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Human kidney organoids for modeling the development of different diseases. 人类肾脏类器官用于模拟不同疾病的发展。
2区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-02-06 DOI: 10.1016/bs.ctdb.2024.12.001
Elena Ceccotti, Armina Semnani, Benedetta Bussolati, Stefania Bruno

The increasing incidence of kidney diseases has highlighted the need for in vitro experimental models to mimic disease development and to test new therapeutic approaches. Traditional two-dimensional in vitro experimental models are not fully able to recapitulate renal diseases. Instead, kidney organoids represent three-dimensional models that better mimic the human organ from both structural and functional points of view. Human pluripotent stem cells (PSCs), both embryonic and induced, are ideal sources for generating renal organoids. These organoids contain all renal cell types and the protocols to differentiate PSCs into renal organoids consist of three different stages that recapitulate embryonic development: mesodermal induction, nephron progenitor formation, and nephron differentiation. Recently it has been establish a renal organoid model where collecting ducts are also present. In this case, the presence of ureteric bud progenitor cells is essential. Renal organoids are particularly useful for studying genetic diseases, by introducing the specific mutations in PSCs by genome editing or generating organoids from patient-derived PSCs. Moreover, renal organoids represent promising models in toxicology studies and testing new therapeutic approaches. Renal organoids can be established also from adult stem cells. This type of organoid, named tubuloid, is composed only of epithelial cells and recapitulates the tissue repair process. The tubuloids can be generated from adult stem or progenitor cells, obtained from renal biopsies or urine, and are promising in vitro models for studying tubular functions, diseases, and regeneration. Tubuloids can be derived from patients and permit the study of genetic diseases, performing personalized drug screening and modeling renal pathologies.

肾脏疾病的发病率不断增加,强调需要体外实验模型来模拟疾病的发展和测试新的治疗方法。传统的二维体外实验模型不能完全概括肾脏疾病。相反,肾类器官代表三维模型,从结构和功能的角度更好地模仿人体器官。人类多能干细胞(PSCs),无论是胚胎干细胞还是诱导干细胞,都是生成肾类器官的理想来源。这些类器官包含所有肾细胞类型,将PSCs分化为肾类器官的方案包括概括胚胎发育的三个不同阶段:中胚层诱导、肾元祖形成和肾元分化。最近已经建立了一个肾类器官模型,其中收集管也存在。在这种情况下,输尿管芽祖细胞的存在是必不可少的。通过基因组编辑在PSCs中引入特定突变或从患者来源的PSCs中生成类器官,肾类器官对研究遗传疾病特别有用。此外,肾类器官在毒理学研究和测试新的治疗方法中代表了有希望的模型。肾类器官也可以由成体干细胞建立。这种类型的类器官,被称为管状体,仅由上皮细胞组成,并概括了组织修复过程。小管可以从肾活检或尿液中获得的成体干细胞或祖细胞中生成,是研究小管功能、疾病和再生的体外模型。小管可以从患者身上提取,并允许遗传疾病的研究,进行个性化的药物筛选和肾脏病理建模。
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引用次数: 0
From neural crest migration to the onset of gangliogenesis. 从神经嵴迁移到神经节发生的开始。
2区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-03-13 DOI: 10.1016/bs.ctdb.2025.02.003
Hugo A Urrutia, Marianne E Bronner

The neural crest is a highly migratory and multipotent cell population that contributes to many defining features of vertebrates. As a uniquely vertebrate cell type, the neural crest is an excellent model for studying cell lineage and diversification during embryonic development because of its multipotency, motility, and capacity to form a plethora of derivatives. Neural crest cells migrate extensively throughout the body and contribute to many of the defining features of vertebrate embryos, including the craniofacial skeleton, most of the peripheral nervous system and pigmentation of the skin. What guides their migration and subsequent formation of discrete structures? Interactions between neural crest cells and their environment, including other cell types like placode cells, play a major role in guiding their migration and condensation into numerous derivatives. In this review, we discuss aspects of neural crest induction, migration and axial level differences, highlighting what is currently known regarding molecular cues that govern their formation, migratory behavior, and differentiation as they reach their final destinations. We particularly focus on formation of cranial sensory ganglia. New technologies are playing an important role in furthering our understanding of the molecular mechanisms underlying neural crest migration and what leads to cessation of their movement and onset of differentiation.

神经嵴是一个高度迁移和多能的细胞群,有助于许多脊椎动物的定义特征。神经嵴作为一种独特的脊椎动物细胞类型,由于其多能性、运动性和形成大量衍生物的能力,是研究胚胎发育过程中细胞谱系和多样化的良好模型。神经嵴细胞在全身广泛迁移,并对脊椎动物胚胎的许多决定性特征做出了贡献,包括颅面骨骼、大部分周围神经系统和皮肤色素沉着。是什么引导了它们的迁移和随后离散结构的形成?神经嵴细胞与其环境之间的相互作用,包括其他细胞类型,如基板细胞,在引导其迁移和凝结成许多衍生物方面起着重要作用。在这篇综述中,我们讨论了神经嵴诱导、迁移和轴向水平差异的各个方面,重点介绍了目前已知的控制它们形成、迁移行为和到达最终目的地时分化的分子线索。我们特别关注颅感觉神经节的形成。新技术在进一步了解神经嵴迁移的分子机制以及导致其运动停止和分化开始的原因方面发挥着重要作用。
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引用次数: 0
Outside influences: The impact of extracellular matrix mechanics on cell migration. 外界影响:细胞外基质力学对细胞迁移的影响。
2区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-01-28 DOI: 10.1016/bs.ctdb.2025.01.003
Ronen Zaidel-Bar, Priti Agarwal

"No cell is an island" - highlights the interconnectedness of cellular behavior and the extracellular matrix (ECM). Cell migration is inherently contextual, as cells navigate and adapt to their environments, reshaping the ECM while being influenced by its properties. This review focuses on the mechanical characteristics of the ECM-specifically its architecture, porosity, dynamics, and stiffness-and how these attributes affect cell behavior and migration strategies. We discuss how the mechanical properties are modulated by the composition and arrangement of ECM components and the role of enzymatic activities, including crosslinking and matrix metalloproteinases. By presenting examples from vertebrate and invertebrate developmental models, we demonstrate how ECM mechanics dictate cell migration at various biological scales. Additionally, we examine the importance of cell-matrix adhesions in regulating migration speed and direction. While in vitro studies have advanced our understanding of the molecular mechanisms at play, significant questions persist regarding the regulation of cell migration by ECM mechanics in vivo. Ultimately, this synthesis aims to illuminate the complexities of cell-ECM mechanical interactions, pointing the way for future research that may unveil novel insights into how ECM mechanics influences cell migration during development and disease.

“没有细胞是孤岛”——强调了细胞行为和细胞外基质(ECM)的相互联系。细胞迁移本质上是上下文相关的,因为细胞导航和适应它们的环境,重塑ECM,同时受到其特性的影响。这篇综述的重点是ecm的力学特性,特别是它的结构、孔隙度、动力学和刚度,以及这些属性如何影响细胞行为和迁移策略。我们讨论了ECM组分的组成和排列以及酶活性(包括交联和基质金属蛋白酶)的作用如何调节机械性能。通过展示脊椎动物和无脊椎动物发育模型的例子,我们展示了ECM机制如何在不同的生物尺度上决定细胞迁移。此外,我们研究了细胞-基质粘附在调节迁移速度和方向中的重要性。虽然体外研究提高了我们对分子机制的理解,但关于体内ECM机制对细胞迁移的调节仍然存在重大问题。最终,这一综合旨在阐明细胞-ECM机械相互作用的复杂性,为未来的研究指明道路,揭示ECM力学如何影响发育和疾病期间的细胞迁移。
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引用次数: 0
Single-cell migration in development - Lessons from germ cells. 发育中的单细胞迁移——来自生殖细胞的教训。
2区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-01-27 DOI: 10.1016/bs.ctdb.2025.01.002
Jan Schick, Laura Ermlich, Lucas Kühl, Dennis Hoffmann, Erez Raz

Primordial germ cells (PGCs) migrate to associate with somatic cells to form the gonad, generate gametes and thereby ensure fertility. This chapter presents the mechanisms underlying single-cell migration performed by PGCs in various organisms, such as zebrafish, Drosophila, and the mouse models. This review introduces the principles of cell motility, factors controlling directed migration, and the effects of interactions between migrating cells and their environment. Specifically, it discusses passive and active migration mechanisms, the roles of guidance cues, and of interactions with different tissues that influence PGC migration. Comparative analysis of the process in different organisms reveals conserved and distinct strategies for motility and directed migration. The presented mechanisms contribute to broader understanding of cell migration, highlighting PGCs as a useful in vivo model for studying the principles governing the movement of cells within tissues.

原始生殖细胞(PGCs)通过迁移与体细胞结合形成性腺,产生配子,从而保证生殖能力。本章介绍了PGCs在各种生物(如斑马鱼、果蝇和小鼠模型)中进行单细胞迁移的机制。本文介绍了细胞运动的原理,控制定向迁移的因素,以及迁移细胞与环境相互作用的影响。具体来说,它讨论了被动和主动迁移机制,引导线索的作用,以及与影响PGC迁移的不同组织的相互作用。对不同生物的迁移过程进行比较分析,揭示了迁移和定向迁移的保守而独特的策略。所提出的机制有助于更广泛地理解细胞迁移,突出PGCs作为研究组织内细胞运动原理的有用体内模型。
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引用次数: 0
No transcription, no problem: Protein phosphorylation changes and the transition from oocyte to embryo. 没有转录,没有问题:蛋白磷酸化的改变和从卵母细胞到胚胎的转变。
2区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-02-18 DOI: 10.1016/bs.ctdb.2025.01.001
Jonathon M Thomalla, Mariana F Wolfner

Although mature oocytes are arrested in a differentiated state, they are provisioned with maternally-derived macromolecules that will start embryogenesis. The transition to embryogenesis, called 'egg activation', occurs without new transcription, even though it includes major cell changes like completing stalled meiosis, translating stored mRNAs, cytoskeletal remodeling, and changes to nuclear architecture. In most animals, egg activation is triggered by a rise in free calcium in the egg's cytoplasm, but we are only now beginning to understand how this induces the egg to transition to totipotency and proliferation. Here, we discuss the model that calcium-dependent protein kinases and phosphatases modify the phosphorylation landscape of the maternal proteome to activate the egg. We review recent phosphoproteomic mass spectrometry analyses that revealed broad phospho-regulation during egg activation, both in number of phospho-events and classes of regulated proteins. Our interspecies comparisons of these proteins pinpoints orthologs and protein families that are phospho-regulated in activating eggs, many of which function in hallmark events of egg activation, and others whose regulation and activity warrant further study. Finally, we discuss key phospho-regulating enzymes that may act apically or as intermediates in the phosphorylation cascades during egg activation. Knowing the regulators, targets, and effects of phospho-regulation that cause an egg to initiate embryogenesis is crucial at both fundamental and applied levels for understanding female fertility, embryo development, and cell-state transitions.

虽然成熟卵母细胞处于分化状态,但它们会获得母体来源的大分子物质,从而开始胚胎发育。向胚胎发生的转变被称为 "卵子激活",虽然包括完成停滞的减数分裂、翻译储存的 mRNA、细胞骨架重塑和改变核结构等重大细胞变化,但这一过程不需要新的转录。在大多数动物中,卵子活化是由卵子细胞质中游离钙的升高引发的,但我们现在才开始了解游离钙是如何诱导卵子向全能性和增殖过渡的。在这里,我们讨论了钙依赖性蛋白激酶和磷酸酶改变母体蛋白质组磷酸化结构以激活卵子的模型。我们回顾了最近的磷酸化蛋白质组质谱分析,这些分析揭示了卵子激活过程中广泛的磷酸化调控,包括磷酸化事件的数量和调控蛋白质的类别。我们对这些蛋白质进行了种间比较,找出了在卵子活化过程中被磷酸化调控的同源物和蛋白质家族,其中许多在卵子活化的标志性事件中发挥作用,还有一些蛋白质的调控和活性值得进一步研究。最后,我们讨论了可能在卵子活化过程中起顶端作用或作为磷酸化级联中间体的关键磷酸化调节酶。了解导致卵子启动胚胎发生的磷酸化调控因子、靶标和效应,对于理解雌性生育力、胚胎发育和细胞状态转换具有重要的基础和应用意义。
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引用次数: 0
Satellite cells in the growth and maintenance of muscle. 卫星细胞在肌肉生长和维持过程中的作用。
2区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-02-15 DOI: 10.1016/bs.ctdb.2024.01.020
John F Bachman, Joe V Chakkalakal

Embryonic skeletal muscle growth is contingent upon a population of somite derived satellite cells, however, the contribution of these cells to early postnatal skeletal muscle growth remains relatively high. As prepubertal postnatal development proceeds, the activity and contribution of satellite cells to skeletal muscle growth diminishes. Eventually, at around puberty, a population of satellite cells escapes terminal commitment, continues to express the paired box transcription factor Pax7, and reside in a quiescent state orbiting the myofiber periphery adjacent to the basal lamina. After adolescence, some satellite cell contributions to muscle maintenance and adaptation occur, however, their necessity is reduced relative to embryonic, early postnatal, and prepubertal growth.

胚胎骨骼肌的生长依赖于体节衍生的卫星细胞群,然而,这些细胞对出生后早期骨骼肌生长的贡献仍然相对较高。随着青春期前的产后发育,卫星细胞的活性和对骨骼肌生长的贡献逐渐减弱。最终,在青春期前后,一部分卫星细胞摆脱了终末承诺,继续表达配对盒转录因子 Pax7,并以静止状态驻留在基底层附近的肌纤维外围。青春期后,卫星细胞对肌肉的维持和适应做出了一些贡献,但与胚胎期、出生后早期和青春期前的生长相比,其必要性有所降低。
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引用次数: 0
Muscle stem cells as immunomodulator during regeneration. 肌肉干细胞作为再生过程中的免疫调节剂
2区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-02-15 DOI: 10.1016/bs.ctdb.2024.01.010
H Rex Xu, Victor V Le, Stephanie N Oprescu, Shihuan Kuang

The skeletal muscle is well known for its remarkable ability to regenerate after injuries. The regeneration is a complex and dynamic process that involves muscle stem cells (also called muscle satellite cells, MuSCs), fibro-adipogenic progenitors (FAPs), immune cells, and other muscle-resident cell populations. The MuSCs are the myogenic cell populaiton that contribute nuclei directly to the regenerated myofibers, while the other cell types collaboratively establish a microenvironment that facilitates myogenesis of MuSCs. The myogenic process includes activation, proliferation and differentiationof MuSCs, and subsequent fusion their descendent mononuclear myocytes into multinuclear myotubes. While the contributions of FAPs and immune cells to this microenvironment have been well studied, the influence of MuSCs on other cell types remains poorly understood. This review explores recent evidence supporting the potential role of MuSCs as immunomodulators during muscle regeneration, either through cytokine production or ligand-receptor interactions.

众所周知,骨骼肌在受伤后具有非凡的再生能力。再生是一个复杂而动态的过程,涉及肌肉干细胞(又称肌肉卫星细胞,MuSCs)、纤维脂肪生成祖细胞(FAPs)、免疫细胞和其他肌肉驻留细胞群。MuSCs是直接为再生肌纤维提供细胞核的肌生成细胞群,而其他类型的细胞则共同建立了促进MuSCs肌生成的微环境。成肌过程包括MuSCs的活化、增殖和分化,以及随后其后代单核肌细胞融合成多核肌管。虽然 FAPs 和免疫细胞对这种微环境的贡献已被深入研究,但 MuSCs 对其他细胞类型的影响仍鲜为人知。这篇综述探讨了最近支持造血干细胞在肌肉再生过程中通过细胞因子产生或配体-受体相互作用发挥免疫调节作用的证据。
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引用次数: 0
Macrophage lineages in heart development and regeneration. 心脏发育和再生过程中的巨噬细胞系
2区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-02-24 DOI: 10.1016/bs.ctdb.2024.01.004
Na Xu, Brittany A Gonzalez, Katherine E Yutzey

During development, macrophage subpopulations derived from hematopoietic progenitors take up residence in the developing heart. Embryonic macrophages are detectable at the early stages of heart formation in the nascent myocardium, valves and coronary vasculature. The specific subtypes of macrophages present in the developing heart reflect the generation of hematopoietic progenitors in the yolk sac, aorta-gonad-mesonephros, fetal liver, and postnatal bone marrow. Ablation studies have demonstrated specific requirements for embryonic macrophages in valve remodeling, coronary and lymphatic vessel development, specialized conduction system maturation, and myocardial regeneration after neonatal injury. The developmental origins of macrophage lineages change over time, with embryonic lineages having more reparative and remodeling functions in comparison to the bone marrow derived myeloid lineages of adults. Here we review the contributions and functions of cardiac macrophages in the developing heart with potential regenerative and reparative implications for cardiovascular disease.

在发育过程中,来自造血祖细胞的巨噬细胞亚群会在发育中的心脏中定居。在心脏形成的早期阶段,新生心肌、瓣膜和冠状血管中就能检测到胚胎巨噬细胞。发育中心脏中巨噬细胞的特定亚型反映了造血祖细胞在卵黄囊、主动脉-性腺-肾上腺、胎儿肝脏和出生后骨髓中的生成情况。消融研究表明,在瓣膜重塑、冠状动脉和淋巴管发育、特殊传导系统成熟和新生儿损伤后心肌再生中,对胚胎巨噬细胞有特殊要求。巨噬细胞系的发育起源会随着时间的推移而改变,与成人骨髓衍生的髓系相比,胚胎系具有更多的修复和重塑功能。在此,我们回顾了心脏巨噬细胞在心脏发育过程中的贡献和功能,以及对心血管疾病的潜在再生和修复意义。
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引用次数: 0
The cardiac conduction system: History, development, and disease. 心脏传导系统:历史、发展和疾病。
2区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-03-06 DOI: 10.1016/bs.ctdb.2024.02.006
Carissa Lee, Sidra Xu, Tahmina Samad, William R Goodyer, Alireza Raissadati, Paul Heinrich, Sean M Wu

The heart is the first organ to form during embryonic development, establishing the circulatory infrastructure necessary to sustain life and enable downstream organogenesis. Critical to the heart's function is its ability to initiate and propagate electrical impulses that allow for the coordinated contraction and relaxation of its chambers, and thus, the movement of blood and nutrients. Several specialized structures within the heart, collectively known as the cardiac conduction system (CCS), are responsible for this phenomenon. In this review, we discuss the discovery and scientific history of the mammalian cardiac conduction system as well as the key genes and transcription factors implicated in the formation of its major structures. We also describe known human diseases related to CCS development and explore existing challenges in the clinical context.

心脏是胚胎发育过程中最先形成的器官,它建立了维持生命和下游器官形成所需的循环基础设施。心脏功能的关键在于其启动和传播电脉冲的能力,电脉冲可使心腔协调收缩和舒张,从而实现血液和营养物质的流动。心脏内的几个专门结构(统称为心脏传导系统(CCS))负责这一现象。在这篇综述中,我们将讨论哺乳动物心脏传导系统的发现和科学史,以及与其主要结构的形成有关的关键基因和转录因子。我们还描述了与 CCS 发展相关的已知人类疾病,并探讨了临床方面的现有挑战。
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引用次数: 0
The genetics of cardiomyocyte polyploidy. 心肌细胞多倍体的遗传学。
2区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-02-06 DOI: 10.1016/bs.ctdb.2024.01.008
Tyler Buddell, Alexandra L Purdy, Michaela Patterson

The regulation of ploidy in cardiomyocytes is a complex and tightly regulated aspect of cardiac development and function. Cardiomyocyte ploidy can range from diploid (2N) to 8N or even 16N, and these states change during key stages of development and disease progression. Polyploidization has been associated with cellular hypertrophy to support normal growth of the heart, increased contractile capacity, and improved stress tolerance in the heart. Conversely, alterations to ploidy also occur during cardiac pathogenesis of diseases, such as ischemic and non-ischemic heart failure and arrhythmia. Therefore, understanding which genes control and modulate cardiomyocyte ploidy may provide mechanistic insight underlying cardiac growth, regeneration, and disease. This chapter summarizes the current knowledge regarding the genes involved in the regulation of cardiomyocyte ploidy. We discuss genes that have been directly tested for their role in cardiomyocyte polyploidization, as well as methodologies used to identify ploidy alterations. These genes encode cell cycle regulators, transcription factors, metabolic proteins, nuclear scaffolding, and components of the sarcomere, among others. The general physiological and pathological phenotypes in the heart associated with the genetic manipulations described, and how they coincide with the respective cardiomyocyte ploidy alterations, are further discussed in this chapter. In addition to being candidates for genetic-based therapies for various cardiac maladies, these genes and their functions provide insightful evidence regarding the purpose of widespread polyploidization in cardiomyocytes.

心肌细胞倍性的调节是心脏发育和功能的一个复杂而严格的方面。心肌细胞倍性的范围从二倍体(2N)到 8N 甚至 16N,这些状态在发育和疾病进展的关键阶段会发生变化。多倍体化与细胞肥大有关,可支持心脏的正常生长、增强收缩能力并改善心脏的应激耐受性。相反,倍性的改变也发生在心脏疾病的发病过程中,如缺血性和非缺血性心力衰竭和心律失常。因此,了解哪些基因可控制和调节心肌细胞倍性,可从机理上揭示心脏生长、再生和疾病的根本原因。本章总结了目前有关参与调控心肌细胞倍性的基因的知识。我们讨论了已直接检测其在心肌细胞多倍体化中作用的基因,以及用于鉴定多倍体改变的方法。这些基因编码细胞周期调节因子、转录因子、代谢蛋白、核支架和肌节成分等。本章将进一步讨论与所述基因操作相关的心脏一般生理和病理表型,以及这些表型如何与相应的心肌细胞倍性改变相吻合。这些基因及其功能除了可作为治疗各种心脏疾病的基因疗法的候选基因外,还为心肌细胞广泛多倍体化的目的提供了深刻的证据。
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引用次数: 0
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Current Topics in Developmental Biology
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