showed that prevalence peaked in the month of July at 24.7%, while PCR recorded peak prevalence in June at 33.3%. There were no confirmed cases in January and February, confirming that the differences in seasonal prevalence were statistically significant (p < 0.05). In terms of production loss, one-year-old Holstein cows experienced a 47% reduction in milk yield post-infection (from 17 L to 9 L), while cows 2 to 7 years-old exhibited reductions ranging from 50 to 75%, all statistically significant. It was concluded that anaplasmosis was widely distributed in district Nowshera and it is high economic losses on dairy farm. Further research is needed to develop control measures and to improve understanding of the disease transmission.
{"title":"Molecular epidemiology, symptomatic analysis of anaplasmosis and associated study of milk reduction in cattle from district Nowshera, KP, Pakistan.","authors":"Huma Fatima, Shawana Qayyum, Shazia Shams, Maryam Khan, Nargis Shaheen, Atiya Iqbal, Adil Khan, Ioannis A Giantsis, Ayman A Swelum","doi":"10.1186/s13620-025-00304-4","DOIUrl":"10.1186/s13620-025-00304-4","url":null,"abstract":"<p><p>Anaplasma is an obligate intracellular bacterium that cause anaplasmosis. The two species of Anaplasma namely Anaplasma marginale and Anaplasma centrale affects cattle, buffaloes, sheep, goats and wild ruminants. This rickettsial microorganism, which is transmitted by ticks, is causing massive economic losses due to weight loss, decreased milk supply, severe anemia and high mortality. The research study was conducted between May 2023 to April 2024 to determine the prevalence, symptomatic analysis of anaplasmosis and associated study of milk reduction in cattle from district Nowshera, KP, Pakistan. Total 635 blood specimens were obtained from different cattle herds coming from 17 farms. Such blood specimens underwent microscopic examination by using Giemsa-stained blood smears and troughs molecular analysis by PCR targeting the msp1b gene (265 bp fragment) in order to detect A. marginale. All relevant statistical analyses, including Chi-square tests, were carried out with SPSS to test for significance (p < 0.05). Combining microscopy and PCR, the overall prevalence of A. marginale was determined to be 13.3% (n = 85) and 12.7% (n = 81) respectively. Age-wise prevalence revealed that younger cattle (< 5 years) had significantly higher infection rates 62.3% (n = 53) as compared to older cattle (> 5 years) 37.6% (n = 32), with a p-value of 0.037. Of the PCR-positive cases, 64.1% (n = 52) were from younger cattle and 35.8% (n = 29) were from older cattle. A potential cause for the relatively low PCR positivity in comparison to microscopic identification is that certain false-positive microscopic identifications based on Heinz bodies or other blood artifacts as Anaplasma species may be involved. Naturally, PCR would only target the genetic material of the actual disease. Microscopy showed that prevalence peaked in the month of July at 24.7%, while PCR recorded peak prevalence in June at 33.3%. There were no confirmed cases in January and February, confirming that the differences in seasonal prevalence were statistically significant (p < 0.05). In terms of production loss, one-year-old Holstein cows experienced a 47% reduction in milk yield post-infection (from 17 L to 9 L), while cows 2 to 7 years-old exhibited reductions ranging from 50 to 75%, all statistically significant. It was concluded that anaplasmosis was widely distributed in district Nowshera and it is high economic losses on dairy farm. Further research is needed to develop control measures and to improve understanding of the disease transmission.</p>","PeriodicalId":54916,"journal":{"name":"Irish Veterinary Journal","volume":" ","pages":"4"},"PeriodicalIF":3.1,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12777492/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145656118","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01DOI: 10.1186/s13620-025-00321-3
Nicola Harvey, Guy McGrath, James O'Shaughnessy, Jamie A Tratalos, Brian Byrne, Adrian Allen, Robin Skuce, Kevin Kenny, Stephen V Gordon, Damien Farrell
{"title":"Integrating whole-genome sequencing and epidemiology to characterise Mycobacterium bovis transmission in Ireland: a proof of concept.","authors":"Nicola Harvey, Guy McGrath, James O'Shaughnessy, Jamie A Tratalos, Brian Byrne, Adrian Allen, Robin Skuce, Kevin Kenny, Stephen V Gordon, Damien Farrell","doi":"10.1186/s13620-025-00321-3","DOIUrl":"10.1186/s13620-025-00321-3","url":null,"abstract":"","PeriodicalId":54916,"journal":{"name":"Irish Veterinary Journal","volume":" ","pages":"3"},"PeriodicalIF":3.1,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12771759/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145656134","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-29DOI: 10.1186/s13620-025-00323-1
Hannah Dane, Brendan Gilbride, Minu Thomas, Irene R Grant
Accurate diagnosis of Bovine Tuberculosis (bTB) in cattle is important for success of eradication programmes, but the current reliance on the single intradermal comparative cervical tuberculin (SICCT) test is not achieving disease eradication in all jurisdictions, including Northern Ireland (NI). In this study, a novel Phagomagnetic separation (PhMS)-qPCR assay to rapidly detect viable Mycobacterium bovis in bovine blood samples was evaluated. A total of 149 heart blood samples were collected from cattle at exsanguination point of the slaughter line at a NI abattoir between June and August 2023 - 74 from TB reactor cattle (compulsorily culled within days of a positive SICCT test result) and 75 from routine slaughter cattle (< 30 months). Peripheral blood mononuclear cells (PBMCs) were isolated and lysed to release any mycobacteria present before PhMS-qPCR and culture were performed to detect presence of viable M. bovis. The DNAs obtained were subsequently tested for evidence of viable Mycobacterium avium subsp. paratuberculosis (MAP) also. PhMS-qPCR results indicate that of the TB reactor cattle with conclusive PhMS-qPCR results, 7.5% of bloods tested positive for viable M. bovis only, 41.8% for viable MAP only and 28.4% showed evidence of co-infection (both M. bovis and MAP detected). Of the routine slaughter cattle with conclusive PhMS-qPCR results, 22.4% of bloods tested positive for viable M. bovis only, 19.4% for viable MAP only and 20.9% showed evidence of co-infection. Of the blood samples with conclusive culture results, 19.6% TB reactors and 25.4% routine slaughter cattle were M. bovis culture positive. No agreement was observed between the M. bovis PhMS-qPCR assay and M. bovis culture results (Kappa - 0.028, 95% CI -0.162 to 0.105). Results of this study provide proof-of-concept that the PhMS-qPCR assay is able to detect viable M. bovis in bovine blood, although a different qPCR assay with greater detection sensitivity will need to be identified going forward. A surprisingly high number of M. bovis/MAP co-infections were detected in the blood of NI cattle, which may be contributing to failure of the bTB eradication scheme. The latter warrants further investigation.
{"title":"Evidence of mycobacteriaemias and mycobacterial co-infections uncovered in cattle at slaughter using a novel phage-based PhMS-qPCR assay for viable Mycobacterium bovis and Mycobacterium avium subsp. paratuberculosis.","authors":"Hannah Dane, Brendan Gilbride, Minu Thomas, Irene R Grant","doi":"10.1186/s13620-025-00323-1","DOIUrl":"10.1186/s13620-025-00323-1","url":null,"abstract":"<p><p>Accurate diagnosis of Bovine Tuberculosis (bTB) in cattle is important for success of eradication programmes, but the current reliance on the single intradermal comparative cervical tuberculin (SICCT) test is not achieving disease eradication in all jurisdictions, including Northern Ireland (NI). In this study, a novel Phagomagnetic separation (PhMS)-qPCR assay to rapidly detect viable Mycobacterium bovis in bovine blood samples was evaluated. A total of 149 heart blood samples were collected from cattle at exsanguination point of the slaughter line at a NI abattoir between June and August 2023 - 74 from TB reactor cattle (compulsorily culled within days of a positive SICCT test result) and 75 from routine slaughter cattle (< 30 months). Peripheral blood mononuclear cells (PBMCs) were isolated and lysed to release any mycobacteria present before PhMS-qPCR and culture were performed to detect presence of viable M. bovis. The DNAs obtained were subsequently tested for evidence of viable Mycobacterium avium subsp. paratuberculosis (MAP) also. PhMS-qPCR results indicate that of the TB reactor cattle with conclusive PhMS-qPCR results, 7.5% of bloods tested positive for viable M. bovis only, 41.8% for viable MAP only and 28.4% showed evidence of co-infection (both M. bovis and MAP detected). Of the routine slaughter cattle with conclusive PhMS-qPCR results, 22.4% of bloods tested positive for viable M. bovis only, 19.4% for viable MAP only and 20.9% showed evidence of co-infection. Of the blood samples with conclusive culture results, 19.6% TB reactors and 25.4% routine slaughter cattle were M. bovis culture positive. No agreement was observed between the M. bovis PhMS-qPCR assay and M. bovis culture results (Kappa - 0.028, 95% CI -0.162 to 0.105). Results of this study provide proof-of-concept that the PhMS-qPCR assay is able to detect viable M. bovis in bovine blood, although a different qPCR assay with greater detection sensitivity will need to be identified going forward. A surprisingly high number of M. bovis/MAP co-infections were detected in the blood of NI cattle, which may be contributing to failure of the bTB eradication scheme. The latter warrants further investigation.</p>","PeriodicalId":54916,"journal":{"name":"Irish Veterinary Journal","volume":" ","pages":"2"},"PeriodicalIF":3.1,"publicationDate":"2025-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12772088/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145643143","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-26DOI: 10.1186/s13620-025-00319-x
Anna Domosławska, Anna Rapacz-Leonard, Andrzej Jurczak
{"title":"Spontaneous uterine rupture and extrauterine pregnancy in a bitch year after unsupervised parturition.","authors":"Anna Domosławska, Anna Rapacz-Leonard, Andrzej Jurczak","doi":"10.1186/s13620-025-00319-x","DOIUrl":"10.1186/s13620-025-00319-x","url":null,"abstract":"","PeriodicalId":54916,"journal":{"name":"Irish Veterinary Journal","volume":" ","pages":"1"},"PeriodicalIF":3.1,"publicationDate":"2025-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12764055/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145643138","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-25DOI: 10.1186/s13620-025-00316-0
Lisa Buckley, Aideen Kennedy, Maresa Sheehan, Mícheál Casey, Rob Doyle, Elizabeth A Lane
Background: Since the abolition of EU milk quotas in 2015, the Irish dairy industry has expanded with a 16.6% increase in calf births since 2011. Calf losses have major implications for the economic viability and sustainability of dairy enterprises. There is a paucity of literature on mortality in calves from birth to six months, particularly at a national herd level. Previous studies have tended to focus on herd size as a risk factor for calf mortality rather than the possible influence of herd expansion. The purpose of this study is to quantify any association between dairy herd expansion and the risk of being classified as a high or low calf mortality herd based on analysis of national dairy herd identification and movement records in Ireland from 2016-2020.
Results: In calves aged under 6 months, herds that expanded > 20% (OR 1.23 95% CI: 1.10-1.37, p < 0.001) and > 45% (OR 1.22, 95% CI:1.09-1.36, p = 0.001), were more likely to have > 10% herd calf mortality, compared to herds that did not increase in size. Newly established herds were more likely to have poor mortality outcomes (OR 2.44, 95% CI: 1.82-3.29, p < 0.001) compared to herds that did not increase in size. Herd expansion < 20% was not associated with mortality outcome. Herd ordinal location and herd size were significant risk factors for > 10% herd calf mortality.
Conclusion: This study has demonstrated that herds that have expanded > 20% over five years and newly established herds were more likely to have poor mortality outcomes. It suggests that new entrants into dairy farming may benefit from targeted emphasis on herd health management. The results also highlight the value of national data as a tool to determine optimisation of farm interventions and surveillance and policy decisions to prioritise animal health and welfare.
背景:自2015年欧盟取消牛奶配额以来,爱尔兰乳制品行业已经扩大,自2011年以来小牛出生率增加了16.6%。小牛的损失对乳品企业的经济生存能力和可持续性具有重大影响。关于小牛从出生到6个月的死亡率的文献很少,特别是在国家牧群水平上。以前的研究倾向于将群体规模作为小牛死亡的风险因素,而不是群体扩张的可能影响。本研究的目的是根据2016-2020年爱尔兰全国奶牛群识别和移动记录的分析,量化奶牛群扩张与小牛死亡率高或低的风险之间的任何关联。结果:在6个月以下的小牛中,与没有增加大小的牛群相比,扩大> 20%的牛群(OR 1.23 95% CI: 1.10-1.37, p 45% (OR 1.22, 95% CI:1.09-1.36, p = 0.001)更有可能有> 10%的牛群死亡率。新建立的畜群更可能有较差的死亡率结果(OR 2.44, 95% CI: 1.82-3.29, p 10%的畜群小牛死亡率)。结论:这项研究表明,在五年内扩大了20%的畜群和新建立的畜群更有可能出现较低的死亡率。这表明,新进入奶牛养殖业的人可能会受益于有针对性地强调牛群健康管理。研究结果还强调了国家数据作为一种工具的价值,可以确定农场干预措施的优化,以及优先考虑动物健康和福利的监测和政策决定。
{"title":"A retrospective cross-sectional study of Irish national dairy calf mortality data; 2016-2020.","authors":"Lisa Buckley, Aideen Kennedy, Maresa Sheehan, Mícheál Casey, Rob Doyle, Elizabeth A Lane","doi":"10.1186/s13620-025-00316-0","DOIUrl":"10.1186/s13620-025-00316-0","url":null,"abstract":"<p><strong>Background: </strong>Since the abolition of EU milk quotas in 2015, the Irish dairy industry has expanded with a 16.6% increase in calf births since 2011. Calf losses have major implications for the economic viability and sustainability of dairy enterprises. There is a paucity of literature on mortality in calves from birth to six months, particularly at a national herd level. Previous studies have tended to focus on herd size as a risk factor for calf mortality rather than the possible influence of herd expansion. The purpose of this study is to quantify any association between dairy herd expansion and the risk of being classified as a high or low calf mortality herd based on analysis of national dairy herd identification and movement records in Ireland from 2016-2020.</p><p><strong>Results: </strong>In calves aged under 6 months, herds that expanded > 20% (OR 1.23 95% CI: 1.10-1.37, p < 0.001) and > 45% (OR 1.22, 95% CI:1.09-1.36, p = 0.001), were more likely to have > 10% herd calf mortality, compared to herds that did not increase in size. Newly established herds were more likely to have poor mortality outcomes (OR 2.44, 95% CI: 1.82-3.29, p < 0.001) compared to herds that did not increase in size. Herd expansion < 20% was not associated with mortality outcome. Herd ordinal location and herd size were significant risk factors for > 10% herd calf mortality.</p><p><strong>Conclusion: </strong>This study has demonstrated that herds that have expanded > 20% over five years and newly established herds were more likely to have poor mortality outcomes. It suggests that new entrants into dairy farming may benefit from targeted emphasis on herd health management. The results also highlight the value of national data as a tool to determine optimisation of farm interventions and surveillance and policy decisions to prioritise animal health and welfare.</p>","PeriodicalId":54916,"journal":{"name":"Irish Veterinary Journal","volume":"78 1","pages":"31"},"PeriodicalIF":3.1,"publicationDate":"2025-11-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12648996/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145607402","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-20DOI: 10.1186/s13620-025-00315-1
Miriam Casey-Bryars, Jamie A Tratalos, Jamie M Madden, Guy McGrath
{"title":"Preparation for a potential outbreak of bluetongue virus in Ireland: surveillance design to estimate local prevalence after an initial case detection.","authors":"Miriam Casey-Bryars, Jamie A Tratalos, Jamie M Madden, Guy McGrath","doi":"10.1186/s13620-025-00315-1","DOIUrl":"10.1186/s13620-025-00315-1","url":null,"abstract":"","PeriodicalId":54916,"journal":{"name":"Irish Veterinary Journal","volume":"78 1","pages":"30"},"PeriodicalIF":3.1,"publicationDate":"2025-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12631999/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145565515","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}