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Antimicrobial resistance in Escherichia coli isolated from on-farm and conventional hatching broiler farms in Ireland 从爱尔兰农场和传统孵化肉鸡农场分离的大肠杆菌的抗菌素耐药性
IF 2.9 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2022-04-22 DOI: 10.1186/s13620-022-00214-9
Noelle Byrne, Lorcan O’Neill, Julia Adriana Calderόn Dίaz, E. Manzanilla, Ana P. Vale, F. Leonard
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引用次数: 4
The Irish cattle population structured by enterprise type: overview, trade & trends 爱尔兰牛种群结构的企业类型:概述,贸易和趋势
IF 2.9 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2022-04-04 DOI: 10.1186/s13620-022-00212-x
Jonas Brock, M. Lange, J. Tratalos, Natascha V. Meunier, M. Guelbenzu-Gonzalo, S. More, H. Thulke, D. Graham
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引用次数: 1
Serotyping, antibiogram, and detection of bacterial pathogens associated with bovine respiratory disease in selected areas of Ethiopia 埃塞俄比亚选定地区与牛呼吸道疾病相关的血清分型、抗生素谱和细菌病原体检测
IF 2.9 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2022-03-03 DOI: 10.1186/s13620-022-00210-z
Mirtneh Akalu, B. Vemulapati, T. Abayneh, T. Degefa, Getaw Deresse, E. Gelaye
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引用次数: 1
Engaging with selective dry cow therapy: understanding the barriers and facilitators perceived by Irish farmers. 参与选择性干牛疗法:了解爱尔兰牧场主认为的障碍和促进因素。
IF 2.9 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2021-10-23 DOI: 10.1186/s13620-021-00207-0
Sarah Huey, Michaela Kavanagh, Aine Regan, Moira Dean, Clare McKernan, Finola McCoy, Eoin G Ryan, Javier Caballero-Villalobos, Catherine I McAloon

Background: Selective dry cow therapy (SDCT) is widely promoted in dairy farming as a method to reduce antimicrobial usage. New legislation introduced by the European Union will restrict and regulate the prophylactic and metaphylactic use of antibiotics from January 2022. Blanket dry cow therapy continues to be a practice engaged in by many farmers in Ireland and for many of these farmers, moving towards SDCT would require a significant infrastructural, behavioural and/or cultural change on their farm. Existing research has reported the important need to understand farmers' motivations to initiate any substantial behaviour change. However, it is currently unknown what farmers know, think and believe about SDCT in Ireland. The aim of this study was to use qualitative methods to explore what barriers and facilitators farmers perceived to exist with SDCT and explore if they had chosen to implement SDCT after voluntarily participating in a funded dry cow consult with a trained veterinarian, with the objective of maximising the dry period udder health performance and moving safely to SDCT.

Results: In this study, 19 farmers were contacted, and telephone interviews were conducted regarding farmers' beliefs about the consequences of SDCT. Audio recordings were professionally transcribed verbatim and analysed qualitatively using an inductive thematic analysis. The analysis identified 6 barriers and 6 facilitators to implementing SDCT. A significant fear of increasing mastitis incidence was evident that caused reluctance towards SDCT and reliance on antibiotics. Mixed perceptions on SDCT, infrastructure limitations, a perceived lack of preventive advice as well as peer influence were presented as barriers to SDCT. Farmers can build confidence when a graded approach to SDCT is implemented, which could help overcome the fear of SDCT and reliance on antibiotics. Regulatory pressure, high standards of farm hygiene and use of targeted veterinary consults were found to facilitate SDCT. Education was suggested to motivate farmers in the future uptake of SDCT. Despite cited negative influences, peer influence can be utilised to encourage the farming community.

Conclusions: This study prioritises areas to facilitate the major behaviour change required as a dairy industry in order to move from blanket dry cow therapy to SDCT.

背景:选择性干奶牛疗法(SDCT)作为一种减少抗菌素使用的方法在奶牛场得到广泛推广。欧盟出台的新法规将从 2022 年 1 月起限制和规范抗生素的预防性和预防性使用。在爱尔兰,许多牧场主仍在使用干奶牛毯疗法,对于其中的许多牧场主来说,转而使用 SDCT 需要在牧场的基础设施、行为和/或文化方面做出重大改变。现有研究报告指出,必须了解农民启动任何重大行为改变的动机。然而,目前尚不清楚爱尔兰农民对 SDCT 的了解、想法和信念。本研究的目的是采用定性方法,探讨奶农认为SDCT存在哪些障碍和促进因素,并探讨他们在自愿参加由训练有素的兽医提供的干奶牛咨询后,是否选择实施SDCT,目的是最大限度地提高干奶期乳房健康状况,并安全地转向SDCT:本研究联系了 19 位牧场主,并就牧场主对 SDCT 后果的看法进行了电话访谈。对录音进行了专业的逐字记录,并采用归纳式主题分析法进行了定性分析。分析确定了实施 SDCT 的 6 个障碍和 6 个促进因素。对乳腺炎发病率增加的严重恐惧是显而易见的,这种恐惧导致了对 SDCT 的不情愿和对抗生素的依赖。对 "乳腺炎分级治疗 "的不同看法、基础设施的局限性、预防建议的缺乏以及同行的影响都是 "乳腺炎分级治疗 "的障碍。如果采取分级的 SDCT 方法,农民就能建立信心,这有助于克服对 SDCT 的恐惧和对抗生素的依赖。研究发现,监管压力、高标准的农场卫生和使用有针对性的兽医咨询有利于SDCT。建议通过教育激励农民在未来采用 SDCT。尽管提到了一些负面影响,但仍可利用同行的影响来鼓励养殖社区:这项研究确定了奶牛业需要进行重大行为改变的优先领域,以便从一揽子干奶牛疗法转向SDCT。
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引用次数: 0
Warmblood fragile foal syndrome causative single nucleotide polymorphism frequency in horses in Ireland. 爱尔兰马匹温血脆弱马驹综合征致病单核苷酸多态性频率。
IF 2.9 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2021-10-18 DOI: 10.1186/s13620-021-00206-1
Áine Rowe, Sharon Flanagan, Gerald Barry, Lisa M Katz, Elizabeth A Lane, Vivienne Duggan

Background: Warmblood Fragile Foal Syndrome (WFFS) is an autosomal recessive disorder caused by a mutation in the procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 (PLOD1) gene. Homozygosity for the mutation results in defective collagen synthesis which clinically manifests as the birth of non viable or still born foals with abnormally fragile skin. While the mutation has been identified in non Warmblood breeds including the Thoroughbred, to date all homozygous clinically affected cases reported in the scientific literature are Warmblood foals. The objective of this study was to investigate the carrier frequency of the mutation in the Thoroughbred and sport horse populations in Ireland.

Methods: A test was developed at the UCD School of Veterinary Medicine using real-time PCR to amplify the PLOD1 gene c.2032G > A variant. A subset of the samples was also submitted to an external laboratory with a licensed commercial WFFS genetic test.

Results: Warmblood Fragile Foal Syndrome genotyping was performed on hair samples from 469 horses representing 6 different breeds. Six of 303 (1.98%) sport horses tested and three of 109 (2.75%) Thoroughbreds tested were heterozygous for the WFFS polymorphism (N/WFFS). The WFFS polymorphism was not identified in the Standardbred, Cob, Connemara, or other pony breeds.

Conclusions: The study identified a low frequency of the WFFS causative mutation in sport horses and Thoroughbreds in Ireland, highlighting the importance of WFFS genetic testing in order to identify phenotypically normal heterozygous carriers and to prevent the birth of nonviable foals.

背景:温血脆弱马驹综合征(WFFS)是一种常染色体隐性遗传病,由前胶原-赖氨酸,2-氧戊二酸5-双加氧酶1 (PLOD1)基因突变引起。突变的纯合性导致胶原蛋白合成缺陷,临床表现为出生的马驹皮肤异常脆弱,无法存活或仍未出生。虽然在包括纯种马在内的非温血马种中发现了这种突变,但迄今为止,科学文献中报告的所有纯合临床影响病例都是温血马驹。本研究的目的是调查突变的载体频率在纯种马和运动马种群在爱尔兰。方法:在UCD兽医学院采用实时荧光定量PCR扩增PLOD1基因c.2032G > A变异体。还将一部分样本提交给具有许可的商业WFFS基因检测的外部实验室。结果:对来自6个不同品种的469匹马的毛发样本进行了温血脆弱马驹综合征基因分型。303匹运动马中6匹(1.98%)和109匹纯种马中3匹(2.75%)的WFFS多态性为杂合型(N/WFFS)。在标准种、Cob、Connemara或其他小马品种中未发现WFFS多态性。结论:该研究在爱尔兰的运动马和纯种马中发现了低频率的WFFS致病突变,强调了WFFS基因检测的重要性,以便识别表型正常的杂合携带者,并防止无法存活的马驹的出生。
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引用次数: 0
Comparative analysis of genetic characterization of β-lactam-resistant Escherichia coli from bulk tank milk in Korea. 韩国散装罐奶中抗β-内酰胺大肠杆菌基因特征的比较分析。
IF 2.9 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2021-09-21 DOI: 10.1186/s13620-021-00203-4
Hye-Ri Jung, Koeun Kim, Young Ju Lee

Background: This study was conducted to analyze the genetic characteristics of 41 β-lactam-resistant Escherichia coli isolates, which are one of the common causes of environmental mastitis, isolated from the bulk tank milk of 290 dairy farms in five factories operated by three dairy companies in Korea.

Results: Analysis of the phenotypic and genotypic characteristics of β-lactam-resistant E. coli isolates revealed differences between factories even within the same company. Isolates from factory A1 and C1 showed high resistance to cephalothin (76.9 and 100%, respectively), which is a first-generation cephalosporins, whereas resistance to tetracycline was showed by only the isolates from factories B1 (60.0%), C2 (66.7%), and C3 (100%). Although all the 41 β-lactam-resistant E. coli isolates were positive for blaOXA-1, blaTEM-1 was highly prevalent in isolates from factories C2 (100%) and C3 (100%). Among 17 isolates resistant to both β-lactams and aminoglycosides, the most common multilocus sequence type was ST399 (13isolates, 76.5%). Furthermore, 2 (11.8%) and 12 (70.6%) isolates belonged to the phylogenetic groups B2 and D, respectively, which are invasive strains that cause intestinal infections, respectively. The predominant serogroup was O15 (70.6%), which is a globally distributed extraintestinal pathogen. Interestingly, one isolate from factory A1 belonged to O157 and carried six virulence genes, simultaneously.

Conclusions: Although E. coli isolates were isolated from bulk tank milk, and not the clinical mastitis samples, the presence of the phylogenetic groups B2 and D, and the serogroups O15 and O157, which harbor antimicrobial resistance genes and virulence factors, can pose a threat to public health.

背景:本研究分析了环境乳腺炎常见病因之一的41株β-内酰胺耐药大肠杆菌的遗传特征,从韩国三家乳制品公司运营的五家工厂的290个奶牛场的散装罐奶中分离得到。结果:对β-内酰胺抗性大肠杆菌分离株的表型和基因型特征的分析显示,即使在同一家公司内,工厂之间也存在差异。来自工厂A1和C1的分离株对第一代头孢菌素头孢噻吩表现出高耐药性(分别为76.9%和100%),而只有来自工厂B1(60.0%)、C2(66.7%)和C3(100%)的分离株表现出对四环素的耐药性。尽管所有41个β-内酰胺抗性大肠杆菌分离株都对blaOXA-1呈阳性,但blaTEM-1在来自工厂C2(100%)和C3(100%)的分离株中高度流行。在17个同时对β-内酰胺类和氨基糖苷类耐药的分离株中,最常见的多位点序列类型是ST399(13个分离株,76.5%)。此外,2个(11.8%)和12个(70.6%)分离株分别属于系统发育群B2和D,它们分别是引起肠道感染的侵袭性菌株。主要血清群是O15(70.6%),它是一种全球分布的肠外病原体。有趣的是,A1工厂的一个分离株属于O157,同时携带六个毒力基因。结论:尽管大肠杆菌分离株是从散装牛奶中分离出来的,而不是从临床乳腺炎样本中分离出来,但系统发育群B2和D以及血清群O15和O157的存在可能会对公众健康构成威胁,因为它们携带抗微生物耐药性基因和毒力因子。
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引用次数: 3
First detected case of rabbit Haemorrhagic disease virus 2 (RHDV2) in the Irish hare (Lepus timidus hibernicus). 在爱尔兰兔(Lepus timidus hibernicus)中首次发现兔出血性疾病病毒2 (RHDV2)病例。
IF 2.9 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2021-09-18 DOI: 10.1186/s13620-021-00205-2
Aideen Kennedy, Louise Britton, Andrew W Byrne, Christina Byrne, Mícheál Casey, Orla Flynn, Jose Maria Lozano, Ferdia Marnell, Maire McElroy, Neil Reid, Margaret Wilson, William FitzGerald

Background: Rabbit haemorrhagic disease virus (RHDV) is a Lagovirus, a subgroup of the family Caliciviridae. RHDV2 is a variant first described in France in 2010, and has since spread globally. It has been reported in several Lagomorph species (rabbits, hares, and their relatives) as well as other mammals including voles and shrews. The disease has raised international concerns for its potential impact on population abundance trajectories, particularly as 25% of Lagomorphs are currently Red-Listed by the International Union for the Conservation of Nature (IUCN). The Irish hare (Lepus timidus hibernicus) is a subspecies of the mountain hare, L. timidus, and is endemic to Ireland, making it an Evolutionarily Significant Unit of intrinsic value.

Case presentation: The first case of RHDV2 was detected in a wild Irish hare in July 2019. The individual exhibited atypical neurological behaviour (running in circles) prior to death. On necropsy, pink tinged foam was seen in the trachea and congestion was noted in the lungs, but there was no evidence of haemorrhages in any other organ. Both the liver and spleen were tested by reverse transcription real time qPCR confirming high levels of RHDV2 RNA. Histopathology confirmed multifocal necrotising hepatitis.

Conclusion: The Irish hare is susceptible to RHDV2 infection. Further investigation is warranted to explore the clinical, epidemiological, and population biology implications.

背景:兔出血性疾病病毒(RHDV)是一种拉各斯病毒,是钩状病毒科的一个亚群。RHDV2是2010年在法国首次发现的一种变异,此后已在全球传播。据报道,它在几种Lagomorph物种(兔子,野兔及其近亲)以及其他哺乳动物(包括田鼠和鼩鼱)中都有发现。该疾病已引起国际社会对其对种群丰度轨迹的潜在影响的关注,特别是目前25%的Lagomorphs被国际自然保护联盟(IUCN)列入红色名录。爱尔兰野兔(Lepus timidus hibernicus)是山兔L. timidus的一个亚种,是爱尔兰特有的,使其成为具有内在价值的进化意义单位。病例介绍:2019年7月,在一只野生爱尔兰野兔中发现了第一例RHDV2病例。个体在死前表现出非典型的神经行为(绕圈跑)。尸检显示,气管内可见粉红色泡沫,肺部充血,但其他器官未见出血。通过反转录实时qPCR检测肝脏和脾脏,证实了高水平的RHDV2 RNA。组织病理学证实为多灶性坏死性肝炎。结论:爱尔兰兔对RHDV2易感。进一步的调查是必要的,以探讨临床,流行病学和人口生物学的影响。
{"title":"First detected case of rabbit Haemorrhagic disease virus 2 (RHDV2) in the Irish hare (Lepus timidus hibernicus).","authors":"Aideen Kennedy,&nbsp;Louise Britton,&nbsp;Andrew W Byrne,&nbsp;Christina Byrne,&nbsp;Mícheál Casey,&nbsp;Orla Flynn,&nbsp;Jose Maria Lozano,&nbsp;Ferdia Marnell,&nbsp;Maire McElroy,&nbsp;Neil Reid,&nbsp;Margaret Wilson,&nbsp;William FitzGerald","doi":"10.1186/s13620-021-00205-2","DOIUrl":"https://doi.org/10.1186/s13620-021-00205-2","url":null,"abstract":"<p><strong>Background: </strong>Rabbit haemorrhagic disease virus (RHDV) is a Lagovirus, a subgroup of the family Caliciviridae. RHDV2 is a variant first described in France in 2010, and has since spread globally. It has been reported in several Lagomorph species (rabbits, hares, and their relatives) as well as other mammals including voles and shrews. The disease has raised international concerns for its potential impact on population abundance trajectories, particularly as 25% of Lagomorphs are currently Red-Listed by the International Union for the Conservation of Nature (IUCN). The Irish hare (Lepus timidus hibernicus) is a subspecies of the mountain hare, L. timidus, and is endemic to Ireland, making it an Evolutionarily Significant Unit of intrinsic value.</p><p><strong>Case presentation: </strong>The first case of RHDV2 was detected in a wild Irish hare in July 2019. The individual exhibited atypical neurological behaviour (running in circles) prior to death. On necropsy, pink tinged foam was seen in the trachea and congestion was noted in the lungs, but there was no evidence of haemorrhages in any other organ. Both the liver and spleen were tested by reverse transcription real time qPCR confirming high levels of RHDV2 RNA. Histopathology confirmed multifocal necrotising hepatitis.</p><p><strong>Conclusion: </strong>The Irish hare is susceptible to RHDV2 infection. Further investigation is warranted to explore the clinical, epidemiological, and population biology implications.</p>","PeriodicalId":54916,"journal":{"name":"Irish Veterinary Journal","volume":"74 1","pages":"25"},"PeriodicalIF":2.9,"publicationDate":"2021-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8449885/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39430431","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Identification of different attitudes towards paratuberculosis control using cluster analysis applied on data from an anonymous survey among German cattle farmers. 利用聚类分析对德国养牛户的匿名调查数据确定对副结核病控制的不同态度。
IF 2.9 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2021-09-15 DOI: 10.1186/s13620-021-00204-3
Veit Zoche-Golob, René Pützschel, Esra Einax, Karsten Donat

Background: Paratuberculosis is a common disease in ruminants, causing economic losses in livestock farming, and a relationship between the exposure to its causative agent Mycobacterium avium subsp. paratuberculosis, and Crohn's disease in humans is discussed. Despite this, only a minority of cattle farmers have enroled in voluntary control programmes in most countries. Therefore, this study aimed at investigating the farmer's opinion on paratuberculosis and their motivations to participate in a control programme. The objective was to identify different groups among farmers regarding their motivation and thereby contribute to a better understanding of farmers' attitudes towards paratuberculosis control.

Results: Two hundred twenty-five farmers responded to questionnaires that were distributed among cattle farmers in Saxony and Thuringia, federal states of Germany, together with boot-swab sampling sets for a free and anonymous herd-level paratuberculosis test. Among them, dairy herds and large herds were overrepresented. A hierarchical cluster analysis of the farmers' answers resulted in four groups that we tagged as 'informed sceptics', 'deniers', 'affected supporters' and 'free supporters'. In all groups, the majority considered paratuberculosis a threat to the public image of cattle farmers. Nearly all participants wanted to know the paratuberculosis herd status of purchased cattle. In contrast to the supporters, the informed sceptics and the deniers did not consider paratuberculosis a dangerous epizootic disease and would not welcome a mandatory control programme. The deniers and the affected supporters, but not the informed sceptics and the free supporters, assumed that their herd is affected by paratuberculosis. Unlike the deniers, all other groups would enrol in a control programme if the pathogen would have been found in their herd. Protecting future profitability and improving animal health were the two most important motivations to control paratuberculosis in all groups followed by aspects related to the marketing of breeding cattle. Most frequently, the costs and the assumed inaccuracy of diagnostics tests were mentioned as obstacles that hamper programme enrolment.

Conclusions: Significantly different attitudes of farmers regarding paratuberculosis control were identified. Therefore, tailored rather than uniform communication strategies are required to enhance participation in voluntary paratuberculosis control programmes.

背景:副结核是反刍动物的一种常见疾病,给畜牧业造成经济损失,与暴露于其病原体鸟分枝杆菌亚种有关。副结核和人类克罗恩病的讨论。尽管如此,在大多数国家,只有少数养牛户参加了自愿控制方案。因此,本研究旨在调查农民对副结核病的看法以及他们参与控制规划的动机。目的是确定农民中不同群体的动机,从而有助于更好地了解农民对副结核病控制的态度。结果:225名农民回答了在德国联邦州萨克森州和图林根州的养牛户中分发的问卷,以及用于免费和匿名的牛群副结核病测试的靴擦取样集。其中,奶牛群和大型奶牛群的比例过高。对农民的回答进行分层聚类分析,我们将其分为四组,分别是“知情怀疑论者”、“否认者”、“受影响的支持者”和“自由支持者”。在所有群体中,大多数人认为副结核病对养牛户的公众形象构成威胁。几乎所有的参与者都想知道所购买牛的副结核病群体状况。与支持者相反,知情的怀疑论者和否认者不认为副结核病是一种危险的动物传染病,也不欢迎强制性控制方案。否认者和受影响的支持者,而不是知情的怀疑论者和自由的支持者,假设他们的牛群受到副结核病的影响。与否认者不同的是,如果在他们的群体中发现了病原体,所有其他群体都会参加控制计划。保护未来盈利能力和改善动物健康是在所有群体中控制副结核病的两个最重要动机,其次是与种牛销售有关的方面。最常见的是,费用和诊断测试的假定不准确被认为是阻碍方案参与的障碍。结论:农民对副结核控制的态度存在显著差异。因此,需要有针对性的而不是统一的传播战略来加强对副结核病自愿控制规划的参与。
{"title":"Identification of different attitudes towards paratuberculosis control using cluster analysis applied on data from an anonymous survey among German cattle farmers.","authors":"Veit Zoche-Golob,&nbsp;René Pützschel,&nbsp;Esra Einax,&nbsp;Karsten Donat","doi":"10.1186/s13620-021-00204-3","DOIUrl":"https://doi.org/10.1186/s13620-021-00204-3","url":null,"abstract":"<p><strong>Background: </strong>Paratuberculosis is a common disease in ruminants, causing economic losses in livestock farming, and a relationship between the exposure to its causative agent Mycobacterium avium subsp. paratuberculosis, and Crohn's disease in humans is discussed. Despite this, only a minority of cattle farmers have enroled in voluntary control programmes in most countries. Therefore, this study aimed at investigating the farmer's opinion on paratuberculosis and their motivations to participate in a control programme. The objective was to identify different groups among farmers regarding their motivation and thereby contribute to a better understanding of farmers' attitudes towards paratuberculosis control.</p><p><strong>Results: </strong>Two hundred twenty-five farmers responded to questionnaires that were distributed among cattle farmers in Saxony and Thuringia, federal states of Germany, together with boot-swab sampling sets for a free and anonymous herd-level paratuberculosis test. Among them, dairy herds and large herds were overrepresented. A hierarchical cluster analysis of the farmers' answers resulted in four groups that we tagged as 'informed sceptics', 'deniers', 'affected supporters' and 'free supporters'. In all groups, the majority considered paratuberculosis a threat to the public image of cattle farmers. Nearly all participants wanted to know the paratuberculosis herd status of purchased cattle. In contrast to the supporters, the informed sceptics and the deniers did not consider paratuberculosis a dangerous epizootic disease and would not welcome a mandatory control programme. The deniers and the affected supporters, but not the informed sceptics and the free supporters, assumed that their herd is affected by paratuberculosis. Unlike the deniers, all other groups would enrol in a control programme if the pathogen would have been found in their herd. Protecting future profitability and improving animal health were the two most important motivations to control paratuberculosis in all groups followed by aspects related to the marketing of breeding cattle. Most frequently, the costs and the assumed inaccuracy of diagnostics tests were mentioned as obstacles that hamper programme enrolment.</p><p><strong>Conclusions: </strong>Significantly different attitudes of farmers regarding paratuberculosis control were identified. Therefore, tailored rather than uniform communication strategies are required to enhance participation in voluntary paratuberculosis control programmes.</p>","PeriodicalId":54916,"journal":{"name":"Irish Veterinary Journal","volume":"74 1","pages":"24"},"PeriodicalIF":2.9,"publicationDate":"2021-09-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8444409/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39421747","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Epidemiology and molecular characterization of re-emerged virulent strains of Peste des Petits Ruminants virus among sheep in Kassala State, Eastern Sudan. 苏丹东部卡萨拉州绵羊中重新出现的小反刍兽疫毒毒株的流行病学和分子特征
IF 2.9 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2021-09-07 DOI: 10.1186/s13620-021-00202-5
Fatima A Saeed, Mohammed M Gumaa, Sana A Abdelaziz, Khalid A Enan, Selma K Ahmed, Mohammed O Hussien

Background: Peste des Petits Ruminants (PPR) is a severe contagious viral disease, which mainly affects small ruminants. PPR is caused by a Morbillivirus that belongs to the family Paramyxoviridae. In this study 12 suspected PPR outbreaks among sheep and goats were investigated in four localities in Kassala State, Eastern Sudan, during 2015-2017. The causative agent was confirmed by a Sandwich Enzyme-Linked Immunosorbent Assay (sELISA), and a Reverse Transcription Polymerase Chain Reaction (RT-PCR) targeting a partial sequence of nucleocapsid protein gene (N- gene) and a partial sequence of fusion protein gene (F- gene). Sequencing and phylogenetic analysis were carried out on six N- gene based RT-PCR products selected from two outbreaks occurred on border and inner localities of Kassala State to determine the circulating lineages of PPRV strains. Identity percentages were determined between isolates in this study and previous Sudanese, and other (African and Asian) isolates which clustered along with them.

Results: Out of 30 samples, 22 (73.3%) were positive using sandwich ELISA. From 22 s ELISA positive samples, 17 (77.3%) were positive by Ngene based RT-PCR and only 7(43.8%) out of 16 positive samples by N gene based RT-PCR were positive using Fgene based RT-PCR. The sequencing and phylogenetic analysis confirmed involvement of the lineage IV of PPRV in outbreaks among small ruminants in Kassala State and high identity percentage between our isolates and previous Sudanese and other (African and Asian) isolates.

Conclusions: The present study demonstrates that genetic relationship between PPRV strains circulating in sheep in Kassala State, Eastern Sudan, and PPRV strains characterized as lineage IV in neighboring African countries such as Eretria,Ethiopia, Egypt, and other Asian countries.

背景:小反刍兽疫(Peste des Petits Ruminants, PPR)是一种主要影响小反刍动物的严重传染性病毒性疾病。小反刍兽疫是由一种属于副粘病毒科的麻疹病毒引起的。在这项研究中,2015-2017年期间在苏丹东部卡萨拉州的4个地区调查了绵羊和山羊中12起疑似小反刍兽疫暴发。通过三明治酶联免疫吸附试验(sELISA)和针对核衣壳蛋白基因(N-基因)部分序列和融合蛋白基因(F-基因)部分序列的逆转录聚合酶链反应(RT-PCR)证实了病原菌。对从卡萨拉州边境和内陆地区发生的两次暴发中选择的6个基于N基因的RT-PCR产物进行测序和系统发育分析,以确定PPRV毒株的传播谱系。确定了本研究中分离株与以前的苏丹分离株以及与它们聚集在一起的其他(非洲和亚洲)分离株之间的鉴定百分比。结果:30份样品中,夹心ELISA检测阳性22份(73.3%)。22份ELISA阳性样本中,Ngene RT-PCR阳性17份(77.3%),Fgene RT-PCR阳性16份(7份),Fgene RT-PCR阳性43.8%。测序和系统发育分析证实,PPRV谱系IV与卡萨拉州小反刍动物暴发有关,我们的分离株与以前的苏丹和其他(非洲和亚洲)分离株具有很高的同一性。结论:本研究表明,在苏丹东部卡萨拉州的绵羊中流行的PPRV毒株与在邻近非洲国家(如厄立特里亚、埃塞俄比亚、埃及和其他亚洲国家)以IV系为特征的PPRV毒株之间存在遗传关系。
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引用次数: 3
Resistance and virulence distribution in enterococci isolated from broilers reared in two farming systems. 两种饲养方式肉鸡分离肠球菌的耐药性和毒力分布。
IF 2.9 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2021-08-20 DOI: 10.1186/s13620-021-00201-6
Teresa Semedo-Lemsaddek, João Bettencourt Cota, Tânia Ribeiro, Amélia Pimentel, Luís Tavares, Fernando Bernando, Manuela Oliveira

Background: The impact of enterococci in human health has been growing for the last decades, mainly due to their resistance to several antimicrobial agents. Human consumption of contaminated meat, especially poultry, has been identified as a possible route of transmission. The aim of the present study was to evaluate and compare the antimicrobial resistance profiles and virulence genes of enterococci isolated from Portuguese conventional and free-range broiler farms.

Results: Antibiotic susceptibility testing showed high frequencies of resistance to tetracycline in both farming systems. Resistance to erythromycin and gentamicin were detected in about half of the isolates. Resistance to penicillin was the less frequently observed and no vancomycin resistant isolates were identified. The majority of the enterococcal isolates, from either farming systems, were resistant to more than one antibiotic, and no statistical associations were found, except for penicillin resistance which associated with the genetic clusters. No differences were found between farming systems regarding the prevalence of tet(M), erm(B), aac (6')-Ie-aph (2″)-Ia and pbp5 genes, nevertheless pbp5 prevalence was associated with the different genetic clusters. Hemolytic activity was identified in 26.47% of all isolates and gelatinase activity in 50%. The gelE gene was identified in the majority of the isolates, whereas esp and agg genes were rarely detected. The cylA determinant was not detected in any of the isolates.

Conclusions: Overall, results suggest that similar resistance patterns and virulence genes can be found in both farming systems, though enterococci in free-range conditions should be less prone to acquire further resistance genes.

背景:在过去的几十年里,肠球菌对人类健康的影响一直在增长,主要是由于它们对几种抗微生物药物具有耐药性。人类食用受污染的肉类,特别是家禽,已被确定为可能的传播途径。本研究的目的是评估和比较从葡萄牙传统肉鸡养殖场和散养肉鸡养殖场分离的肠球菌的抗微生物药物耐药性和毒力基因。结果:抗生素药敏试验显示两种养殖系统对四环素的耐药频率较高。半数菌株对红霉素和庆大霉素耐药。青霉素耐药较少,未发现万古霉素耐药分离株。来自两种养殖系统的大多数肠球菌分离株均对一种以上抗生素具有耐药性,除青霉素耐药性与遗传聚类相关外,未发现统计学相关性。tet(M)、erm(B)、aac(6′)-Ie-aph(2″)-Ia和pbp5基因的流行率在不同的农业系统之间没有差异,但pbp5基因的流行与不同的遗传群有关。在所有分离株中,溶血活性为26.47%,明胶酶活性为50%。大多数分离株中检出gelE基因,而esp和agg基因很少检出。在所有分离株中均未检测到cylA的决定因素。结论:总体而言,结果表明在两种养殖系统中可以发现相似的耐药模式和毒力基因,尽管散养条件下的肠球菌不太容易获得进一步的耐药基因。
{"title":"Resistance and virulence distribution in enterococci isolated from broilers reared in two farming systems.","authors":"Teresa Semedo-Lemsaddek,&nbsp;João Bettencourt Cota,&nbsp;Tânia Ribeiro,&nbsp;Amélia Pimentel,&nbsp;Luís Tavares,&nbsp;Fernando Bernando,&nbsp;Manuela Oliveira","doi":"10.1186/s13620-021-00201-6","DOIUrl":"https://doi.org/10.1186/s13620-021-00201-6","url":null,"abstract":"<p><strong>Background: </strong>The impact of enterococci in human health has been growing for the last decades, mainly due to their resistance to several antimicrobial agents. Human consumption of contaminated meat, especially poultry, has been identified as a possible route of transmission. The aim of the present study was to evaluate and compare the antimicrobial resistance profiles and virulence genes of enterococci isolated from Portuguese conventional and free-range broiler farms.</p><p><strong>Results: </strong>Antibiotic susceptibility testing showed high frequencies of resistance to tetracycline in both farming systems. Resistance to erythromycin and gentamicin were detected in about half of the isolates. Resistance to penicillin was the less frequently observed and no vancomycin resistant isolates were identified. The majority of the enterococcal isolates, from either farming systems, were resistant to more than one antibiotic, and no statistical associations were found, except for penicillin resistance which associated with the genetic clusters. No differences were found between farming systems regarding the prevalence of tet(M), erm(B), aac (6')-Ie-aph (2″)-Ia and pbp5 genes, nevertheless pbp5 prevalence was associated with the different genetic clusters. Hemolytic activity was identified in 26.47% of all isolates and gelatinase activity in 50%. The gelE gene was identified in the majority of the isolates, whereas esp and agg genes were rarely detected. The cylA determinant was not detected in any of the isolates.</p><p><strong>Conclusions: </strong>Overall, results suggest that similar resistance patterns and virulence genes can be found in both farming systems, though enterococci in free-range conditions should be less prone to acquire further resistance genes.</p>","PeriodicalId":54916,"journal":{"name":"Irish Veterinary Journal","volume":"74 1","pages":"22"},"PeriodicalIF":2.9,"publicationDate":"2021-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8379790/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39330389","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 10
期刊
Irish Veterinary Journal
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